[INFO] cloning repository https://github.com/10XGenomics/rust-pseudoaligner [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/10XGenomics/rust-pseudoaligner" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Frust-pseudoaligner", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Frust-pseudoaligner'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] b03360394ab764b0b0d1a1e5b2c0cdfea74574d3 [INFO] checking 10XGenomics/rust-pseudoaligner against try#8e3afc79c11f48cb3acd1be5b3b7de98fe3f93a8 for pr-82565 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Frust-pseudoaligner" "/workspace/builds/worker-9/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-9/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/10XGenomics/rust-pseudoaligner on toolchain 8e3afc79c11f48cb3acd1be5b3b7de98fe3f93a8 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8e3afc79c11f48cb3acd1be5b3b7de98fe3f93a8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/10XGenomics/rust-pseudoaligner [INFO] finished tweaking git repo https://github.com/10XGenomics/rust-pseudoaligner [INFO] tweaked toml for git repo https://github.com/10XGenomics/rust-pseudoaligner written to /workspace/builds/worker-9/source/Cargo.toml [INFO] crate git repo https://github.com/10XGenomics/rust-pseudoaligner already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+8e3afc79c11f48cb3acd1be5b3b7de98fe3f93a8" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating git repository `https://github.com/10XGenomics/rust-debruijn` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded bio v0.31.0 [INFO] [stderr] Downloaded dashmap v1.2.1 [INFO] [stderr] Downloaded wyhash v0.3.0 [INFO] [stderr] Downloaded proptest v0.9.5 [INFO] [stderr] Downloaded bv v0.11.0 [INFO] [stderr] Downloaded multimap v0.6.0 [INFO] [stderr] Downloaded boomphf v0.5.2 [INFO] [stderr] Downloaded bio-types v0.5.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:f2f6bcd4b43ebee4e173f653a26493129bdb64017c85f916b780ca7fbdbaa79d" "/opt/rustwide/cargo-home/bin/cargo" "+8e3afc79c11f48cb3acd1be5b3b7de98fe3f93a8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 0e8dd5f2610403a8568fac7a54d0c1d6f11c54aa716893a6b3fd9eccafb90f42 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "0e8dd5f2610403a8568fac7a54d0c1d6f11c54aa716893a6b3fd9eccafb90f42", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "0e8dd5f2610403a8568fac7a54d0c1d6f11c54aa716893a6b3fd9eccafb90f42", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0e8dd5f2610403a8568fac7a54d0c1d6f11c54aa716893a6b3fd9eccafb90f42", kill_on_drop: false }` [INFO] [stdout] 0e8dd5f2610403a8568fac7a54d0c1d6f11c54aa716893a6b3fd9eccafb90f42 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:f2f6bcd4b43ebee4e173f653a26493129bdb64017c85f916b780ca7fbdbaa79d" "/opt/rustwide/cargo-home/bin/cargo" "+8e3afc79c11f48cb3acd1be5b3b7de98fe3f93a8" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 05370f2c2e61365b54ece5697f226c5bee8dd95daeb841d05a7737b4858832f9 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "05370f2c2e61365b54ece5697f226c5bee8dd95daeb841d05a7737b4858832f9", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.66 [INFO] [stderr] Compiling unicode-xid v0.2.0 [INFO] [stderr] Compiling syn v1.0.7 [INFO] [stderr] Checking cfg-if v0.1.10 [INFO] [stderr] Compiling autocfg v0.1.7 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Compiling semver-parser v0.7.0 [INFO] [stderr] Compiling serde v1.0.104 [INFO] [stderr] Compiling memchr v2.3.0 [INFO] [stderr] Checking rand_core v0.4.2 [INFO] [stderr] Compiling byteorder v1.3.2 [INFO] [stderr] Checking scopeguard v1.0.0 [INFO] [stderr] Checking quick-error v1.2.3 [INFO] [stderr] Checking regex-syntax v0.6.13 [INFO] [stderr] Compiling ryu v1.0.2 [INFO] [stderr] Compiling maybe-uninit v2.0.0 [INFO] [stderr] Compiling log v0.4.8 [INFO] [stderr] Compiling proc-macro-nested v0.1.3 [INFO] [stderr] Checking fnv v1.0.6 [INFO] [stderr] Checking futures-core v0.3.1 [INFO] [stderr] Checking futures-sink v0.3.1 [INFO] [stderr] Checking futures-io v0.3.1 [INFO] [stderr] Checking futures-task v0.3.1 [INFO] [stderr] Compiling doc-comment v0.3.1 [INFO] [stderr] Checking slab v0.4.2 [INFO] [stderr] Checking ppv-lite86 v0.2.6 [INFO] [stderr] Checking pin-utils v0.1.0-alpha.4 [INFO] [stderr] Checking itoa v0.4.5 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling failure_derive v0.1.6 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling unicode-segmentation v1.6.0 [INFO] [stderr] Compiling ndarray v0.13.0 [INFO] [stderr] Compiling crc32fast v1.2.0 [INFO] [stderr] Checking adler32 v1.0.4 [INFO] [stderr] Checking termcolor v1.1.0 [INFO] [stderr] Compiling bio v0.31.0 [INFO] [stderr] Checking rustc-demangle v0.1.16 [INFO] [stderr] Checking ordermap v0.3.5 [INFO] [stderr] Checking fixedbitset v0.1.9 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Checking smallvec v1.1.0 [INFO] [stderr] Checking strum v0.16.0 [INFO] [stderr] Checking bytecount v0.6.0 [INFO] [stderr] Checking remove_dir_all v0.5.2 [INFO] [stderr] Checking strsim v0.9.3 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling num-bigint v0.2.6 [INFO] [stderr] Compiling num-rational v0.2.3 [INFO] [stderr] Compiling num-iter v0.1.40 [INFO] [stderr] Checking itertools v0.8.2 [INFO] [stderr] Checking itertools v0.7.11 [INFO] [stderr] Checking humantime v1.3.0 [INFO] [stderr] Checking thread_local v1.0.1 [INFO] [stderr] Checking crossbeam-utils v0.6.6 [INFO] [stderr] Compiling backtrace-sys v0.1.32 [INFO] [stderr] Checking rand_core v0.3.1 [INFO] [stderr] Checking rand_jitter v0.1.4 [INFO] [stderr] Checking wyhash v0.3.0 [INFO] [stderr] Compiling semver v0.9.0 [INFO] [stderr] Checking futures-channel v0.3.1 [INFO] [stderr] Checking matrixmultiply v0.2.3 [INFO] [stderr] Checking miniz_oxide v0.3.5 [INFO] [stderr] Compiling crossbeam-epoch v0.8.0 [INFO] [stderr] Compiling rand_pcg v0.1.2 [INFO] [stderr] Compiling rand_chacha v0.1.1 [INFO] [stderr] Compiling rand v0.6.5 [INFO] [stderr] Compiling hashbrown v0.6.3 [INFO] [stderr] Checking c2-chacha v0.2.3 [INFO] [stderr] Compiling bv v0.11.0 [INFO] [stderr] Checking pretty_assertions v0.5.1 [INFO] [stderr] Compiling proc-macro2 v1.0.6 [INFO] [stderr] Compiling heck v0.3.1 [INFO] [stderr] Checking petgraph v0.4.13 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking rand_xorshift v0.1.1 [INFO] [stderr] Checking rand_isaac v0.1.1 [INFO] [stderr] Checking rand_hc v0.1.0 [INFO] [stderr] Checking lock_api v0.3.3 [INFO] [stderr] Compiling rustc_version v0.2.3 [INFO] [stderr] Checking crossbeam-utils v0.7.2 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Compiling quote v1.0.2 [INFO] [stderr] Checking regex-automata v0.1.8 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Checking crossbeam-queue v0.2.1 [INFO] [stderr] Compiling memoffset v0.5.3 [INFO] [stderr] Compiling parking_lot_core v0.6.2 [INFO] [stderr] Compiling parking_lot v0.9.0 [INFO] [stderr] Checking num_cpus v1.12.0 [INFO] [stderr] Checking getrandom v0.1.14 [INFO] [stderr] Checking rand_os v0.1.3 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking time v0.1.42 [INFO] [stderr] Checking rand v0.5.6 [INFO] [stderr] Checking flate2 v1.0.13 [INFO] [stderr] Checking wait-timeout v0.2.0 [INFO] [stderr] Checking backtrace v0.3.42 [INFO] [stderr] Checking aho-corasick v0.7.6 [INFO] [stderr] Checking csv-core v0.1.6 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking chrono v0.4.10 [INFO] [stderr] Checking rand_chacha v0.2.1 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking crossbeam-deque v0.7.2 [INFO] [stderr] Checking rayon-core v1.7.0 [INFO] [stderr] Checking num v0.2.1 [INFO] [stderr] Checking rayon v1.3.0 [INFO] [stderr] Checking regex v1.3.3 [INFO] [stderr] Checking statrs v0.11.0 [INFO] [stderr] Checking tempfile v3.1.0 [INFO] [stderr] Checking rusty-fork v0.2.2 [INFO] [stderr] Checking proptest v0.9.5 [INFO] [stderr] Checking env_logger v0.6.2 [INFO] [stderr] Checking pretty_env_logger v0.3.1 [INFO] [stderr] Compiling synstructure v0.12.3 [INFO] [stderr] Compiling serde_derive v1.0.104 [INFO] [stderr] Compiling proc-macro-hack v0.5.11 [INFO] [stderr] Compiling snafu-derive v0.6.8 [INFO] [stderr] Compiling strum_macros v0.16.0 [INFO] [stderr] Compiling getset v0.0.9 [INFO] [stderr] Checking failure v0.1.6 [INFO] [stderr] Compiling futures-macro v0.3.1 [INFO] [stderr] Compiling const-random-macro v0.1.8 [INFO] [stderr] Checking const-random v0.1.8 [INFO] [stderr] Checking ahash v0.2.18 [INFO] [stderr] Checking snafu v0.6.8 [INFO] [stderr] Checking futures-util v0.3.1 [INFO] [stderr] Checking futures-executor v0.3.1 [INFO] [stderr] Checking futures v0.3.1 [INFO] [stderr] Checking smallvec v0.6.13 [INFO] [stderr] Checking bstr v0.2.10 [INFO] [stderr] Checking serde_json v1.0.45 [INFO] [stderr] Checking multimap v0.6.0 [INFO] [stderr] Checking bio-types v0.5.1 [INFO] [stderr] Checking boomphf v0.5.2 [INFO] [stderr] Checking vec_map v0.8.1 [INFO] [stderr] Checking docopt v1.1.0 [INFO] [stderr] Checking bincode v1.2.1 [INFO] [stderr] Checking csv v1.1.3 [INFO] [stderr] Checking debruijn v0.3.0 (https://github.com/10XGenomics/rust-debruijn#dc41dd29) [INFO] [stderr] Checking dashmap v1.2.1 [INFO] [stderr] Checking debruijn_mapping v0.4.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unnecessary parentheses around type [INFO] [stdout] --> src/mappability.rs:120:67 [INFO] [stdout] | [INFO] [stdout] 120 | pub fn analyze_graph(index: &Pseudoaligner) -> Result<(Vec), Error> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_parens)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated function `debruijn::msp::simple_scan`: Please use the `Scanner` type instead [INFO] [stdout] --> src/build_index.rs:252:20 [INFO] [stdout] | [INFO] [stdout] 252 | let msps = debruijn::msp::simple_scan::<_, PmerType>(K::k(), contig, &PERM, !STRANDED); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary parentheses around type [INFO] [stdout] --> src/mappability.rs:120:67 [INFO] [stdout] | [INFO] [stdout] 120 | pub fn analyze_graph(index: &Pseudoaligner) -> Result<(Vec), Error> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_parens)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated function `debruijn::msp::simple_scan`: Please use the `Scanner` type instead [INFO] [stdout] --> src/build_index.rs:252:20 [INFO] [stdout] | [INFO] [stdout] 252 | let msps = debruijn::msp::simple_scan::<_, PmerType>(K::k(), contig, &PERM, !STRANDED); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `test_gencode_full_build` [INFO] [stdout] --> src/build_index.rs:402:8 [INFO] [stdout] | [INFO] [stdout] 402 | fn test_gencode_full_build() -> Result<(), Error> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 57s [INFO] running `Command { std: "docker" "inspect" "05370f2c2e61365b54ece5697f226c5bee8dd95daeb841d05a7737b4858832f9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "05370f2c2e61365b54ece5697f226c5bee8dd95daeb841d05a7737b4858832f9", kill_on_drop: false }` [INFO] [stdout] 05370f2c2e61365b54ece5697f226c5bee8dd95daeb841d05a7737b4858832f9