[INFO] cloning repository https://github.com/TianyiShi2001/protein
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/TianyiShi2001/protein" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTianyiShi2001%2Fprotein", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTianyiShi2001%2Fprotein'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] bd89e850f1b3ccaeabb7412abf1e3349aa6fd17b
[INFO] checking TianyiShi2001/protein against master#9fa580b1175018b0a276b0bc68f9827a106f7260 for pr-82565
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTianyiShi2001%2Fprotein" "/workspace/builds/worker-6/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-6/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/TianyiShi2001/protein on toolchain 9fa580b1175018b0a276b0bc68f9827a106f7260
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+9fa580b1175018b0a276b0bc68f9827a106f7260" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/TianyiShi2001/protein
[INFO] finished tweaking git repo https://github.com/TianyiShi2001/protein
[INFO] tweaked toml for git repo https://github.com/TianyiShi2001/protein written to /workspace/builds/worker-6/source/Cargo.toml
[INFO] crate git repo https://github.com/TianyiShi2001/protein already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+9fa580b1175018b0a276b0bc68f9827a106f7260" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:f2f6bcd4b43ebee4e173f653a26493129bdb64017c85f916b780ca7fbdbaa79d" "/opt/rustwide/cargo-home/bin/cargo" "+9fa580b1175018b0a276b0bc68f9827a106f7260" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 0bda3e399b435d3189514d78f8367835cbe246f58fe626f0a829a38e741974ed
[INFO] running `Command { std: "docker" "start" "-a" "0bda3e399b435d3189514d78f8367835cbe246f58fe626f0a829a38e741974ed", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "0bda3e399b435d3189514d78f8367835cbe246f58fe626f0a829a38e741974ed", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0bda3e399b435d3189514d78f8367835cbe246f58fe626f0a829a38e741974ed", kill_on_drop: false }`
[INFO] [stdout] 0bda3e399b435d3189514d78f8367835cbe246f58fe626f0a829a38e741974ed
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:f2f6bcd4b43ebee4e173f653a26493129bdb64017c85f916b780ca7fbdbaa79d" "/opt/rustwide/cargo-home/bin/cargo" "+9fa580b1175018b0a276b0bc68f9827a106f7260" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] fef5896aeccb5ddcc4842529208f01532b7ceb2d48e43bf8f98824a83e67c88f
[INFO] running `Command { std: "docker" "start" "-a" "fef5896aeccb5ddcc4842529208f01532b7ceb2d48e43bf8f98824a83e67c88f", kill_on_drop: false }`
[INFO] [stderr]    Compiling autocfg v1.0.1
[INFO] [stderr]    Compiling libc v0.2.79
[INFO] [stderr]    Compiling syn v1.0.45
[INFO] [stderr]    Compiling serde_derive v1.0.117
[INFO] [stderr]    Compiling serde v1.0.117
[INFO] [stderr]    Compiling log v0.4.11
[INFO] [stderr]    Compiling cc v1.0.61
[INFO] [stderr]    Compiling pkg-config v0.3.19
[INFO] [stderr]     Checking futures-core v0.3.6
[INFO] [stderr]    Compiling pin-project-internal v0.4.27
[INFO] [stderr]     Checking pin-project-lite v0.1.11
[INFO] [stderr]    Compiling serde_json v1.0.59
[INFO] [stderr]     Checking once_cell v1.4.1
[INFO] [stderr]     Checking foreign-types-shared v0.1.1
[INFO] [stderr]    Compiling openssl v0.10.30
[INFO] [stderr]     Checking tinyvec v0.3.4
[INFO] [stderr]     Checking futures-io v0.3.6
[INFO] [stderr]     Checking hashbrown v0.9.1
[INFO] [stderr]     Checking futures-sink v0.3.6
[INFO] [stderr]    Compiling native-tls v0.2.4
[INFO] [stderr]    Compiling lexical-core v0.7.4
[INFO] [stderr]     Checking dihedral v0.0.4
[INFO] [stderr]     Checking httpdate v0.3.2
[INFO] [stderr]     Checking arrayvec v0.5.1
[INFO] [stderr]    Compiling encoding_rs v0.8.24
[INFO] [stderr]     Checking dtoa v0.4.6
[INFO] [stderr]    Compiling byteorder v1.3.4
[INFO] [stderr]     Checking mime v0.3.16
[INFO] [stderr]     Checking protein-data v0.1.0 (/opt/rustwide/workdir/protein-data)
[INFO] [stderr]     Checking tracing-core v0.1.17
[INFO] [stderr]    Compiling nom v5.1.2
[INFO] [stderr]     Checking futures-task v0.3.6
[INFO] [stderr]     Checking foreign-types v0.3.2
[INFO] [stderr]     Checking futures-channel v0.3.6
[INFO] [stderr]     Checking unicode-normalization v0.1.13
[INFO] [stderr]     Checking http-body v0.3.1
[INFO] [stderr]    Compiling quote v1.0.7
[INFO] [stderr]     Checking csv-core v0.1.10
[INFO] [stderr]    Compiling unicase v2.6.0
[INFO] [stderr]    Compiling num-traits v0.2.12
[INFO] [stderr]    Compiling num-integer v0.1.43
[INFO] [stderr]    Compiling indexmap v1.6.0
[INFO] [stderr]    Compiling miniz_oxide v0.4.3
[INFO] [stderr]     Checking want v0.3.0
[INFO] [stderr]     Checking tracing v0.1.21
[INFO] [stderr]    Compiling mime_guess v2.0.3
[INFO] [stderr]     Checking regex-automata v0.1.9
[INFO] [stdout] warning: unused attribute
[INFO] [stdout]  --> protein-data/src/rama.rs:3:1
[INFO] [stdout]   |
[INFO] [stdout] 3 | #![rustfmt::skip]
[INFO] [stdout]   | ^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_attributes)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Checking iovec v0.1.4
[INFO] [stdout] warning: unused attribute
[INFO] [stdout]  --> protein-data/src/rama.rs:3:1
[INFO] [stdout]   |
[INFO] [stdout] 3 | #![rustfmt::skip]
[INFO] [stdout]   | ^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_attributes)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Checking net2 v0.2.35
[INFO] [stderr]     Checking time v0.1.44
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Checking num_cpus v1.13.0
[INFO] [stderr]     Checking socket2 v0.3.15
[INFO] [stderr]     Checking idna v0.2.0
[INFO] [stderr]     Checking flate2 v1.0.18
[INFO] [stderr]    Compiling openssl-sys v0.9.58
[INFO] [stderr]     Checking mio v0.6.22
[INFO] [stderr]     Checking atoi v0.3.2
[INFO] [stderr]     Checking url v2.1.1
[INFO] [stderr]     Checking tokio v0.2.22
[INFO] [stderr]     Checking tokio-util v0.3.1
[INFO] [stderr]     Checking tokio-tls v0.3.1
[INFO] [stderr]    Compiling strum_macros v0.19.4
[INFO] [stderr]     Checking strum v0.19.5
[INFO] [stderr]     Checking pin-project v0.4.27
[INFO] [stderr]     Checking futures-util v0.3.6
[INFO] [stderr]     Checking h2 v0.2.6
[INFO] [stderr]     Checking chrono v0.4.19
[INFO] [stderr]     Checking serde_urlencoded v0.6.1
[INFO] [stderr]     Checking bstr v0.2.14
[INFO] [stderr]     Checking hyper v0.13.8
[INFO] [stderr]     Checking csv v1.1.3
[INFO] [stderr]     Checking protein-core v0.1.7
[INFO] [stderr]     Checking protein-core v0.1.7 (/opt/rustwide/workdir/protein-core)
[INFO] [stderr]     Checking nom-pdb v0.0.9
[INFO] [stderr]     Checking protein-analysis v0.0.1 (/opt/rustwide/workdir/protein-analysis)
[INFO] [stdout] warning: associated function is never used: `is_n`
[INFO] [stdout]   --> protein-core/src/structure/atom.rs:57:19
[INFO] [stdout]    |
[INFO] [stdout] 57 |     pub(crate) fn is_n(&self) -> bool {
[INFO] [stdout]    |                   ^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function is never used: `is_c`
[INFO] [stdout]   --> protein-core/src/structure/atom.rs:60:19
[INFO] [stdout]    |
[INFO] [stdout] 60 |     pub(crate) fn is_c(&self) -> bool {
[INFO] [stdout]    |                   ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function is never used: `is_ca`
[INFO] [stdout]   --> protein-core/src/structure/atom.rs:63:19
[INFO] [stdout]    |
[INFO] [stdout] 63 |     pub(crate) fn is_ca(&self) -> bool {
[INFO] [stdout]    |                   ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function is never used: `is_o`
[INFO] [stdout]   --> protein-core/src/structure/atom.rs:66:19
[INFO] [stdout]    |
[INFO] [stdout] 66 |     pub(crate) fn is_o(&self) -> bool {
[INFO] [stdout]    |                   ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function is never used: `is_n`
[INFO] [stdout]   --> protein-core/src/structure/atom.rs:57:19
[INFO] [stdout]    |
[INFO] [stdout] 57 |     pub(crate) fn is_n(&self) -> bool {
[INFO] [stdout]    |                   ^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function is never used: `is_c`
[INFO] [stdout]   --> protein-core/src/structure/atom.rs:60:19
[INFO] [stdout]    |
[INFO] [stdout] 60 |     pub(crate) fn is_c(&self) -> bool {
[INFO] [stdout]    |                   ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function is never used: `is_ca`
[INFO] [stdout]   --> protein-core/src/structure/atom.rs:63:19
[INFO] [stdout]    |
[INFO] [stdout] 63 |     pub(crate) fn is_ca(&self) -> bool {
[INFO] [stdout]    |                   ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function is never used: `is_o`
[INFO] [stdout]   --> protein-core/src/structure/atom.rs:66:19
[INFO] [stdout]    |
[INFO] [stdout] 66 |     pub(crate) fn is_o(&self) -> bool {
[INFO] [stdout]    |                   ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 4 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 4 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Checking protein-io v0.0.1 (/opt/rustwide/workdir/protein-io)
[INFO] [stderr]     Checking hyper-tls v0.4.3
[INFO] [stderr]     Checking reqwest v0.10.8
[INFO] [stderr]     Checking protein-get v0.0.2 (/opt/rustwide/workdir/protein-get)
[INFO] [stderr]     Checking protein v0.0.5 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 31s
[INFO] running `Command { std: "docker" "inspect" "fef5896aeccb5ddcc4842529208f01532b7ceb2d48e43bf8f98824a83e67c88f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "fef5896aeccb5ddcc4842529208f01532b7ceb2d48e43bf8f98824a83e67c88f", kill_on_drop: false }`
[INFO] [stdout] fef5896aeccb5ddcc4842529208f01532b7ceb2d48e43bf8f98824a83e67c88f