[INFO] cloning repository https://github.com/clemson-cal/app-binary2d [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/clemson-cal/app-binary2d" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclemson-cal%2Fapp-binary2d", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclemson-cal%2Fapp-binary2d'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 8dc5bd7b70f8bcc4f5237715e660c5ee90e62bf8 [INFO] checking clemson-cal/app-binary2d against master#36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923 for pr-81863 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclemson-cal%2Fapp-binary2d" "/workspace/builds/worker-6/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-6/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/clemson-cal/app-binary2d on toolchain 36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/clemson-cal/app-binary2d [INFO] finished tweaking git repo https://github.com/clemson-cal/app-binary2d [INFO] tweaked toml for git repo https://github.com/clemson-cal/app-binary2d written to /workspace/builds/worker-6/source/Cargo.toml [INFO] crate git repo https://github.com/clemson-cal/app-binary2d already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded serial_test_derive v0.5.1 [INFO] [stderr] Downloaded serial_test v0.5.1 [INFO] [stderr] Downloaded winreg v0.8.0 [INFO] [stderr] Downloaded hdf5-sys v0.7.1 [INFO] [stderr] Downloaded hdf5-derive v0.7.1 [INFO] [stderr] Downloaded tokio v0.3.7 [INFO] [stderr] Downloaded hdf5 v0.7.1 [INFO] [stderr] Downloaded hdf5-types v0.7.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:21f1ed92105a0ef9b0d27ad8bdeb7f36f9f01ac17fffe3a3f3dc5241fc25d8f4" "/opt/rustwide/cargo-home/bin/cargo" "+36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 7a27f8e074682a5f62599bdaffeec81b1cd34823fc6e6d8c7b09f750c3f55363 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "7a27f8e074682a5f62599bdaffeec81b1cd34823fc6e6d8c7b09f750c3f55363", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "7a27f8e074682a5f62599bdaffeec81b1cd34823fc6e6d8c7b09f750c3f55363", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7a27f8e074682a5f62599bdaffeec81b1cd34823fc6e6d8c7b09f750c3f55363", kill_on_drop: false }` [INFO] [stdout] 7a27f8e074682a5f62599bdaffeec81b1cd34823fc6e6d8c7b09f750c3f55363 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:21f1ed92105a0ef9b0d27ad8bdeb7f36f9f01ac17fffe3a3f3dc5241fc25d8f4" "/opt/rustwide/cargo-home/bin/cargo" "+36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 5fdd92b954791a02689ab76642eef456f00deec45d75929861e427460e455a7e [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "5fdd92b954791a02689ab76642eef456f00deec45d75929861e427460e455a7e", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling syn v1.0.60 [INFO] [stderr] Compiling libc v0.2.84 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Compiling once_cell v1.5.2 [INFO] [stderr] Compiling regex-syntax v0.6.22 [INFO] [stderr] Checking cfg-if v1.0.0 [INFO] [stderr] Compiling ndarray v0.14.0 [INFO] [stderr] Checking smallvec v1.6.1 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling version_check v0.9.2 [INFO] [stderr] Compiling hdf5 v0.7.1 [INFO] [stderr] Compiling maybe-uninit v2.0.0 [INFO] [stderr] Checking ascii v1.0.0 [INFO] [stderr] Checking cfg-if v0.1.10 [INFO] [stderr] Compiling proc-macro-nested v0.1.7 [INFO] [stderr] Checking pin-project-lite v0.2.4 [INFO] [stderr] Checking futures-sink v0.3.12 [INFO] [stderr] Checking futures-core v0.3.12 [INFO] [stderr] Checking futures-io v0.3.12 [INFO] [stderr] Compiling anyhow v1.0.38 [INFO] [stderr] Checking unicode-width v0.1.8 [INFO] [stderr] Checking os_str_bytes v2.4.0 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking strsim v0.10.0 [INFO] [stderr] Compiling libloading v0.6.7 [INFO] [stderr] Checking instant v0.1.9 [INFO] [stderr] Checking lock_api v0.4.2 [INFO] [stderr] Compiling thread_local v1.1.2 [INFO] [stderr] Checking futures-task v0.3.12 [INFO] [stderr] Checking textwrap v0.12.1 [INFO] [stderr] Checking futures-channel v0.3.12 [INFO] [stderr] Compiling proc-macro2 v1.0.24 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling crossbeam-utils v0.7.2 [INFO] [stderr] Compiling num-bigint v0.3.1 [INFO] [stderr] Compiling num-rational v0.3.2 [INFO] [stderr] Compiling memoffset v0.5.6 [INFO] [stderr] Compiling num-iter v0.1.42 [INFO] [stderr] Compiling crossbeam-epoch v0.8.2 [INFO] [stderr] Compiling indexmap v1.6.1 [INFO] [stderr] Compiling tokio v0.3.7 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling quote v1.0.8 [INFO] [stderr] Checking parking_lot_core v0.8.2 [INFO] [stderr] Checking hdf5-types v0.7.1 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking crossbeam-queue v0.2.3 [INFO] [stderr] Checking crossbeam-channel v0.4.4 [INFO] [stderr] Checking parking_lot v0.11.1 [INFO] [stderr] Checking crossbeam-deque v0.7.3 [INFO] [stderr] Checking crossbeam v0.7.3 [INFO] [stderr] Checking num-complex v0.3.1 [INFO] [stderr] Compiling regex v1.4.3 [INFO] [stderr] Checking num v0.3.1 [INFO] [stderr] Compiling hdf5-sys v0.7.1 [INFO] [stderr] Checking ndarray-ops v0.1.0 (https://github.com/clemson-cal/ndarray-ops#725bc216) [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.1` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-4a8dfdec9ead82d1/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55a24b00c270 - std::backtrace_rs::backtrace::libunwind::trace::hb4de9797f80b7b8c [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x55a24b00c270 - std::backtrace_rs::backtrace::trace_unsynchronized::h59566d0bd20efff7 [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55a24b00c270 - std::sys_common::backtrace::_print_fmt::hcfa5ce6be50275d4 [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55a24b00c270 - ::fmt::hd8c307a38b9bab04 [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55a24b0283bc - core::fmt::write::h3868db8542c90941 [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/core/src/fmt/mod.rs:1096:17 [INFO] [stderr] 5: 0x55a24b008b12 - std::io::Write::write_fmt::hab90295d5a0f197d [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/io/mod.rs:1568:15 [INFO] [stderr] 6: 0x55a24b00e2f5 - std::sys_common::backtrace::_print::h19224910b8700cf1 [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55a24b00e2f5 - std::sys_common::backtrace::print::h25dedfa68c5fb84a [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55a24b00e2f5 - std::panicking::default_hook::{{closure}}::h12c5765653a72a42 [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x55a24b00de53 - std::panicking::default_hook::he65cee71c4209f0c [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x55a24b00ea91 - std::panicking::rust_panic_with_hook::h01a674d863fe0d8a [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x55a24aeee74e - std::panicking::begin_panic::{{closure}}::ha0c3d188fa3d0bd8 [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/panicking.rs:520:9 [INFO] [stderr] 12: 0x55a24af0e679 - std::sys_common::backtrace::__rust_end_short_backtrace::hb1ea426bfce47468 [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55a24aeee67b - std::panicking::begin_panic::h6fdfbaf195d933a4 [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/panicking.rs:519:12 [INFO] [stderr] 14: 0x55a24ade409b - build_script_build::LibrarySearcher::try_locate_hdf5_library::h8a0826a8cdbafb64 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13 [INFO] [stderr] 15: 0x55a24ade58f5 - build_script_build::main::hb21c9e0d6f288de9 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:647:9 [INFO] [stderr] 16: 0x55a24adf1a5b - core::ops::function::FnOnce::call_once::hb968f5d9ec774a23 [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x55a24adea26e - std::sys_common::backtrace::__rust_begin_short_backtrace::h450195a688d9ae43 [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x55a24adf28b1 - std::rt::lang_start::{{closure}}::h9adcef704ee22780 [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/rt.rs:66:18 [INFO] [stderr] 19: 0x55a24b00eeb7 - core::ops::function::impls:: for &F>::call_once::h2c4fd7d4128112a8 [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x55a24b00eeb7 - std::panicking::try::do_call::h41fb7dbbbe7bece6 [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/panicking.rs:379:40 [INFO] [stderr] 21: 0x55a24b00eeb7 - std::panicking::try::hd38008ccba72bce1 [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/panicking.rs:343:19 [INFO] [stderr] 22: 0x55a24b00eeb7 - std::panic::catch_unwind::h057e765cd60f2d13 [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/panic.rs:431:14 [INFO] [stderr] 23: 0x55a24b00eeb7 - std::rt::lang_start_internal::hdb9d0b9d2cdcda8b [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/rt.rs:51:25 [INFO] [stderr] 24: 0x55a24adf2887 - std::rt::lang_start::h7722a5a7b2170e7b [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/rt.rs:65:5 [INFO] [stderr] 25: 0x55a24ade6f3a - main [INFO] [stderr] 26: 0x7f1c16bd00b3 - __libc_start_main [INFO] [stderr] 27: 0x55a24addf0be - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "5fdd92b954791a02689ab76642eef456f00deec45d75929861e427460e455a7e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5fdd92b954791a02689ab76642eef456f00deec45d75929861e427460e455a7e", kill_on_drop: false }` [INFO] [stdout] 5fdd92b954791a02689ab76642eef456f00deec45d75929861e427460e455a7e