[INFO] fetching crate d4-hts 0.1.16... [INFO] checking d4-hts-0.1.16 against master#36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923 for pr-81863 [INFO] extracting crate d4-hts 0.1.16 into /workspace/builds/worker-6/source [INFO] validating manifest of crates.io crate d4-hts 0.1.16 on toolchain 36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate d4-hts 0.1.16 [INFO] finished tweaking crates.io crate d4-hts 0.1.16 [INFO] tweaked toml for crates.io crate d4-hts 0.1.16 written to /workspace/builds/worker-6/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:21f1ed92105a0ef9b0d27ad8bdeb7f36f9f01ac17fffe3a3f3dc5241fc25d8f4" "/opt/rustwide/cargo-home/bin/cargo" "+36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] cc505e7326ff7db22d2bcc44129695444c13bb5d0512a037ac3c93b14cc1a972 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "cc505e7326ff7db22d2bcc44129695444c13bb5d0512a037ac3c93b14cc1a972", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "cc505e7326ff7db22d2bcc44129695444c13bb5d0512a037ac3c93b14cc1a972", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "cc505e7326ff7db22d2bcc44129695444c13bb5d0512a037ac3c93b14cc1a972", kill_on_drop: false }` [INFO] [stdout] cc505e7326ff7db22d2bcc44129695444c13bb5d0512a037ac3c93b14cc1a972 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:21f1ed92105a0ef9b0d27ad8bdeb7f36f9f01ac17fffe3a3f3dc5241fc25d8f4" "/opt/rustwide/cargo-home/bin/cargo" "+36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] dddfa8e5710e0f008415372530fa3851e2824f0f80c06aed53cfd890311c9e0d [INFO] running `Command { std: "docker" "start" "-a" "dddfa8e5710e0f008415372530fa3851e2824f0f80c06aed53cfd890311c9e0d", kill_on_drop: false }` [INFO] [stderr] Compiling version_check v0.9.2 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling once_cell v1.5.2 [INFO] [stderr] Compiling proc-macro2 v1.0.24 [INFO] [stderr] Compiling regex-syntax v0.6.22 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling termcolor v1.1.2 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling libloading v0.6.7 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling libc v0.2.85 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Compiling thread_local v1.1.3 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling aho-corasick v0.7.15 [INFO] [stderr] Compiling clang-sys v1.0.3 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling quote v1.0.8 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling regex v1.4.3 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling d4-hts v0.1.16 (/opt/rustwide/workdir) [INFO] [stderr] error: failed to run custom build command for `d4-hts v0.1.16 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/d4-hts-252736cc67604372/build-script-build` (exit code: 101) [INFO] [stderr] --- stderr [INFO] [stderr] + pushd /opt/rustwide/target/debug/build/d4-hts-9356b2841089105f/out [INFO] [stderr] + HTSLIB_VERSION=1.11 [INFO] [stderr] + rm -rf /opt/rustwide/target/debug/build/d4-hts-9356b2841089105f/out/htslib [INFO] [stderr] + git clone -b 1.11 https://github.com/samtools/htslib.git [INFO] [stderr] Cloning into 'htslib'... [INFO] [stderr] fatal: unable to access 'https://github.com/samtools/htslib.git/': Could not resolve host: github.com [INFO] [stderr] thread 'main' panicked at 'assertion failed: Command::new(\"bash\").args(&[\"build_htslib.sh\",\n &version]).stdout(std::process::Stdio::null()).spawn().expect(\"Unable to build htslib\").wait().unwrap().success()', build.rs:34:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x564d3f336080 - std::backtrace_rs::backtrace::libunwind::trace::hb4de9797f80b7b8c [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x564d3f336080 - std::backtrace_rs::backtrace::trace_unsynchronized::h59566d0bd20efff7 [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x564d3f336080 - std::sys_common::backtrace::_print_fmt::hcfa5ce6be50275d4 [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x564d3f336080 - ::fmt::hd8c307a38b9bab04 [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x564d3f358b3c - core::fmt::write::h3868db8542c90941 [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/core/src/fmt/mod.rs:1096:17 [INFO] [stderr] 5: 0x564d3f332332 - std::io::Write::write_fmt::hab90295d5a0f197d [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/io/mod.rs:1568:15 [INFO] [stderr] 6: 0x564d3f3383a5 - std::sys_common::backtrace::_print::h19224910b8700cf1 [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x564d3f3383a5 - std::sys_common::backtrace::print::h25dedfa68c5fb84a [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x564d3f3383a5 - std::panicking::default_hook::{{closure}}::h12c5765653a72a42 [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x564d3f337f03 - std::panicking::default_hook::he65cee71c4209f0c [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x564d3f338b41 - std::panicking::rust_panic_with_hook::h01a674d863fe0d8a [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x564d3f338657 - std::panicking::begin_panic_handler::{{closure}}::h9b9fecf185178864 [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/panicking.rs:495:13 [INFO] [stderr] 12: 0x564d3f33651c - std::sys_common::backtrace::__rust_end_short_backtrace::h57be46a42dc7f24b [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x564d3f3385e9 - rust_begin_unwind [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/panicking.rs:493:5 [INFO] [stderr] 14: 0x564d3f357221 - core::panicking::panic_fmt::h20225113c4a2f8fd [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/core/src/panicking.rs:92:14 [INFO] [stderr] 15: 0x564d3f35716d - core::panicking::panic::h35b77276aa4b0c12 [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/core/src/panicking.rs:50:5 [INFO] [stderr] 16: 0x564d3ed9f9ac - build_script_build::build_own_htslib::he73c786e41034cd7 [INFO] [stderr] at /opt/rustwide/workdir/build.rs:34:5 [INFO] [stderr] 17: 0x564d3ed9feb4 - build_script_build::main::h9dc6793636f53348 [INFO] [stderr] at /opt/rustwide/workdir/build.rs:66:9 [INFO] [stderr] 18: 0x564d3eda0a7b - core::ops::function::FnOnce::call_once::h09532a9876051a6a [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 19: 0x564d3eda0e0e - std::sys_common::backtrace::__rust_begin_short_backtrace::h08279b8d774c486a [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 20: 0x564d3eda1701 - std::rt::lang_start::{{closure}}::h8eb96f20ab53c2c1 [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/rt.rs:66:18 [INFO] [stderr] 21: 0x564d3f338f67 - core::ops::function::impls:: for &F>::call_once::h2c4fd7d4128112a8 [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 22: 0x564d3f338f67 - std::panicking::try::do_call::h41fb7dbbbe7bece6 [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/panicking.rs:379:40 [INFO] [stderr] 23: 0x564d3f338f67 - std::panicking::try::hd38008ccba72bce1 [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/panicking.rs:343:19 [INFO] [stderr] 24: 0x564d3f338f67 - std::panic::catch_unwind::h057e765cd60f2d13 [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/panic.rs:431:14 [INFO] [stderr] 25: 0x564d3f338f67 - std::rt::lang_start_internal::hdb9d0b9d2cdcda8b [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/rt.rs:51:25 [INFO] [stderr] 26: 0x564d3eda16d7 - std::rt::lang_start::h3b23e3752a60e8e1 [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/rt.rs:65:5 [INFO] [stderr] 27: 0x564d3eda04da - main [INFO] [stderr] 28: 0x7f350d9890b3 - __libc_start_main [INFO] [stderr] 29: 0x564d3ed9f0be - _start [INFO] [stderr] 30: 0x0 - [INFO] running `Command { std: "docker" "inspect" "dddfa8e5710e0f008415372530fa3851e2824f0f80c06aed53cfd890311c9e0d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "dddfa8e5710e0f008415372530fa3851e2824f0f80c06aed53cfd890311c9e0d", kill_on_drop: false }` [INFO] [stdout] dddfa8e5710e0f008415372530fa3851e2824f0f80c06aed53cfd890311c9e0d