[INFO] fetching crate varlociraptor 2.6.0... [INFO] checking varlociraptor-2.6.0 against master#36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923 for pr-81863 [INFO] extracting crate varlociraptor 2.6.0 into /workspace/builds/worker-5/source [INFO] validating manifest of crates.io crate varlociraptor 2.6.0 on toolchain 36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate varlociraptor 2.6.0 [INFO] finished tweaking crates.io crate varlociraptor 2.6.0 [INFO] tweaked toml for crates.io crate varlociraptor 2.6.0 written to /workspace/builds/worker-5/source/Cargo.toml [INFO] crate crates.io crate varlociraptor 2.6.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:21f1ed92105a0ef9b0d27ad8bdeb7f36f9f01ac17fffe3a3f3dc5241fc25d8f4" "/opt/rustwide/cargo-home/bin/cargo" "+36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 3f2fbd5442baf903ef30c2b4ef05694343a4b16d82e42290c202b698741d97de [INFO] running `Command { std: "docker" "start" "-a" "3f2fbd5442baf903ef30c2b4ef05694343a4b16d82e42290c202b698741d97de", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "3f2fbd5442baf903ef30c2b4ef05694343a4b16d82e42290c202b698741d97de", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3f2fbd5442baf903ef30c2b4ef05694343a4b16d82e42290c202b698741d97de", kill_on_drop: false }` [INFO] [stdout] 3f2fbd5442baf903ef30c2b4ef05694343a4b16d82e42290c202b698741d97de [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:21f1ed92105a0ef9b0d27ad8bdeb7f36f9f01ac17fffe3a3f3dc5241fc25d8f4" "/opt/rustwide/cargo-home/bin/cargo" "+36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] d1e761a83e147f6904065a3d31e09f1402bf17947c4fb26126bccaf6dea52bba [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "d1e761a83e147f6904065a3d31e09f1402bf17947c4fb26126bccaf6dea52bba", kill_on_drop: false }` [INFO] [stderr] Compiling serde_derive v1.0.118 [INFO] [stderr] Compiling serde v1.0.118 [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling proc-macro-hack v0.5.19 [INFO] [stderr] Compiling log v0.4.11 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling winapi-build v0.1.1 [INFO] [stderr] Compiling proc-macro-nested v0.1.6 [INFO] [stderr] Checking winapi v0.2.8 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling doc-comment v0.3.3 [INFO] [stderr] Checking futures-core v0.3.9 [INFO] [stderr] Checking regex-syntax v0.6.21 [INFO] [stderr] Checking futures-sink v0.3.9 [INFO] [stderr] Compiling fs_extra v1.2.0 [INFO] [stderr] Checking scopeguard v0.3.3 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Checking once_cell v1.5.2 [INFO] [stderr] Checking quick-error v1.2.3 [INFO] [stderr] Checking futures-io v0.3.9 [INFO] [stderr] Compiling askama_escape v0.2.0 [INFO] [stderr] Checking pin-project-lite v0.2.1 [INFO] [stderr] Checking rawpointer v0.1.0 [INFO] [stderr] Compiling humansize v1.1.0 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Compiling anyhow v1.0.37 [INFO] [stderr] Checking array-macro v1.0.5 [INFO] [stderr] Compiling bio v0.32.0 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking yaml-rust v0.3.5 [INFO] [stderr] Checking fixedbitset v0.2.0 [INFO] [stderr] Compiling either v1.6.1 [INFO] [stderr] Checking bit-vec v0.6.3 [INFO] [stderr] Checking utf8-ranges v0.1.3 [INFO] [stderr] Compiling paste v1.0.4 [INFO] [stderr] Checking dtoa v0.4.7 [INFO] [stderr] Checking bytecount v0.6.2 [INFO] [stderr] Checking linear-map v1.2.0 [INFO] [stderr] Checking ieee754 v0.2.6 [INFO] [stderr] Checking regex-syntax v0.3.9 [INFO] [stderr] Checking strum v0.18.0 [INFO] [stderr] Checking fixedbitset v0.1.9 [INFO] [stderr] Checking triple_accel v0.3.4 [INFO] [stderr] Checking ordermap v0.3.5 [INFO] [stderr] Checking percent-encoding v1.0.1 [INFO] [stderr] Checking lru_time_cache v0.10.0 [INFO] [stderr] Checking lazy_static v0.1.16 [INFO] [stderr] Compiling crossbeam-utils v0.7.2 [INFO] [stderr] Compiling num-iter v0.1.42 [INFO] [stderr] Compiling memoffset v0.5.6 [INFO] [stderr] Compiling crossbeam-epoch v0.8.2 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Checking thread_local v1.1.0 [INFO] [stderr] Compiling GSL-sys v2.0.1 [INFO] [stderr] Checking tinyvec v1.1.0 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Checking futures-channel v0.3.9 [INFO] [stderr] Checking lock_api v0.1.5 [INFO] [stderr] Checking itertools v0.8.2 [INFO] [stderr] Checking futures-task v0.3.9 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling kernel32-sys v0.2.2 [INFO] [stderr] Checking yaml-rust v0.4.5 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Checking bit-set v0.5.2 [INFO] [stderr] Compiling libc v0.2.82 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Checking petgraph v0.4.13 [INFO] [stderr] Checking rand_os v0.1.3 [INFO] [stderr] Checking getrandom v0.1.16 [INFO] [stderr] Checking time v0.1.44 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking memchr v0.1.11 [INFO] [stderr] Checking rand v0.4.6 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Checking smallvec v0.6.13 [INFO] [stderr] Checking regex-automata v0.1.9 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Compiling parking_lot_core v0.4.0 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling nom v4.2.3 [INFO] [stderr] Checking aho-corasick v0.7.15 [INFO] [stderr] Checking csv-core v0.1.10 [INFO] [stderr] Checking unicode-normalization v0.1.16 [INFO] [stderr] Checking log v0.3.9 [INFO] [stderr] Checking num-integer v0.1.44 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking approx v0.3.2 [INFO] [stderr] Checking ordered-float v1.1.1 [INFO] [stderr] Checking counter v0.5.2 [INFO] [stderr] Compiling jobserver v0.1.21 [INFO] [stderr] Checking aho-corasick v0.5.3 [INFO] [stderr] Checking rand v0.6.5 [INFO] [stderr] Checking petgraph v0.5.1 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Compiling strum_macros v0.20.1 [INFO] [stderr] Compiling derive-new v0.5.8 [INFO] [stderr] Compiling enum-map-derive v0.4.6 [INFO] [stderr] Compiling snafu-derive v0.6.10 [INFO] [stderr] Compiling thiserror-impl v1.0.23 [INFO] [stderr] Compiling pest_generator v2.1.3 [INFO] [stderr] Compiling strum_macros v0.18.0 [INFO] [stderr] Compiling getset v0.0.9 [INFO] [stderr] Compiling typed-builder v0.7.1 [INFO] [stderr] Checking rand v0.3.23 [INFO] [stderr] Checking mime v0.2.6 [INFO] [stderr] Compiling shrinkwraprs v0.2.3 [INFO] [stderr] Checking crossbeam-queue v0.2.3 [INFO] [stderr] Checking crossbeam-channel v0.4.4 [INFO] [stderr] Checking chrono v0.4.19 [INFO] [stderr] Compiling cc v1.0.66 [INFO] [stderr] Checking thread-id v2.0.0 [INFO] [stderr] Compiling derefable v0.1.0 [INFO] [stderr] Checking idna v0.2.0 [INFO] [stderr] Checking idna v0.1.5 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking GSL v2.0.1 [INFO] [stderr] Checking regex v1.4.2 [INFO] [stderr] Compiling futures-macro v0.3.9 [INFO] [stderr] Compiling format-bytes-macros v0.1.2 [INFO] [stderr] Checking statrs v0.11.0 [INFO] [stderr] Checking crossbeam-deque v0.7.3 [INFO] [stderr] Checking rayon-core v1.9.0 [INFO] [stderr] Checking num v0.1.42 [INFO] [stderr] Checking enum-map v0.6.4 [INFO] [stderr] Checking thread_local v0.2.7 [INFO] [stderr] Compiling pest_derive v2.1.0 [INFO] [stderr] Compiling openssl-src v111.13.0+1.1.1i [INFO] [stderr] Checking fern v0.5.9 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking url v1.7.2 [INFO] [stderr] Checking url v2.2.0 [INFO] [stderr] Compiling structopt-derive v0.4.14 [INFO] [stderr] Compiling getset v0.1.1 [INFO] [stderr] Checking parking_lot v0.7.1 [INFO] [stderr] Checking thiserror v1.0.23 [INFO] [stderr] Checking rulinalg v0.3.7 [INFO] [stderr] Checking chrono v0.2.25 [INFO] [stderr] Checking crossbeam v0.7.3 [INFO] [stderr] Checking regex v0.1.80 [INFO] [stderr] Checking rayon v1.5.0 [INFO] [stderr] Checking format-bytes v0.1.3 [INFO] [stderr] Compiling libz-sys v1.1.2 [INFO] [stderr] Compiling openssl-sys v0.9.60 [INFO] [stderr] Compiling curl-sys v0.4.39+curl-7.74.0 [INFO] [stderr] Compiling bzip2-sys v0.1.9+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.17 [INFO] [stderr] Compiling jemalloc-sys v0.3.2 [INFO] [stderr] Compiling hts-sys v1.11.1-fix1 [INFO] [stderr] Compiling miniz-sys v0.1.12 [INFO] [stderr] Checking once_cell v0.1.8 [INFO] [stderr] Checking hyper v0.10.16 [INFO] [stderr] Checking statrs v0.12.0 [INFO] [stderr] Checking tempfile v3.1.0 [INFO] [stderr] Checking futures-util v0.3.9 [INFO] [stderr] Checking snafu v0.6.10 [INFO] [stderr] Checking env_logger v0.3.5 [INFO] [stderr] Checking ftp v3.0.1 [INFO] [stderr] Checking cached v0.9.0 [INFO] [stderr] Checking rusty-machine v0.5.4 [INFO] [stderr] Checking flate2 v0.2.20 [INFO] [stderr] Checking futures-executor v0.3.9 [INFO] [stderr] Checking futures v0.3.9 [INFO] [stderr] Compiling toml v0.4.10 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking bio-types v0.10.0 [INFO] [stderr] Checking bstr v0.2.14 [INFO] [stderr] Checking serde_json v1.0.61 [INFO] [stderr] Checking multimap v0.8.2 [INFO] [stderr] Checking serde_yaml v0.8.15 [INFO] [stderr] Checking half v1.6.0 [INFO] [stderr] Checking bincode v1.3.1 [INFO] [stderr] Checking clap v2.33.3 [INFO] [stderr] Checking csv v1.1.5 [INFO] [stderr] Checking askama_shared v0.8.0 [INFO] [stderr] Checking eval v0.4.3 [INFO] [stderr] Compiling askama_derive v0.8.0 [INFO] [stderr] Checking structopt v0.3.21 [INFO] [stderr] Checking askama v0.8.0 [INFO] [stderr] Checking rust-htslib v0.36.0 [INFO] [stderr] Checking jemallocator v0.3.2 [INFO] [stderr] Checking varlociraptor v2.6.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: associated function is never used: `effective_mutation_rate` [INFO] [stdout] --> src/estimation/effective_mutation_rate.rs:25:19 [INFO] [stdout] | [INFO] [stdout] 25 | pub(crate) fn effective_mutation_rate(&self) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `estimate` [INFO] [stdout] --> src/estimation/effective_mutation_rate.rs:30:15 [INFO] [stdout] | [INFO] [stdout] 30 | pub(crate) fn estimate>( [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 6m 06s [INFO] running `Command { std: "docker" "inspect" "d1e761a83e147f6904065a3d31e09f1402bf17947c4fb26126bccaf6dea52bba", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d1e761a83e147f6904065a3d31e09f1402bf17947c4fb26126bccaf6dea52bba", kill_on_drop: false }` [INFO] [stdout] d1e761a83e147f6904065a3d31e09f1402bf17947c4fb26126bccaf6dea52bba