[INFO] cloning repository https://github.com/pgarland/rosalind-rust
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/pgarland/rosalind-rust" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpgarland%2Frosalind-rust", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpgarland%2Frosalind-rust'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 76c923648161bfb564ace192c5f5209e416ddfe2
[INFO] checking pgarland/rosalind-rust against try#8e3afc79c11f48cb3acd1be5b3b7de98fe3f93a8 for pr-82565
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpgarland%2Frosalind-rust" "/workspace/builds/worker-12/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-12/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/pgarland/rosalind-rust on toolchain 8e3afc79c11f48cb3acd1be5b3b7de98fe3f93a8
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8e3afc79c11f48cb3acd1be5b3b7de98fe3f93a8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/pgarland/rosalind-rust
[INFO] finished tweaking git repo https://github.com/pgarland/rosalind-rust
[INFO] tweaked toml for git repo https://github.com/pgarland/rosalind-rust written to /workspace/builds/worker-12/source/Cargo.toml
[INFO] crate git repo https://github.com/pgarland/rosalind-rust already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8e3afc79c11f48cb3acd1be5b3b7de98fe3f93a8" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:f2f6bcd4b43ebee4e173f653a26493129bdb64017c85f916b780ca7fbdbaa79d" "/opt/rustwide/cargo-home/bin/cargo" "+8e3afc79c11f48cb3acd1be5b3b7de98fe3f93a8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 8bf3091b2f8b53a900ff035024ef05a0dcf82eefa2c497ed31df54a05441b2e8
[INFO] running `Command { std: "docker" "start" "-a" "8bf3091b2f8b53a900ff035024ef05a0dcf82eefa2c497ed31df54a05441b2e8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "8bf3091b2f8b53a900ff035024ef05a0dcf82eefa2c497ed31df54a05441b2e8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8bf3091b2f8b53a900ff035024ef05a0dcf82eefa2c497ed31df54a05441b2e8", kill_on_drop: false }`
[INFO] [stdout] 8bf3091b2f8b53a900ff035024ef05a0dcf82eefa2c497ed31df54a05441b2e8
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:f2f6bcd4b43ebee4e173f653a26493129bdb64017c85f916b780ca7fbdbaa79d" "/opt/rustwide/cargo-home/bin/cargo" "+8e3afc79c11f48cb3acd1be5b3b7de98fe3f93a8" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 4d2d9969d2e04dd9643e6aafb99c340983c0948021098c6120e12ae0a119fbbf
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "4d2d9969d2e04dd9643e6aafb99c340983c0948021098c6120e12ae0a119fbbf", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Checking rosalind-rust v0.0.1 (/opt/rustwide/workdir)
[INFO] [stdout] error: invalid suffix `u` for number literal
[INFO] [stdout]    --> src/main.rs:407:24
[INFO] [stdout]     |
[INFO] [stdout] 407 |     let mut distance = 0u;
[INFO] [stdout]     |                        ^^ invalid suffix `u`
[INFO] [stdout]     |
[INFO] [stdout]     = help: the suffix must be one of the numeric types (`u32`, `isize`, `f32`, etc.)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: invalid suffix `u` for number literal
[INFO] [stdout]    --> src/main.rs:407:24
[INFO] [stdout]     |
[INFO] [stdout] 407 |     let mut distance = 0u;
[INFO] [stdout]     |                        ^^ invalid suffix `u`
[INFO] [stdout]     |
[INFO] [stdout]     = help: the suffix must be one of the numeric types (`u32`, `isize`, `f32`, etc.)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0432]: unresolved import `std::io::File`
[INFO] [stdout]  --> src/main.rs:6:5
[INFO] [stdout]   |
[INFO] [stdout] 6 | use std::io::File;
[INFO] [stdout]   |     ^^^^^^^^^^^^^ no `File` in `io`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0432]: unresolved import `std::io::BufferedReader`
[INFO] [stdout]  --> src/main.rs:7:5
[INFO] [stdout]   |
[INFO] [stdout] 7 | use std::io::BufferedReader;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^ no `BufferedReader` in `io`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: only functions may be used as tests
[INFO] [stdout]   --> src/main.rs:11:1
[INFO] [stdout]    |
[INFO] [stdout] 11 | use std::num::FloatMath;
[INFO] [stdout]    | ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0432]: unresolved import `std::io::File`
[INFO] [stdout]  --> src/main.rs:6:5
[INFO] [stdout]   |
[INFO] [stdout] 6 | use std::io::File;
[INFO] [stdout]   |     ^^^^^^^^^^^^^ no `File` in `io`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0432]: unresolved import `std::io::BufferedReader`
[INFO] [stdout]  --> src/main.rs:7:5
[INFO] [stdout]   |
[INFO] [stdout] 7 | use std::io::BufferedReader;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^ no `BufferedReader` in `io`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0432]: unresolved import `std::num::FloatMath`
[INFO] [stdout]   --> src/main.rs:11:5
[INFO] [stdout]    |
[INFO] [stdout] 11 | use std::num::FloatMath;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^ no `FloatMath` in `num`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `args` in module `os`
[INFO] [stdout]   --> src/main.rs:15:20
[INFO] [stdout]    |
[INFO] [stdout] 15 |     let args = os::args();   
[INFO] [stdout]    |                    ^^^^ not found in `os`
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing this function
[INFO] [stdout]    |
[INFO] [stdout] 5  | use std::env::args;
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `from_str` in this scope
[INFO] [stdout]   --> src/main.rs:29:26
[INFO] [stdout]    |
[INFO] [stdout] 29 |             let homo_d = from_str(args[2].as_slice()).unwrap();
[INFO] [stdout]    |                          ^^^^^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `from_str` in this scope
[INFO] [stdout]   --> src/main.rs:30:23
[INFO] [stdout]    |
[INFO] [stdout] 30 |             let het = from_str(args[3].as_slice()).unwrap();
[INFO] [stdout]    |                       ^^^^^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `from_str` in this scope
[INFO] [stdout]   --> src/main.rs:31:26
[INFO] [stdout]    |
[INFO] [stdout] 31 |             let homo_r = from_str(args[4].as_slice()).unwrap();
[INFO] [stdout]    |                          ^^^^^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `from_str` in this scope
[INFO] [stdout]   --> src/main.rs:36:21
[INFO] [stdout]    |
[INFO] [stdout] 36 |             let n = from_str(args[2].as_slice()).unwrap();
[INFO] [stdout]    |                     ^^^^^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `from_str` in this scope
[INFO] [stdout]   --> src/main.rs:37:21
[INFO] [stdout]    |
[INFO] [stdout] 37 |             let k = from_str(args[3].as_slice()).unwrap();
[INFO] [stdout]    |                     ^^^^^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared type `Path`
[INFO] [stdout]   --> src/main.rs:75:16
[INFO] [stdout]    |
[INFO] [stdout] 75 |     let path = Path::new(fname);
[INFO] [stdout]    |                ^^^^ not found in this scope
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing this struct
[INFO] [stdout]    |
[INFO] [stdout] 5  | use std::path::Path;
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `uint` in this scope
[INFO] [stdout]    --> src/main.rs:178:17
[INFO] [stdout]     |
[INFO] [stdout] 178 | fn iprb(homo_d: uint, het: uint, homo_r: uint) -> f32 {
[INFO] [stdout]     |                 ^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `uint` in this scope
[INFO] [stdout]    --> src/main.rs:178:28
[INFO] [stdout]     |
[INFO] [stdout] 178 | fn iprb(homo_d: uint, het: uint, homo_r: uint) -> f32 {
[INFO] [stdout]     |                            ^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `uint` in this scope
[INFO] [stdout]    --> src/main.rs:178:42
[INFO] [stdout]     |
[INFO] [stdout] 178 | fn iprb(homo_d: uint, het: uint, homo_r: uint) -> f32 {
[INFO] [stdout]     |                                          ^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `uint` in this scope
[INFO] [stdout]    --> src/main.rs:203:20
[INFO] [stdout]     |
[INFO] [stdout] 203 | fn do_iprb(homo_d: uint, het: uint, homo_r: uint) -> () {
[INFO] [stdout]     |                    ^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `uint` in this scope
[INFO] [stdout]    --> src/main.rs:203:31
[INFO] [stdout]     |
[INFO] [stdout] 203 | fn do_iprb(homo_d: uint, het: uint, homo_r: uint) -> () {
[INFO] [stdout]     |                               ^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `uint` in this scope
[INFO] [stdout]    --> src/main.rs:203:45
[INFO] [stdout]     |
[INFO] [stdout] 203 | fn do_iprb(homo_d: uint, het: uint, homo_r: uint) -> () {
[INFO] [stdout]     |                                             ^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `uint` in this scope
[INFO] [stdout]    --> src/main.rs:217:12
[INFO] [stdout]     |
[INFO] [stdout] 217 | fn fib( n: uint, k: uint) -> uint {
[INFO] [stdout]     |            ^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `uint` in this scope
[INFO] [stdout]    --> src/main.rs:217:21
[INFO] [stdout]     |
[INFO] [stdout] 217 | fn fib( n: uint, k: uint) -> uint {
[INFO] [stdout]     |                     ^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `uint` in this scope
[INFO] [stdout]    --> src/main.rs:217:30
[INFO] [stdout]     |
[INFO] [stdout] 217 | fn fib( n: uint, k: uint) -> uint {
[INFO] [stdout]     |                              ^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared type `Path`
[INFO] [stdout]    --> src/main.rs:232:16
[INFO] [stdout]     |
[INFO] [stdout] 232 |     let path = Path::new(fname);
[INFO] [stdout]     |                ^^^^ not found in this scope
[INFO] [stdout]     |
[INFO] [stdout] help: consider importing this struct
[INFO] [stdout]     |
[INFO] [stdout] 5   | use std::path::Path;
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared type `Path`
[INFO] [stdout]    --> src/main.rs:319:16
[INFO] [stdout]     |
[INFO] [stdout] 319 |     let path = Path::new(fname);
[INFO] [stdout]     |                ^^^^ not found in this scope
[INFO] [stdout]     |
[INFO] [stdout] help: consider importing this struct
[INFO] [stdout]     |
[INFO] [stdout] 5   | use std::path::Path;
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `range` in this scope
[INFO] [stdout]    --> src/main.rs:339:18
[INFO] [stdout]     |
[INFO] [stdout] 339 |     let mut it = range(0, rna.len()).filter(|idx| *idx % 3 == 0);
[INFO] [stdout]     |                  ^^^^^ not found in this scope
[INFO] [stdout]     |
[INFO] [stdout] help: consider importing this function
[INFO] [stdout]     |
[INFO] [stdout] 5   | use std::slice::range;
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `uint` in this scope
[INFO] [stdout]    --> src/main.rs:370:40
[INFO] [stdout]     |
[INFO] [stdout] 370 | fn hash_genome(genome: &str, kmer_len: uint) -> HashMap<String, Vec<uint>> {
[INFO] [stdout]     |                                        ^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `uint` in this scope
[INFO] [stdout]    --> src/main.rs:370:69
[INFO] [stdout]     |
[INFO] [stdout] 370 | fn hash_genome(genome: &str, kmer_len: uint) -> HashMap<String, Vec<uint>> {
[INFO] [stdout]     |               -                                                     ^^^^ not found in this scope
[INFO] [stdout]     |               |
[INFO] [stdout]     |               help: you might be missing a type parameter: `<uint>`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `uint` in this scope
[INFO] [stdout]    --> src/main.rs:372:47
[INFO] [stdout]     |
[INFO] [stdout] 370 | fn hash_genome(genome: &str, kmer_len: uint) -> HashMap<String, Vec<uint>> {
[INFO] [stdout]     |               - help: you might be missing a type parameter: `<uint>`
[INFO] [stdout] 371 | 
[INFO] [stdout] 372 |     let mut genome_hash : HashMap<String, Vec<uint>> = HashMap::new();
[INFO] [stdout]     |                                               ^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `range` in this scope
[INFO] [stdout]    --> src/main.rs:374:16
[INFO] [stdout]     |
[INFO] [stdout] 374 |     for pos in range(0, genome.len() - kmer_len) {
[INFO] [stdout]     |                ^^^^^ not found in this scope
[INFO] [stdout]     |
[INFO] [stdout] help: consider importing this function
[INFO] [stdout]     |
[INFO] [stdout] 5   | use std::slice::range;
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `uint` in this scope
[INFO] [stdout]    --> src/main.rs:389:50
[INFO] [stdout]     |
[INFO] [stdout] 389 | fn subs(genome: &str, probe: &str) -> Option<Vec<uint>> {
[INFO] [stdout]     |        -                                         ^^^^ not found in this scope
[INFO] [stdout]     |        |
[INFO] [stdout]     |        help: you might be missing a type parameter: `<uint>`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `uint` in this scope
[INFO] [stdout]    --> src/main.rs:406:42
[INFO] [stdout]     |
[INFO] [stdout] 406 | fn hamming_distance(s: &str, t: &str) -> uint {
[INFO] [stdout]     |                                          ^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `args` in module `os`
[INFO] [stdout]   --> src/main.rs:15:20
[INFO] [stdout]    |
[INFO] [stdout] 15 |     let args = os::args();   
[INFO] [stdout]    |                    ^^^^ not found in `os`
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing this function
[INFO] [stdout]    |
[INFO] [stdout] 5  | use std::env::args;
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `from_str` in this scope
[INFO] [stdout]   --> src/main.rs:29:26
[INFO] [stdout]    |
[INFO] [stdout] 29 |             let homo_d = from_str(args[2].as_slice()).unwrap();
[INFO] [stdout]    |                          ^^^^^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `from_str` in this scope
[INFO] [stdout]   --> src/main.rs:30:23
[INFO] [stdout]    |
[INFO] [stdout] 30 |             let het = from_str(args[3].as_slice()).unwrap();
[INFO] [stdout]    |                       ^^^^^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `from_str` in this scope
[INFO] [stdout]   --> src/main.rs:31:26
[INFO] [stdout]    |
[INFO] [stdout] 31 |             let homo_r = from_str(args[4].as_slice()).unwrap();
[INFO] [stdout]    |                          ^^^^^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `from_str` in this scope
[INFO] [stdout]   --> src/main.rs:36:21
[INFO] [stdout]    |
[INFO] [stdout] 36 |             let n = from_str(args[2].as_slice()).unwrap();
[INFO] [stdout]    |                     ^^^^^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `from_str` in this scope
[INFO] [stdout]   --> src/main.rs:37:21
[INFO] [stdout]    |
[INFO] [stdout] 37 |             let k = from_str(args[3].as_slice()).unwrap();
[INFO] [stdout]    |                     ^^^^^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared type `Path`
[INFO] [stdout]   --> src/main.rs:75:16
[INFO] [stdout]    |
[INFO] [stdout] 75 |     let path = Path::new(fname);
[INFO] [stdout]    |                ^^^^ not found in this scope
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing this struct
[INFO] [stdout]    |
[INFO] [stdout] 5  | use std::path::Path;
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `uint` in this scope
[INFO] [stdout]    --> src/main.rs:178:17
[INFO] [stdout]     |
[INFO] [stdout] 178 | fn iprb(homo_d: uint, het: uint, homo_r: uint) -> f32 {
[INFO] [stdout]     |                 ^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `uint` in this scope
[INFO] [stdout]    --> src/main.rs:178:28
[INFO] [stdout]     |
[INFO] [stdout] 178 | fn iprb(homo_d: uint, het: uint, homo_r: uint) -> f32 {
[INFO] [stdout]     |                            ^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `uint` in this scope
[INFO] [stdout]    --> src/main.rs:178:42
[INFO] [stdout]     |
[INFO] [stdout] 178 | fn iprb(homo_d: uint, het: uint, homo_r: uint) -> f32 {
[INFO] [stdout]     |                                          ^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `uint` in this scope
[INFO] [stdout]    --> src/main.rs:203:20
[INFO] [stdout]     |
[INFO] [stdout] 203 | fn do_iprb(homo_d: uint, het: uint, homo_r: uint) -> () {
[INFO] [stdout]     |                    ^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `uint` in this scope
[INFO] [stdout]    --> src/main.rs:203:31
[INFO] [stdout]     |
[INFO] [stdout] 203 | fn do_iprb(homo_d: uint, het: uint, homo_r: uint) -> () {
[INFO] [stdout]     |                               ^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `uint` in this scope
[INFO] [stdout]    --> src/main.rs:203:45
[INFO] [stdout]     |
[INFO] [stdout] 203 | fn do_iprb(homo_d: uint, het: uint, homo_r: uint) -> () {
[INFO] [stdout]     |                                             ^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `uint` in this scope
[INFO] [stdout]    --> src/main.rs:217:12
[INFO] [stdout]     |
[INFO] [stdout] 217 | fn fib( n: uint, k: uint) -> uint {
[INFO] [stdout]     |            ^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `uint` in this scope
[INFO] [stdout]    --> src/main.rs:217:21
[INFO] [stdout]     |
[INFO] [stdout] 217 | fn fib( n: uint, k: uint) -> uint {
[INFO] [stdout]     |                     ^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `uint` in this scope
[INFO] [stdout]    --> src/main.rs:217:30
[INFO] [stdout]     |
[INFO] [stdout] 217 | fn fib( n: uint, k: uint) -> uint {
[INFO] [stdout]     |                              ^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared type `Path`
[INFO] [stdout]    --> src/main.rs:232:16
[INFO] [stdout]     |
[INFO] [stdout] 232 |     let path = Path::new(fname);
[INFO] [stdout]     |                ^^^^ not found in this scope
[INFO] [stdout]     |
[INFO] [stdout] help: consider importing this struct
[INFO] [stdout]     |
[INFO] [stdout] 5   | use std::path::Path;
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: failed to resolve: use of undeclared type `Path`
[INFO] [stdout]    --> src/main.rs:319:16
[INFO] [stdout]     |
[INFO] [stdout] 319 |     let path = Path::new(fname);
[INFO] [stdout]     |                ^^^^ not found in this scope
[INFO] [stdout]     |
[INFO] [stdout] help: consider importing this struct
[INFO] [stdout]     |
[INFO] [stdout] 5   | use std::path::Path;
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `range` in this scope
[INFO] [stdout]    --> src/main.rs:339:18
[INFO] [stdout]     |
[INFO] [stdout] 339 |     let mut it = range(0, rna.len()).filter(|idx| *idx % 3 == 0);
[INFO] [stdout]     |                  ^^^^^ not found in this scope
[INFO] [stdout]     |
[INFO] [stdout] help: consider importing this function
[INFO] [stdout]     |
[INFO] [stdout] 5   | use std::slice::range;
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `uint` in this scope
[INFO] [stdout]    --> src/main.rs:370:40
[INFO] [stdout]     |
[INFO] [stdout] 370 | fn hash_genome(genome: &str, kmer_len: uint) -> HashMap<String, Vec<uint>> {
[INFO] [stdout]     |                                        ^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `uint` in this scope
[INFO] [stdout]    --> src/main.rs:370:69
[INFO] [stdout]     |
[INFO] [stdout] 370 | fn hash_genome(genome: &str, kmer_len: uint) -> HashMap<String, Vec<uint>> {
[INFO] [stdout]     |               -                                                     ^^^^ not found in this scope
[INFO] [stdout]     |               |
[INFO] [stdout]     |               help: you might be missing a type parameter: `<uint>`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `uint` in this scope
[INFO] [stdout]    --> src/main.rs:372:47
[INFO] [stdout]     |
[INFO] [stdout] 370 | fn hash_genome(genome: &str, kmer_len: uint) -> HashMap<String, Vec<uint>> {
[INFO] [stdout]     |               - help: you might be missing a type parameter: `<uint>`
[INFO] [stdout] 371 | 
[INFO] [stdout] 372 |     let mut genome_hash : HashMap<String, Vec<uint>> = HashMap::new();
[INFO] [stdout]     |                                               ^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `range` in this scope
[INFO] [stdout]    --> src/main.rs:374:16
[INFO] [stdout]     |
[INFO] [stdout] 374 |     for pos in range(0, genome.len() - kmer_len) {
[INFO] [stdout]     |                ^^^^^ not found in this scope
[INFO] [stdout]     |
[INFO] [stdout] help: consider importing this function
[INFO] [stdout]     |
[INFO] [stdout] 5   | use std::slice::range;
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `uint` in this scope
[INFO] [stdout]    --> src/main.rs:389:50
[INFO] [stdout]     |
[INFO] [stdout] 389 | fn subs(genome: &str, probe: &str) -> Option<Vec<uint>> {
[INFO] [stdout]     |        -                                         ^^^^ not found in this scope
[INFO] [stdout]     |        |
[INFO] [stdout]     |        help: you might be missing a type parameter: `<uint>`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0412]: cannot find type `uint` in this scope
[INFO] [stdout]    --> src/main.rs:406:42
[INFO] [stdout]     |
[INFO] [stdout] 406 | fn hamming_distance(s: &str, t: &str) -> uint {
[INFO] [stdout]     |                                          ^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `as_slice` found for struct `String` in the current scope
[INFO] [stdout]   --> src/main.rs:50:37
[INFO] [stdout]    |
[INFO] [stdout] 50 |             println!("{}", prot(rna.as_slice(), codon_table));
[INFO] [stdout]    |                                     ^^^^^^^^ method not found in `String`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `as_slice` found for struct `String` in the current scope
[INFO] [stdout]   --> src/main.rs:88:37
[INFO] [stdout]    |
[INFO] [stdout] 88 |     let nuc_count = count_nucs(nucs.as_slice());
[INFO] [stdout]    |                                     ^^^^^^^^ method not found in `String`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `as_slice` found for struct `String` in the current scope
[INFO] [stdout]   --> src/main.rs:50:37
[INFO] [stdout]    |
[INFO] [stdout] 50 |             println!("{}", prot(rna.as_slice(), codon_table));
[INFO] [stdout]    |                                     ^^^^^^^^ method not found in `String`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `as_slice` found for struct `String` in the current scope
[INFO] [stdout]    --> src/main.rs:125:30
[INFO] [stdout]     |
[INFO] [stdout] 125 |     let rna = transcribe(dna.as_slice());
[INFO] [stdout]     |                              ^^^^^^^^ method not found in `String`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `as_slice` found for struct `String` in the current scope
[INFO] [stdout]   --> src/main.rs:88:37
[INFO] [stdout]    |
[INFO] [stdout] 88 |     let nuc_count = count_nucs(nucs.as_slice());
[INFO] [stdout]    |                                     ^^^^^^^^ method not found in `String`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `as_slice` found for struct `String` in the current scope
[INFO] [stdout]    --> src/main.rs:125:30
[INFO] [stdout]     |
[INFO] [stdout] 125 |     let rna = transcribe(dna.as_slice());
[INFO] [stdout]     |                              ^^^^^^^^ method not found in `String`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `as_slice` found for struct `String` in the current scope
[INFO] [stdout]    --> src/main.rs:241:19
[INFO] [stdout]     |
[INFO] [stdout] 241 |             if id.as_slice() == "" { panic!("Invalid FASTA file: sequence does not have id") }
[INFO] [stdout]     |                   ^^^^^^^^ method not found in `String`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `as_slice` found for struct `String` in the current scope
[INFO] [stdout]    --> src/main.rs:246:19
[INFO] [stdout]     |
[INFO] [stdout] 246 |             if id.as_slice() != "" {
[INFO] [stdout]     |                   ^^^^^^^^ method not found in `String`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `trim_left_chars` found for reference `&str` in the current scope
[INFO] [stdout]    --> src/main.rs:269:10
[INFO] [stdout]     |
[INFO] [stdout] 269 |     line.trim_left_chars('>').to_string()
[INFO] [stdout]     |          ^^^^^^^^^^^^^^^ help: there is an associated function with a similar name: `trim_left_matches`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `as_slice` found for reference `&String` in the current scope
[INFO] [stdout]    --> src/main.rs:292:34
[INFO] [stdout]     |
[INFO] [stdout] 292 |         this_gc = gc_content(seq.as_slice());
[INFO] [stdout]     |                                  ^^^^^^^^ method not found in `&String`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `as_slice` found for struct `String` in the current scope
[INFO] [stdout]    --> src/main.rs:241:19
[INFO] [stdout]     |
[INFO] [stdout] 241 |             if id.as_slice() == "" { panic!("Invalid FASTA file: sequence does not have id") }
[INFO] [stdout]     |                   ^^^^^^^^ method not found in `String`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `as_slice` found for struct `String` in the current scope
[INFO] [stdout]    --> src/main.rs:246:19
[INFO] [stdout]     |
[INFO] [stdout] 246 |             if id.as_slice() != "" {
[INFO] [stdout]     |                   ^^^^^^^^ method not found in `String`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `as_slice` found for struct `String` in the current scope
[INFO] [stdout]    --> src/main.rs:310:16
[INFO] [stdout]     |
[INFO] [stdout] 310 |     assert!(id.as_slice() == "Rosalind_0808");
[INFO] [stdout]     |                ^^^^^^^^ method not found in `String`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `slice` found for reference `&'a str` in the current scope
[INFO] [stdout]    --> src/main.rs:342:25
[INFO] [stdout]     |
[INFO] [stdout] 342 |         let codon = rna.slice(idx, idx + 3).to_string();
[INFO] [stdout]     |                         ^^^^^ method not found in `&'a str`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `trim_left_chars` found for reference `&str` in the current scope
[INFO] [stdout]    --> src/main.rs:269:10
[INFO] [stdout]     |
[INFO] [stdout] 269 |     line.trim_left_chars('>').to_string()
[INFO] [stdout]     |          ^^^^^^^^^^^^^^^ help: there is an associated function with a similar name: `trim_left_matches`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `as_slice` found for reference `&String` in the current scope
[INFO] [stdout]    --> src/main.rs:345:15
[INFO] [stdout]     |
[INFO] [stdout] 345 |         if aa.as_slice() == "(Stop)" {
[INFO] [stdout]     |               ^^^^^^^^ method not found in `&String`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `as_slice` found for reference `&String` in the current scope
[INFO] [stdout]    --> src/main.rs:292:34
[INFO] [stdout]     |
[INFO] [stdout] 292 |         this_gc = gc_content(seq.as_slice());
[INFO] [stdout]     |                                  ^^^^^^^^ method not found in `&String`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `slice` found for reference `&'a str` in the current scope
[INFO] [stdout]    --> src/main.rs:342:25
[INFO] [stdout]     |
[INFO] [stdout] 342 |         let codon = rna.slice(idx, idx + 3).to_string();
[INFO] [stdout]     |                         ^^^^^ method not found in `&'a str`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `as_slice` found for struct `String` in the current scope
[INFO] [stdout]    --> src/main.rs:349:32
[INFO] [stdout]     |
[INFO] [stdout] 349 |         peptide.push_str((*aa).as_slice());
[INFO] [stdout]     |                                ^^^^^^^^ method not found in `String`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `as_slice` found for reference `&String` in the current scope
[INFO] [stdout]    --> src/main.rs:345:15
[INFO] [stdout]     |
[INFO] [stdout] 345 |         if aa.as_slice() == "(Stop)" {
[INFO] [stdout]     |               ^^^^^^^^ method not found in `&String`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `as_slice` found for struct `String` in the current scope
[INFO] [stdout]    --> src/main.rs:349:32
[INFO] [stdout]     |
[INFO] [stdout] 349 |         peptide.push_str((*aa).as_slice());
[INFO] [stdout]     |                                ^^^^^^^^ method not found in `String`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `as_slice` found for struct `String` in the current scope
[INFO] [stdout]    --> src/main.rs:365:22
[INFO] [stdout]     |
[INFO] [stdout] 365 |     assert!(prot(rna.as_slice(), codon_table).as_slice() == "MAMAPRTEINSTRING");
[INFO] [stdout]     |                      ^^^^^^^^ method not found in `String`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `as_slice` found for struct `String` in the current scope
[INFO] [stdout]    --> src/main.rs:365:47
[INFO] [stdout]     |
[INFO] [stdout] 365 |     assert!(prot(rna.as_slice(), codon_table).as_slice() == "MAMAPRTEINSTRING");
[INFO] [stdout]     |                                               ^^^^^^^^ method not found in `String`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `slice` found for reference `&str` in the current scope
[INFO] [stdout]    --> src/main.rs:375:27
[INFO] [stdout]     |
[INFO] [stdout] 375 |         let kmer = genome.slice(pos, pos + kmer_len).to_string();
[INFO] [stdout]     |                           ^^^^^ method not found in `&str`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `slice` found for reference `&str` in the current scope
[INFO] [stdout]    --> src/main.rs:375:27
[INFO] [stdout]     |
[INFO] [stdout] 375 |         let kmer = genome.slice(pos, pos + kmer_len).to_string();
[INFO] [stdout]     |                           ^^^^^ method not found in `&str`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 39 previous errors
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] Some errors have detailed explanations: E0412, E0425, E0432, E0433, E0599.
[INFO] [stdout] 
[INFO] [stdout] For more information about an error, try `rustc --explain E0412`.
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 44 previous errors
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] Some errors have detailed explanations: E0412, E0425, E0432, E0433, E0599.
[INFO] [stdout] 
[INFO] [stdout] For more information about an error, try `rustc --explain E0412`.
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `rosalind-rust`
[INFO] [stderr] 
[INFO] [stderr] To learn more, run the command again with --verbose.
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: build failed
[INFO] running `Command { std: "docker" "inspect" "4d2d9969d2e04dd9643e6aafb99c340983c0948021098c6120e12ae0a119fbbf", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4d2d9969d2e04dd9643e6aafb99c340983c0948021098c6120e12ae0a119fbbf", kill_on_drop: false }`
[INFO] [stdout] 4d2d9969d2e04dd9643e6aafb99c340983c0948021098c6120e12ae0a119fbbf