[INFO] fetching crate netcdf-sys 0.3.4... [INFO] checking netcdf-sys-0.3.4 against master#9fa580b1175018b0a276b0bc68f9827a106f7260 for pr-82565 [INFO] extracting crate netcdf-sys 0.3.4 into /workspace/builds/worker-3/source [INFO] validating manifest of crates.io crate netcdf-sys 0.3.4 on toolchain 9fa580b1175018b0a276b0bc68f9827a106f7260 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+9fa580b1175018b0a276b0bc68f9827a106f7260" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate netcdf-sys 0.3.4 [INFO] finished tweaking crates.io crate netcdf-sys 0.3.4 [INFO] tweaked toml for crates.io crate netcdf-sys 0.3.4 written to /workspace/builds/worker-3/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+9fa580b1175018b0a276b0bc68f9827a106f7260" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+9fa580b1175018b0a276b0bc68f9827a106f7260" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:f2f6bcd4b43ebee4e173f653a26493129bdb64017c85f916b780ca7fbdbaa79d" "/opt/rustwide/cargo-home/bin/cargo" "+9fa580b1175018b0a276b0bc68f9827a106f7260" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 50715d360c00689c7f89ad5abee84f38eeb55b91ebfc4179e3ec73aa654155f0 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "50715d360c00689c7f89ad5abee84f38eeb55b91ebfc4179e3ec73aa654155f0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "50715d360c00689c7f89ad5abee84f38eeb55b91ebfc4179e3ec73aa654155f0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "50715d360c00689c7f89ad5abee84f38eeb55b91ebfc4179e3ec73aa654155f0", kill_on_drop: false }` [INFO] [stdout] 50715d360c00689c7f89ad5abee84f38eeb55b91ebfc4179e3ec73aa654155f0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:f2f6bcd4b43ebee4e173f653a26493129bdb64017c85f916b780ca7fbdbaa79d" "/opt/rustwide/cargo-home/bin/cargo" "+9fa580b1175018b0a276b0bc68f9827a106f7260" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] e6e39ef946d4af2aef7d5183290018d51740d07d90ddf6f91f55b48522ea5c46 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "e6e39ef946d4af2aef7d5183290018d51740d07d90ddf6f91f55b48522ea5c46", kill_on_drop: false }` [INFO] [stderr] Compiling netcdf-sys v0.3.4 (/opt/rustwide/workdir) [INFO] [stderr] Compiling libloading v0.6.7 [INFO] [stderr] Compiling libz-sys v1.1.2 [INFO] [stderr] Compiling hdf5-sys v0.7.1 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.1` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-18bbfbf014f6c69c/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55af8d403b30 - std::backtrace_rs::backtrace::libunwind::trace::h9d49145f95eb5894 [INFO] [stderr] at /rustc/9fa580b1175018b0a276b0bc68f9827a106f7260/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x55af8d403b30 - std::backtrace_rs::backtrace::trace_unsynchronized::hab1d020365bb6864 [INFO] [stderr] at /rustc/9fa580b1175018b0a276b0bc68f9827a106f7260/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55af8d403b30 - std::sys_common::backtrace::_print_fmt::h7659588431e304bd [INFO] [stderr] at /rustc/9fa580b1175018b0a276b0bc68f9827a106f7260/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55af8d403b30 - ::fmt::h09f4a9e3befae3c7 [INFO] [stderr] at /rustc/9fa580b1175018b0a276b0bc68f9827a106f7260/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55af8d42008c - core::fmt::write::hf3fdfde304b9a088 [INFO] [stderr] at /rustc/9fa580b1175018b0a276b0bc68f9827a106f7260/library/core/src/fmt/mod.rs:1092:17 [INFO] [stderr] 5: 0x55af8d400432 - std::io::Write::write_fmt::h1cb850689c7116f0 [INFO] [stderr] at /rustc/9fa580b1175018b0a276b0bc68f9827a106f7260/library/std/src/io/mod.rs:1568:15 [INFO] [stderr] 6: 0x55af8d405c45 - std::sys_common::backtrace::_print::hdbccd5aa093ba544 [INFO] [stderr] at /rustc/9fa580b1175018b0a276b0bc68f9827a106f7260/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55af8d405c45 - std::sys_common::backtrace::print::hc639c4f320222558 [INFO] [stderr] at /rustc/9fa580b1175018b0a276b0bc68f9827a106f7260/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55af8d405c45 - std::panicking::default_hook::{{closure}}::hdb012dd7a485bb5d [INFO] [stderr] at /rustc/9fa580b1175018b0a276b0bc68f9827a106f7260/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x55af8d4056f3 - std::panicking::default_hook::h75facbce77b6ba91 [INFO] [stderr] at /rustc/9fa580b1175018b0a276b0bc68f9827a106f7260/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x55af8d4063e1 - std::panicking::rust_panic_with_hook::hbcaa5de2cb5e22d5 [INFO] [stderr] at /rustc/9fa580b1175018b0a276b0bc68f9827a106f7260/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x55af8d216e0e - std::panicking::begin_panic::{{closure}}::h3fa1b4f1ce64fe77 [INFO] [stderr] at /rustc/9fa580b1175018b0a276b0bc68f9827a106f7260/library/std/src/panicking.rs:520:9 [INFO] [stderr] 12: 0x55af8d1ff999 - std::sys_common::backtrace::__rust_end_short_backtrace::h200422111a418c24 [INFO] [stderr] at /rustc/9fa580b1175018b0a276b0bc68f9827a106f7260/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55af8d216d3b - std::panicking::begin_panic::h1a101e679bdacd8d [INFO] [stderr] at /rustc/9fa580b1175018b0a276b0bc68f9827a106f7260/library/std/src/panicking.rs:519:12 [INFO] [stderr] 14: 0x55af8d1e91cb - build_script_build::LibrarySearcher::try_locate_hdf5_library::h93ab65f8a4b17a9b [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13 [INFO] [stderr] 15: 0x55af8d1eaa25 - build_script_build::main::h716cfd564821567f [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:647:9 [INFO] [stderr] 16: 0x55af8d1f508b - core::ops::function::FnOnce::call_once::he36d668d5a5b61e2 [INFO] [stderr] at /rustc/9fa580b1175018b0a276b0bc68f9827a106f7260/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x55af8d1eeb4e - std::sys_common::backtrace::__rust_begin_short_backtrace::h64cf255c52223d8e [INFO] [stderr] at /rustc/9fa580b1175018b0a276b0bc68f9827a106f7260/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x55af8d1f6ca1 - std::rt::lang_start::{{closure}}::h877f0d4f5ca6ff27 [INFO] [stderr] at /rustc/9fa580b1175018b0a276b0bc68f9827a106f7260/library/std/src/rt.rs:66:18 [INFO] [stderr] 19: 0x55af8d4067fa - core::ops::function::impls:: for &F>::call_once::h31ee16c075ae2d62 [INFO] [stderr] at /rustc/9fa580b1175018b0a276b0bc68f9827a106f7260/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x55af8d4067fa - std::panicking::try::do_call::h3993344bf97066b6 [INFO] [stderr] at /rustc/9fa580b1175018b0a276b0bc68f9827a106f7260/library/std/src/panicking.rs:379:40 [INFO] [stderr] 21: 0x55af8d4067fa - std::panicking::try::h09e523df7c9c2d28 [INFO] [stderr] at /rustc/9fa580b1175018b0a276b0bc68f9827a106f7260/library/std/src/panicking.rs:343:19 [INFO] [stderr] 22: 0x55af8d4067fa - std::panic::catch_unwind::h9d4ddb10ebb815ff [INFO] [stderr] at /rustc/9fa580b1175018b0a276b0bc68f9827a106f7260/library/std/src/panic.rs:431:14 [INFO] [stderr] 23: 0x55af8d4067fa - std::rt::lang_start_internal::hc92e27a69d75de2a [INFO] [stderr] at /rustc/9fa580b1175018b0a276b0bc68f9827a106f7260/library/std/src/rt.rs:51:25 [INFO] [stderr] 24: 0x55af8d1f6c77 - std::rt::lang_start::heda265f2cf2afd17 [INFO] [stderr] at /rustc/9fa580b1175018b0a276b0bc68f9827a106f7260/library/std/src/rt.rs:65:5 [INFO] [stderr] 25: 0x55af8d1ec03a - main [INFO] [stderr] 26: 0x7f926d3510b3 - __libc_start_main [INFO] [stderr] 27: 0x55af8d1e40be - _start [INFO] [stderr] 28: 0x0 - [INFO] running `Command { std: "docker" "inspect" "e6e39ef946d4af2aef7d5183290018d51740d07d90ddf6f91f55b48522ea5c46", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e6e39ef946d4af2aef7d5183290018d51740d07d90ddf6f91f55b48522ea5c46", kill_on_drop: false }` [INFO] [stdout] e6e39ef946d4af2aef7d5183290018d51740d07d90ddf6f91f55b48522ea5c46