[INFO] fetching crate netcdf-sys 0.3.4... [INFO] checking netcdf-sys-0.3.4 against try#9c1dcf141bc0875407c4eb36972857bd3db713e2 for pr-81863 [INFO] extracting crate netcdf-sys 0.3.4 into /workspace/builds/worker-2/source [INFO] validating manifest of crates.io crate netcdf-sys 0.3.4 on toolchain 9c1dcf141bc0875407c4eb36972857bd3db713e2 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+9c1dcf141bc0875407c4eb36972857bd3db713e2" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate netcdf-sys 0.3.4 [INFO] finished tweaking crates.io crate netcdf-sys 0.3.4 [INFO] tweaked toml for crates.io crate netcdf-sys 0.3.4 written to /workspace/builds/worker-2/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+9c1dcf141bc0875407c4eb36972857bd3db713e2" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+9c1dcf141bc0875407c4eb36972857bd3db713e2" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded winreg v0.8.0 [INFO] [stderr] Downloaded hdf5-sys v0.7.1 [INFO] [stderr] Downloaded hdf5-src v0.7.1 [INFO] [stderr] Downloaded netcdf-src v0.1.3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:21f1ed92105a0ef9b0d27ad8bdeb7f36f9f01ac17fffe3a3f3dc5241fc25d8f4" "/opt/rustwide/cargo-home/bin/cargo" "+9c1dcf141bc0875407c4eb36972857bd3db713e2" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] a1c97f67d67f75f25b1e5f0efd8f4065189f3f1edfe6d6910f2850eca4c930ee [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "a1c97f67d67f75f25b1e5f0efd8f4065189f3f1edfe6d6910f2850eca4c930ee", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "a1c97f67d67f75f25b1e5f0efd8f4065189f3f1edfe6d6910f2850eca4c930ee", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a1c97f67d67f75f25b1e5f0efd8f4065189f3f1edfe6d6910f2850eca4c930ee", kill_on_drop: false }` [INFO] [stdout] a1c97f67d67f75f25b1e5f0efd8f4065189f3f1edfe6d6910f2850eca4c930ee [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:21f1ed92105a0ef9b0d27ad8bdeb7f36f9f01ac17fffe3a3f3dc5241fc25d8f4" "/opt/rustwide/cargo-home/bin/cargo" "+9c1dcf141bc0875407c4eb36972857bd3db713e2" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] ddc23082a032b28f8ab7dadbd0c101b60a66a64ed714d740887b34dffbcba60a [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "ddc23082a032b28f8ab7dadbd0c101b60a66a64ed714d740887b34dffbcba60a", kill_on_drop: false }` [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling once_cell v1.5.2 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling regex-syntax v0.6.22 [INFO] [stderr] Compiling libc v0.2.85 [INFO] [stderr] Compiling netcdf-sys v0.3.4 (/opt/rustwide/workdir) [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Compiling libz-sys v1.1.2 [INFO] [stderr] Compiling libloading v0.6.7 [INFO] [stderr] Compiling thread_local v1.1.3 [INFO] [stderr] Compiling aho-corasick v0.7.15 [INFO] [stderr] Compiling regex v1.4.3 [INFO] [stderr] Compiling hdf5-sys v0.7.1 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.1` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-e36b4c7977978f56/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x560079f90510 - std::backtrace_rs::backtrace::libunwind::trace::hb4de9797f80b7b8c [INFO] [stderr] at /rustc/9c1dcf141bc0875407c4eb36972857bd3db713e2/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x560079f90510 - std::backtrace_rs::backtrace::trace_unsynchronized::h59566d0bd20efff7 [INFO] [stderr] at /rustc/9c1dcf141bc0875407c4eb36972857bd3db713e2/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x560079f90510 - std::sys_common::backtrace::_print_fmt::hcfa5ce6be50275d4 [INFO] [stderr] at /rustc/9c1dcf141bc0875407c4eb36972857bd3db713e2/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x560079f90510 - ::fmt::hd8c307a38b9bab04 [INFO] [stderr] at /rustc/9c1dcf141bc0875407c4eb36972857bd3db713e2/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x560079fac65c - core::fmt::write::h3868db8542c90941 [INFO] [stderr] at /rustc/9c1dcf141bc0875407c4eb36972857bd3db713e2/library/core/src/fmt/mod.rs:1096:17 [INFO] [stderr] 5: 0x560079f8cdb2 - std::io::Write::write_fmt::hab90295d5a0f197d [INFO] [stderr] at /rustc/9c1dcf141bc0875407c4eb36972857bd3db713e2/library/std/src/io/mod.rs:1568:15 [INFO] [stderr] 6: 0x560079f92595 - std::sys_common::backtrace::_print::h19224910b8700cf1 [INFO] [stderr] at /rustc/9c1dcf141bc0875407c4eb36972857bd3db713e2/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x560079f92595 - std::sys_common::backtrace::print::h25dedfa68c5fb84a [INFO] [stderr] at /rustc/9c1dcf141bc0875407c4eb36972857bd3db713e2/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x560079f92595 - std::panicking::default_hook::{{closure}}::h12c5765653a72a42 [INFO] [stderr] at /rustc/9c1dcf141bc0875407c4eb36972857bd3db713e2/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x560079f920f3 - std::panicking::default_hook::he65cee71c4209f0c [INFO] [stderr] at /rustc/9c1dcf141bc0875407c4eb36972857bd3db713e2/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x560079f92d31 - std::panicking::rust_panic_with_hook::h01a674d863fe0d8a [INFO] [stderr] at /rustc/9c1dcf141bc0875407c4eb36972857bd3db713e2/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x560079e729ee - std::panicking::begin_panic::{{closure}}::ha0c3d188fa3d0bd8 [INFO] [stderr] at /rustc/9c1dcf141bc0875407c4eb36972857bd3db713e2/library/std/src/panicking.rs:520:9 [INFO] [stderr] 12: 0x560079e92919 - std::sys_common::backtrace::__rust_end_short_backtrace::hb1ea426bfce47468 [INFO] [stderr] at /rustc/9c1dcf141bc0875407c4eb36972857bd3db713e2/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x560079e7291b - std::panicking::begin_panic::h6fdfbaf195d933a4 [INFO] [stderr] at /rustc/9c1dcf141bc0875407c4eb36972857bd3db713e2/library/std/src/panicking.rs:519:12 [INFO] [stderr] 14: 0x560079d6809b - build_script_build::LibrarySearcher::try_locate_hdf5_library::h4667a334260beb9c [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13 [INFO] [stderr] 15: 0x560079d698f5 - build_script_build::main::h3504d65e43055870 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:647:9 [INFO] [stderr] 16: 0x560079d758db - core::ops::function::FnOnce::call_once::h212ce449c5be83fa [INFO] [stderr] at /rustc/9c1dcf141bc0875407c4eb36972857bd3db713e2/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x560079d6e20e - std::sys_common::backtrace::__rust_begin_short_backtrace::hf28973f4b58abbee [INFO] [stderr] at /rustc/9c1dcf141bc0875407c4eb36972857bd3db713e2/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x560079d768b1 - std::rt::lang_start::{{closure}}::h2d292e94b2de67fd [INFO] [stderr] at /rustc/9c1dcf141bc0875407c4eb36972857bd3db713e2/library/std/src/rt.rs:66:18 [INFO] [stderr] 19: 0x560079f93157 - core::ops::function::impls:: for &F>::call_once::h2c4fd7d4128112a8 [INFO] [stderr] at /rustc/9c1dcf141bc0875407c4eb36972857bd3db713e2/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x560079f93157 - std::panicking::try::do_call::h41fb7dbbbe7bece6 [INFO] [stderr] at /rustc/9c1dcf141bc0875407c4eb36972857bd3db713e2/library/std/src/panicking.rs:379:40 [INFO] [stderr] 21: 0x560079f93157 - std::panicking::try::hd38008ccba72bce1 [INFO] [stderr] at /rustc/9c1dcf141bc0875407c4eb36972857bd3db713e2/library/std/src/panicking.rs:343:19 [INFO] [stderr] 22: 0x560079f93157 - std::panic::catch_unwind::h057e765cd60f2d13 [INFO] [stderr] at /rustc/9c1dcf141bc0875407c4eb36972857bd3db713e2/library/std/src/panic.rs:431:14 [INFO] [stderr] 23: 0x560079f93157 - std::rt::lang_start_internal::hdb9d0b9d2cdcda8b [INFO] [stderr] at /rustc/9c1dcf141bc0875407c4eb36972857bd3db713e2/library/std/src/rt.rs:51:25 [INFO] [stderr] 24: 0x560079d76887 - std::rt::lang_start::h0788a5341ca959f1 [INFO] [stderr] at /rustc/9c1dcf141bc0875407c4eb36972857bd3db713e2/library/std/src/rt.rs:65:5 [INFO] [stderr] 25: 0x560079d6af3a - main [INFO] [stderr] 26: 0x7f92e907e0b3 - __libc_start_main [INFO] [stderr] 27: 0x560079d630be - _start [INFO] [stderr] 28: 0x0 - [INFO] running `Command { std: "docker" "inspect" "ddc23082a032b28f8ab7dadbd0c101b60a66a64ed714d740887b34dffbcba60a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ddc23082a032b28f8ab7dadbd0c101b60a66a64ed714d740887b34dffbcba60a", kill_on_drop: false }` [INFO] [stdout] ddc23082a032b28f8ab7dadbd0c101b60a66a64ed714d740887b34dffbcba60a