[INFO] cloning repository https://github.com/guertinlab/kmer_mask_em
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/guertinlab/kmer_mask_em" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fguertinlab%2Fkmer_mask_em", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fguertinlab%2Fkmer_mask_em'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] c1ae4fc642bd6330c9db7a4cf31f9b304ff6a874
[INFO] checking guertinlab/kmer_mask_em against master#3e826bb11228508fbe749e594038d6727208aa94 for pr-82322
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fguertinlab%2Fkmer_mask_em" "/workspace/builds/worker-9/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-9/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/guertinlab/kmer_mask_em on toolchain 3e826bb11228508fbe749e594038d6727208aa94
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+3e826bb11228508fbe749e594038d6727208aa94" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/guertinlab/kmer_mask_em
[INFO] finished tweaking git repo https://github.com/guertinlab/kmer_mask_em
[INFO] tweaked toml for git repo https://github.com/guertinlab/kmer_mask_em written to /workspace/builds/worker-9/source/Cargo.toml
[INFO] crate git repo https://github.com/guertinlab/kmer_mask_em already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+3e826bb11228508fbe749e594038d6727208aa94" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr] error: the lock file /workspace/builds/worker-9/source/Cargo.lock needs to be updated but --locked was passed to prevent this
[INFO] [stderr] If you want to try to generate the lock file without accessing the network, use the --offline flag.
[INFO] the lockfile is outdated, regenerating it
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+3e826bb11228508fbe749e594038d6727208aa94" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+3e826bb11228508fbe749e594038d6727208aa94" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded docopt v0.7.0
[INFO] [stderr]   Downloaded deque v0.3.2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:f2f6bcd4b43ebee4e173f653a26493129bdb64017c85f916b780ca7fbdbaa79d" "/opt/rustwide/cargo-home/bin/cargo" "+3e826bb11228508fbe749e594038d6727208aa94" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] f006b0a17b3d4ba0f87ec41793df0982e69cd33bf6a155c911adf5a96599f44c
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "f006b0a17b3d4ba0f87ec41793df0982e69cd33bf6a155c911adf5a96599f44c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "f006b0a17b3d4ba0f87ec41793df0982e69cd33bf6a155c911adf5a96599f44c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f006b0a17b3d4ba0f87ec41793df0982e69cd33bf6a155c911adf5a96599f44c", kill_on_drop: false }`
[INFO] [stdout] f006b0a17b3d4ba0f87ec41793df0982e69cd33bf6a155c911adf5a96599f44c
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:f2f6bcd4b43ebee4e173f653a26493129bdb64017c85f916b780ca7fbdbaa79d" "/opt/rustwide/cargo-home/bin/cargo" "+3e826bb11228508fbe749e594038d6727208aa94" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 3ac1f29f9dd6c4c97da0c6dbae03e5df77e0030ad3dbb30462a5db0911b60496
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "3ac1f29f9dd6c4c97da0c6dbae03e5df77e0030ad3dbb30462a5db0911b60496", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.88
[INFO] [stderr]     Checking ucd-util v0.1.8
[INFO] [stderr]     Checking utf8-ranges v1.0.4
[INFO] [stderr]     Checking deque v0.3.2
[INFO] [stderr]     Checking rustc-serialize v0.3.24
[INFO] [stderr]    Compiling regex v0.2.11
[INFO] [stderr]     Checking tabwriter v1.2.1
[INFO] [stderr]     Checking aho-corasick v0.6.10
[INFO] [stderr]     Checking regex-syntax v0.5.6
[INFO] [stderr]     Checking rand v0.4.6
[INFO] [stderr]     Checking num_cpus v1.13.0
[INFO] [stderr]     Checking rand v0.3.23
[INFO] [stderr]     Checking rayon v0.6.0
[INFO] [stderr]     Checking docopt v0.7.0
[INFO] [stderr]     Checking kmermask_em v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 14.25s
[INFO] running `Command { std: "docker" "inspect" "3ac1f29f9dd6c4c97da0c6dbae03e5df77e0030ad3dbb30462a5db0911b60496", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3ac1f29f9dd6c4c97da0c6dbae03e5df77e0030ad3dbb30462a5db0911b60496", kill_on_drop: false }`
[INFO] [stdout] 3ac1f29f9dd6c4c97da0c6dbae03e5df77e0030ad3dbb30462a5db0911b60496