[INFO] cloning repository https://github.com/10XGenomics/vartrix
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/10XGenomics/vartrix" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Fvartrix", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Fvartrix'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] b253c28f5df0b079ba8c5a9be3fc382a7e43535c
[INFO] checking 10XGenomics/vartrix against master#36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923 for pr-81863
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Fvartrix" "/workspace/builds/worker-2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/10XGenomics/vartrix on toolchain 36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/10XGenomics/vartrix
[INFO] finished tweaking git repo https://github.com/10XGenomics/vartrix
[INFO] tweaked toml for git repo https://github.com/10XGenomics/vartrix written to /workspace/builds/worker-2/source/Cargo.toml
[INFO] crate git repo https://github.com/10XGenomics/vartrix already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] error: the lock file /workspace/builds/worker-2/source/Cargo.lock needs to be updated but --locked was passed to prevent this
[INFO] [stderr] If you want to try to generate the lock file without accessing the network, use the --offline flag.
[INFO] the lockfile is outdated, regenerating it
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:21f1ed92105a0ef9b0d27ad8bdeb7f36f9f01ac17fffe3a3f3dc5241fc25d8f4" "/opt/rustwide/cargo-home/bin/cargo" "+36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 927260dcdd25869035e6cea07153980177ab8b99523b6a627429b36122e92e38
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "927260dcdd25869035e6cea07153980177ab8b99523b6a627429b36122e92e38", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "927260dcdd25869035e6cea07153980177ab8b99523b6a627429b36122e92e38", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "927260dcdd25869035e6cea07153980177ab8b99523b6a627429b36122e92e38", kill_on_drop: false }`
[INFO] [stdout] 927260dcdd25869035e6cea07153980177ab8b99523b6a627429b36122e92e38
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:21f1ed92105a0ef9b0d27ad8bdeb7f36f9f01ac17fffe3a3f3dc5241fc25d8f4" "/opt/rustwide/cargo-home/bin/cargo" "+36ecbc94eb6be90bc38b2d0fdd4bfac3f34d9923" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] bec47d5c1757870b31cc042d69f0a496e5e35dcf6c8d772654ac218eeef886f1
[INFO] running `Command { std: "docker" "start" "-a" "bec47d5c1757870b31cc042d69f0a496e5e35dcf6c8d772654ac218eeef886f1", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling libc v0.2.86
[INFO] [stderr]    Compiling getrandom v0.2.2
[INFO] [stderr]    Compiling proc-macro2 v0.4.30
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]     Checking matches v0.1.8
[INFO] [stderr]    Compiling unicode-xid v0.1.0
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling glob v0.3.0
[INFO] [stderr]     Checking gimli v0.23.0
[INFO] [stderr]     Checking object v0.23.0
[INFO] [stderr]    Compiling failure_derive v0.1.8
[INFO] [stderr]     Checking quick-error v1.2.3
[INFO] [stderr]     Checking rustc-demangle v0.1.18
[INFO] [stderr]     Checking unicode-width v0.1.8
[INFO] [stderr]    Compiling bio v0.32.0
[INFO] [stderr]     Checking remove_dir_all v0.5.3
[INFO] [stderr]     Checking ansi_term v0.11.0
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking strsim v0.8.0
[INFO] [stderr]     Checking triple_accel v0.3.4
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling crossbeam-utils v0.8.1
[INFO] [stderr]    Compiling memoffset v0.6.1
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling rayon v1.5.0
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]     Checking itertools v0.6.5
[INFO] [stderr]     Checking unicode-bidi v0.3.4
[INFO] [stderr]     Checking form_urlencoded v1.0.0
[INFO] [stderr]     Checking textwrap v0.11.0
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking doc-comment v0.3.3
[INFO] [stderr]     Checking log v0.4.14
[INFO] [stderr]     Checking csv-core v0.1.10
[INFO] [stderr]    Compiling syn v1.0.60
[INFO] [stderr]     Checking regex v1.4.3
[INFO] [stderr]     Checking petgraph v0.5.1
[INFO] [stderr]     Checking idna v0.2.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking crossbeam-epoch v0.9.1
[INFO] [stderr]     Checking crossbeam-channel v0.5.0
[INFO] [stderr]    Compiling jobserver v0.1.21
[INFO] [stderr]    Compiling quote v0.6.13
[INFO] [stderr]     Checking getrandom v0.1.16
[INFO] [stderr]     Checking num_cpus v1.13.0
[INFO] [stderr]     Checking time v0.1.43
[INFO] [stderr]     Checking dirs v1.0.5
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking flate2 v1.0.20
[INFO] [stderr]     Checking terminal_size v0.1.16
[INFO] [stderr]    Compiling syn v0.15.44
[INFO] [stderr]    Compiling cc v1.0.66
[INFO] [stderr]     Checking url v2.2.0
[INFO] [stderr]     Checking rand_core v0.6.1
[INFO] [stderr]     Checking uuid v0.8.2
[INFO] [stderr]     Checking num-integer v0.1.44
[INFO] [stderr]     Checking approx v0.3.2
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking ordered-float v1.1.1
[INFO] [stderr]     Checking crossbeam-deque v0.8.0
[INFO] [stderr]     Checking rand_core v0.5.1
[INFO] [stderr]     Checking term v0.5.2
[INFO] [stderr]     Checking os_type v2.2.0
[INFO] [stderr]     Checking rand_chacha v0.3.0
[INFO] [stderr]     Checking chrono v0.4.19
[INFO] [stderr]     Checking rand_chacha v0.2.2
[INFO] [stderr]     Checking rayon-core v1.9.0
[INFO] [stderr]     Checking rand v0.8.3
[INFO] [stderr]     Checking alga v0.9.3
[INFO] [stderr]    Compiling openssl-src v111.13.0+1.1.1i
[INFO] [stderr]     Checking rand v0.7.3
[INFO] [stderr]    Compiling libz-sys v1.1.2
[INFO] [stderr]    Compiling openssl-sys v0.9.60
[INFO] [stderr]    Compiling bzip2-sys v0.1.10+1.0.8
[INFO] [stderr]    Compiling curl-sys v0.4.40+curl-7.75.0
[INFO] [stderr]    Compiling lzma-sys v0.1.17
[INFO] [stderr]    Compiling hts-sys v1.11.1-fix1
[INFO] [stderr]     Checking addr2line v0.14.1
[INFO] [stderr]     Checking simplelog v0.5.3
[INFO] [stderr]     Checking backtrace v0.3.56
[INFO] [stderr]     Checking tempfile v3.2.0
[INFO] [stderr]     Checking statrs v0.12.0
[INFO] [stderr]    Compiling derefable v0.1.0
[INFO] [stderr]     Checking sprs v0.9.3
[INFO] [stderr]    Compiling synstructure v0.12.4
[INFO] [stderr]    Compiling serde_derive v1.0.123
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling strum_macros v0.20.1
[INFO] [stderr]    Compiling enum-map-derive v0.4.6
[INFO] [stderr]    Compiling snafu-derive v0.6.10
[INFO] [stderr]    Compiling thiserror-impl v1.0.23
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling strum_macros v0.18.0
[INFO] [stderr]     Checking enum-map v0.6.4
[INFO] [stderr]     Checking failure v0.1.8
[INFO] [stderr]     Checking bio-types v0.10.0
[INFO] [stderr]     Checking snafu v0.6.10
[INFO] [stderr]     Checking thiserror v1.0.23
[INFO] [stderr]     Checking serde v1.0.123
[INFO] [stderr]     Checking bstr v0.2.15
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking toml v0.5.8
[INFO] [stderr]     Checking multimap v0.8.2
[INFO] [stderr]     Checking clap v2.33.3
[INFO] [stderr]     Checking human-panic v1.0.3
[INFO] [stderr]     Checking csv v1.1.5
[INFO] [stderr]     Checking rust-htslib v0.36.0
[INFO] [stderr]     Checking vartrix v1.1.17 (/opt/rustwide/workdir)
[INFO] [stdout] error[E0061]: this function takes 1 argument but 3 arguments were supplied
[INFO] [stdout]    --> src/main.rs:820:9
[INFO] [stdout]     |
[INFO] [stdout] 820 |     bam.fetch(tid, haps.locus.start, haps.locus.end)?;
[INFO] [stdout]     |         ^^^^^ ---  ----------------  -------------- supplied 3 arguments
[INFO] [stdout]     |         |
[INFO] [stdout]     |         expected 1 argument
[INFO] [stdout]     |
[INFO] [stdout] note: associated function defined here
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.36.0/src/bam/mod.rs:666:12
[INFO] [stdout]     |
[INFO] [stdout] 666 |     pub fn fetch<'a, T: Into<FetchDefinition<'a>>>(&mut self, fetch_definition: T) -> Result<()> {
[INFO] [stdout]     |            ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0061]: this function takes 1 argument but 3 arguments were supplied
[INFO] [stdout]    --> src/main.rs:820:9
[INFO] [stdout]     |
[INFO] [stdout] 820 |     bam.fetch(tid, haps.locus.start, haps.locus.end)?;
[INFO] [stdout]     |         ^^^^^ ---  ----------------  -------------- supplied 3 arguments
[INFO] [stdout]     |         |
[INFO] [stdout]     |         expected 1 argument
[INFO] [stdout]     |
[INFO] [stdout] note: associated function defined here
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.36.0/src/bam/mod.rs:666:12
[INFO] [stdout]     |
[INFO] [stdout] 666 |     pub fn fetch<'a, T: Into<FetchDefinition<'a>>>(&mut self, fetch_definition: T) -> Result<()> {
[INFO] [stdout]     |            ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to previous error
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0061`.
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `vartrix`
[INFO] [stdout] error: aborting due to previous error
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0061`.
[INFO] [stdout] 
[INFO] [stderr] To learn more, run the command again with --verbose.
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: build failed
[INFO] running `Command { std: "docker" "inspect" "bec47d5c1757870b31cc042d69f0a496e5e35dcf6c8d772654ac218eeef886f1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "bec47d5c1757870b31cc042d69f0a496e5e35dcf6c8d772654ac218eeef886f1", kill_on_drop: false }`
[INFO] [stdout] bec47d5c1757870b31cc042d69f0a496e5e35dcf6c8d772654ac218eeef886f1