[INFO] cloning repository https://github.com/38/pyd4 [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/38/pyd4" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 15f07e7e103cd4bd5474c7098c2c3d7a72ede2bd [INFO] checking 38/pyd4 against master#36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923 for pr-81863 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4" "/workspace/builds/worker-2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-2/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/38/pyd4 on toolchain 36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/38/pyd4 [INFO] finished tweaking git repo https://github.com/38/pyd4 [INFO] tweaked toml for git repo https://github.com/38/pyd4 written to /workspace/builds/worker-2/source/Cargo.toml [INFO] crate git repo https://github.com/38/pyd4 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:21f1ed92105a0ef9b0d27ad8bdeb7f36f9f01ac17fffe3a3f3dc5241fc25d8f4" "/opt/rustwide/cargo-home/bin/cargo" "+36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] f54691ae3ce75b95f24f1b2cc4282b811b43d050e80650d7b380d45d1fc0d683 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "f54691ae3ce75b95f24f1b2cc4282b811b43d050e80650d7b380d45d1fc0d683", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "f54691ae3ce75b95f24f1b2cc4282b811b43d050e80650d7b380d45d1fc0d683", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f54691ae3ce75b95f24f1b2cc4282b811b43d050e80650d7b380d45d1fc0d683", kill_on_drop: false }` [INFO] [stdout] f54691ae3ce75b95f24f1b2cc4282b811b43d050e80650d7b380d45d1fc0d683 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:21f1ed92105a0ef9b0d27ad8bdeb7f36f9f01ac17fffe3a3f3dc5241fc25d8f4" "/opt/rustwide/cargo-home/bin/cargo" "+36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 8414127600b6d254c66630f3b713640c266bb9beefbff2c1e8beacc0dbed4344 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "8414127600b6d254c66630f3b713640c266bb9beefbff2c1e8beacc0dbed4344", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.77 [INFO] [stderr] Compiling proc-macro2 v1.0.21 [INFO] [stderr] Checking cfg-if v0.1.10 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling syn v1.0.41 [INFO] [stderr] Compiling version_check v0.9.2 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling log v0.4.11 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling maybe-uninit v2.0.0 [INFO] [stderr] Compiling regex-syntax v0.6.18 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling getrandom v0.1.15 [INFO] [stderr] Compiling serde v1.0.116 [INFO] [stderr] Compiling crc32fast v1.2.0 [INFO] [stderr] Compiling proc-macro-hack v0.5.18 [INFO] [stderr] Compiling serde_derive v1.0.116 [INFO] [stderr] Compiling unindent v0.1.6 [INFO] [stderr] Compiling inventory v0.1.9 [INFO] [stderr] Compiling serde_json v1.0.57 [INFO] [stderr] Compiling pyo3 v0.12.1 [INFO] [stderr] Checking itoa v0.4.6 [INFO] [stderr] Compiling clang-sys v1.0.0 [INFO] [stderr] Compiling crossbeam-utils v0.7.2 [INFO] [stderr] Compiling memoffset v0.5.6 [INFO] [stderr] Compiling crossbeam-epoch v0.8.2 [INFO] [stderr] Compiling miniz_oxide v0.4.2 [INFO] [stderr] Compiling rayon v1.4.0 [INFO] [stderr] Checking instant v0.1.7 [INFO] [stderr] Checking lock_api v0.4.1 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling libloading v0.6.3 [INFO] [stderr] Compiling aho-corasick v0.7.13 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Checking crossbeam-channel v0.4.4 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Compiling paste-impl v0.1.18 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking parking_lot_core v0.8.0 [INFO] [stderr] Checking memmap v0.7.0 [INFO] [stderr] Checking flate2 v1.0.17 [INFO] [stderr] Checking crossbeam-deque v0.7.3 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking parking_lot v0.11.0 [INFO] [stderr] Checking rayon-core v1.8.1 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking paste v0.1.18 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Compiling regex v1.3.9 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Checking d4-framefile v0.1.13 [INFO] [stderr] Compiling pyo3-derive-backend v0.12.1 [INFO] [stderr] Compiling indoc-impl v0.3.6 [INFO] [stderr] Compiling inventory-impl v0.1.9 [INFO] [stderr] Compiling ghost v0.1.2 [INFO] [stderr] Compiling ctor v0.1.15 [INFO] [stderr] Compiling pyo3cls v0.12.1 [INFO] [stderr] Checking indoc v0.3.6 [INFO] [stderr] Compiling d4-hts v0.1.13 [INFO] [stderr] error: failed to run custom build command for `d4-hts v0.1.13` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/d4-hts-467e4082ef181ac2/build-script-build` (exit code: 101) [INFO] [stderr] --- stderr [INFO] [stderr] + pushd /opt/rustwide/target/debug/build/d4-hts-9f060d22b62ebad8/out [INFO] [stderr] + HTSLIB_VERSION=1.11 [INFO] [stderr] + rm -rf /opt/rustwide/target/debug/build/d4-hts-9f060d22b62ebad8/out/htslib [INFO] [stderr] + git clone -b 1.11 https://github.com/samtools/htslib.git [INFO] [stderr] Cloning into 'htslib'... [INFO] [stderr] fatal: unable to access 'https://github.com/samtools/htslib.git/': Could not resolve host: github.com [INFO] [stderr] thread 'main' panicked at 'assertion failed: Command::new(\"bash\").args(&[\"build_htslib.sh\",\n &version]).stdout(std::process::Stdio::null()).spawn().expect(\"Unable to build htslib\").wait().unwrap().success()', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.1.13/build.rs:34:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55d020881780 - std::backtrace_rs::backtrace::libunwind::trace::hb4de9797f80b7b8c [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x55d020881780 - std::backtrace_rs::backtrace::trace_unsynchronized::h59566d0bd20efff7 [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55d020881780 - std::sys_common::backtrace::_print_fmt::hcfa5ce6be50275d4 [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55d020881780 - ::fmt::hd8c307a38b9bab04 [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55d0208a456c - core::fmt::write::h3868db8542c90941 [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/core/src/fmt/mod.rs:1096:17 [INFO] [stderr] 5: 0x55d02087da22 - std::io::Write::write_fmt::hab90295d5a0f197d [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/io/mod.rs:1568:15 [INFO] [stderr] 6: 0x55d020883d05 - std::sys_common::backtrace::_print::h19224910b8700cf1 [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55d020883d05 - std::sys_common::backtrace::print::h25dedfa68c5fb84a [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55d020883d05 - std::panicking::default_hook::{{closure}}::h12c5765653a72a42 [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x55d020883863 - std::panicking::default_hook::he65cee71c4209f0c [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x55d0208844a1 - std::panicking::rust_panic_with_hook::h01a674d863fe0d8a [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x55d020883fb7 - std::panicking::begin_panic_handler::{{closure}}::h9b9fecf185178864 [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/panicking.rs:495:13 [INFO] [stderr] 12: 0x55d020881c1c - std::sys_common::backtrace::__rust_end_short_backtrace::h57be46a42dc7f24b [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55d020883f49 - rust_begin_unwind [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/panicking.rs:493:5 [INFO] [stderr] 14: 0x55d0208a2c51 - core::panicking::panic_fmt::h20225113c4a2f8fd [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/core/src/panicking.rs:92:14 [INFO] [stderr] 15: 0x55d0208a2b9d - core::panicking::panic::h35b77276aa4b0c12 [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/core/src/panicking.rs:50:5 [INFO] [stderr] 16: 0x55d0202be9ec - build_script_build::build_own_htslib::hbe7a34a118ce2509 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.1.13/build.rs:34:5 [INFO] [stderr] 17: 0x55d0202beef4 - build_script_build::main::hbcc38b3de9ff7038 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.1.13/build.rs:66:9 [INFO] [stderr] 18: 0x55d0202bfabb - core::ops::function::FnOnce::call_once::h11fcfc8b64574202 [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 19: 0x55d0202bfe4e - std::sys_common::backtrace::__rust_begin_short_backtrace::h83dca719e6f66348 [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 20: 0x55d0202c0741 - std::rt::lang_start::{{closure}}::h3a94224a872fc75f [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/rt.rs:66:18 [INFO] [stderr] 21: 0x55d0208849b7 - core::ops::function::impls:: for &F>::call_once::h2c4fd7d4128112a8 [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 22: 0x55d0208849b7 - std::panicking::try::do_call::h41fb7dbbbe7bece6 [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/panicking.rs:379:40 [INFO] [stderr] 23: 0x55d0208849b7 - std::panicking::try::hd38008ccba72bce1 [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/panicking.rs:343:19 [INFO] [stderr] 24: 0x55d0208849b7 - std::panic::catch_unwind::h057e765cd60f2d13 [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/panic.rs:431:14 [INFO] [stderr] 25: 0x55d0208849b7 - std::rt::lang_start_internal::hdb9d0b9d2cdcda8b [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/rt.rs:51:25 [INFO] [stderr] 26: 0x55d0202c0717 - std::rt::lang_start::h658abf6c95d33f01 [INFO] [stderr] at /rustc/36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923/library/std/src/rt.rs:65:5 [INFO] [stderr] 27: 0x55d0202bf51a - main [INFO] [stderr] 28: 0x7f267086d0b3 - __libc_start_main [INFO] [stderr] 29: 0x55d0202be0be - _start [INFO] [stderr] 30: 0x0 - [INFO] running `Command { std: "docker" "inspect" "8414127600b6d254c66630f3b713640c266bb9beefbff2c1e8beacc0dbed4344", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8414127600b6d254c66630f3b713640c266bb9beefbff2c1e8beacc0dbed4344", kill_on_drop: false }` [INFO] [stdout] 8414127600b6d254c66630f3b713640c266bb9beefbff2c1e8beacc0dbed4344