[INFO] fetching crate diffuse 0.1.1... [INFO] checking diffuse-0.1.1 against master#836c31742687ba4e2f857b5b698e1e9e6b67619c for pr-81789 [INFO] extracting crate diffuse 0.1.1 into /workspace/builds/worker-0/source [INFO] validating manifest of crates.io crate diffuse 0.1.1 on toolchain 836c31742687ba4e2f857b5b698e1e9e6b67619c [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+836c31742687ba4e2f857b5b698e1e9e6b67619c" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate diffuse 0.1.1 [INFO] finished tweaking crates.io crate diffuse 0.1.1 [INFO] tweaked toml for crates.io crate diffuse 0.1.1 written to /workspace/builds/worker-0/source/Cargo.toml [INFO] crate crates.io crate diffuse 0.1.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+836c31742687ba4e2f857b5b698e1e9e6b67619c" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+836c31742687ba4e2f857b5b698e1e9e6b67619c" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] cf9003851148f9b2576b3456d05adace4e6515f6d0426b5305a4e63bc30b8ca2 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "cf9003851148f9b2576b3456d05adace4e6515f6d0426b5305a4e63bc30b8ca2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "cf9003851148f9b2576b3456d05adace4e6515f6d0426b5305a4e63bc30b8ca2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "cf9003851148f9b2576b3456d05adace4e6515f6d0426b5305a4e63bc30b8ca2", kill_on_drop: false }` [INFO] [stdout] cf9003851148f9b2576b3456d05adace4e6515f6d0426b5305a4e63bc30b8ca2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+836c31742687ba4e2f857b5b698e1e9e6b67619c" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 35e1ab9a77028c5e76a394a6fd2bea453b6220025a66ddde2123fc2c9ed5efb2 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "35e1ab9a77028c5e76a394a6fd2bea453b6220025a66ddde2123fc2c9ed5efb2", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling libm v0.2.1 [INFO] [stderr] Compiling syn v1.0.48 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Checking cfg-if v1.0.0 [INFO] [stderr] Compiling const_fn v0.4.3 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Checking either v1.6.1 [INFO] [stderr] Compiling rayon-core v1.9.0 [INFO] [stderr] Compiling regex-syntax v0.6.21 [INFO] [stderr] Compiling ppv-lite86 v0.2.10 [INFO] [stderr] Compiling cc v1.0.62 [INFO] [stderr] Compiling siphasher v0.3.3 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling ucd-trie v0.1.3 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Compiling version_check v0.9.2 [INFO] [stderr] Compiling maplit v1.0.2 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling typenum v1.12.0 [INFO] [stderr] Compiling byteorder v1.3.4 [INFO] [stderr] Compiling ryu v1.0.5 [INFO] [stderr] Compiling netcdf-sys v0.3.3 [INFO] [stderr] Checking rawpointer v0.1.0 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Checking adler32 v1.2.0 [INFO] [stderr] Compiling serde_json v1.0.59 [INFO] [stderr] Checking hashbrown v0.9.1 [INFO] [stderr] Checking bytemuck v1.4.1 [INFO] [stderr] Checking unicode-width v0.1.8 [INFO] [stderr] Compiling paste v1.0.2 [INFO] [stderr] Checking number_prefix v0.3.0 [INFO] [stderr] Checking itoa v0.4.6 [INFO] [stderr] Checking slice-of-array v0.2.1 [INFO] [stderr] Checking hex v0.4.2 [INFO] [stderr] Compiling libloading v0.6.5 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Checking itertools v0.7.11 [INFO] [stderr] Checking itertools v0.8.2 [INFO] [stderr] Checking matrixmultiply v0.2.3 [INFO] [stderr] Compiling phf_shared v0.8.0 [INFO] [stderr] Compiling pest v2.1.3 [INFO] [stderr] Checking miniz_oxide v0.3.7 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling crossbeam-utils v0.8.0 [INFO] [stderr] Compiling memoffset v0.5.6 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling rayon v1.5.0 [INFO] [stderr] Compiling num-rational v0.3.2 [INFO] [stderr] Compiling indexmap v1.6.0 [INFO] [stderr] Checking libc v0.2.80 [INFO] [stderr] Compiling proc-macro2 v1.0.24 [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Checking rgb v0.8.25 [INFO] [stderr] Compiling generic-array v0.14.4 [INFO] [stderr] Checking bitflags v1.2.1 [INFO] [stderr] Checking crc32fast v1.2.1 [INFO] [stderr] Checking phf v0.8.0 [INFO] [stderr] Compiling aho-corasick v0.7.15 [INFO] [stderr] Checking ansi_rgb v0.2.0 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Compiling getrandom v0.1.15 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking terminal_size v0.1.13 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Compiling pest_meta v2.1.3 [INFO] [stderr] Compiling libz-sys v1.1.2 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking colored v2.0.0 [INFO] [stderr] Checking deflate v0.8.6 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking rand_pcg v0.2.1 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking regex v1.4.2 [INFO] [stderr] Checking crossbeam-epoch v0.9.0 [INFO] [stderr] Checking crossbeam-channel v0.5.0 [INFO] [stderr] Checking png v0.16.7 [INFO] [stderr] Checking crossbeam-deque v0.8.0 [INFO] [stderr] Checking approx v0.4.0 [INFO] [stderr] Checking approx v0.3.2 [INFO] [stderr] Checking noisy_float v0.1.13 [INFO] [stderr] Checking rand_distr v0.3.0 [INFO] [stderr] Compiling phf_generator v0.8.0 [INFO] [stderr] Compiling phf_codegen v0.8.0 [INFO] [stderr] Checking console v0.13.0 [INFO] [stderr] Compiling palette v0.5.0 [INFO] [stderr] Checking indicatif v0.15.0 [INFO] [stderr] Compiling hdf5-sys v0.7.0 [INFO] [stderr] Checking ndarray-parallel v0.9.1 [INFO] [stderr] Compiling pest_generator v2.1.3 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-1198107aee20fd2e/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5628bc553170 - std::backtrace_rs::backtrace::libunwind::trace::hec7eaac9435d3512 [INFO] [stderr] at /rustc/836c31742687ba4e2f857b5b698e1e9e6b67619c/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x5628bc553170 - std::backtrace_rs::backtrace::trace_unsynchronized::h42791b8fa12b7daa [INFO] [stderr] at /rustc/836c31742687ba4e2f857b5b698e1e9e6b67619c/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x5628bc553170 - std::sys_common::backtrace::_print_fmt::h3da3ebe04fb665a8 [INFO] [stderr] at /rustc/836c31742687ba4e2f857b5b698e1e9e6b67619c/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x5628bc553170 - ::fmt::he40bcdde3c4491cd [INFO] [stderr] at /rustc/836c31742687ba4e2f857b5b698e1e9e6b67619c/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x5628bc571bbf - core::fmt::write::h2c729149c08098ab [INFO] [stderr] at /rustc/836c31742687ba4e2f857b5b698e1e9e6b67619c/library/core/src/fmt/mod.rs:1094:17 [INFO] [stderr] 5: 0x5628bc550725 - std::io::Write::write_fmt::h28e0f2f58b8d7b7e [INFO] [stderr] at /rustc/836c31742687ba4e2f857b5b698e1e9e6b67619c/library/std/src/io/mod.rs:1580:15 [INFO] [stderr] 6: 0x5628bc5550eb - std::sys_common::backtrace::_print::h7f0223b1e3d898fc [INFO] [stderr] at /rustc/836c31742687ba4e2f857b5b698e1e9e6b67619c/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x5628bc5550eb - std::sys_common::backtrace::print::h58edd634a14c2d4c [INFO] [stderr] at /rustc/836c31742687ba4e2f857b5b698e1e9e6b67619c/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x5628bc5550eb - std::panicking::default_hook::{{closure}}::h71657a7591430164 [INFO] [stderr] at /rustc/836c31742687ba4e2f857b5b698e1e9e6b67619c/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x5628bc554bcd - std::panicking::default_hook::hcdf4eb5db072c85b [INFO] [stderr] at /rustc/836c31742687ba4e2f857b5b698e1e9e6b67619c/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x5628bc55569d - std::panicking::rust_panic_with_hook::hfb91e961ffb5b8e0 [INFO] [stderr] at /rustc/836c31742687ba4e2f857b5b698e1e9e6b67619c/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x5628bc373ff3 - std::panicking::begin_panic::{{closure}}::h4fad0f9ca1c61f97 [INFO] [stderr] at /rustc/836c31742687ba4e2f857b5b698e1e9e6b67619c/library/std/src/panicking.rs:520:9 [INFO] [stderr] 12: 0x5628bc37d3d9 - std::sys_common::backtrace::__rust_end_short_backtrace::ha62540b886c5309f [INFO] [stderr] at /rustc/836c31742687ba4e2f857b5b698e1e9e6b67619c/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x5628bc373f29 - std::panicking::begin_panic::h968f354c1cab84f6 [INFO] [stderr] at /rustc/836c31742687ba4e2f857b5b698e1e9e6b67619c/library/std/src/panicking.rs:519:12 [INFO] [stderr] 14: 0x5628bc34ec89 - build_script_build::LibrarySearcher::try_locate_hdf5_library::h213af3d767f83938 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] 15: 0x5628bc35049c - build_script_build::main::h9dcafbf945a5d15c [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647:9 [INFO] [stderr] 16: 0x5628bc35585b - core::ops::function::FnOnce::call_once::h92e92ab315e28ebd [INFO] [stderr] at /rustc/836c31742687ba4e2f857b5b698e1e9e6b67619c/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x5628bc35c66e - std::sys_common::backtrace::__rust_begin_short_backtrace::h0560a46c5cc1cb65 [INFO] [stderr] at /rustc/836c31742687ba4e2f857b5b698e1e9e6b67619c/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x5628bc359e11 - std::rt::lang_start::{{closure}}::hff31ba0aa2a6e750 [INFO] [stderr] at /rustc/836c31742687ba4e2f857b5b698e1e9e6b67619c/library/std/src/rt.rs:66:18 [INFO] [stderr] 19: 0x5628bc555a9a - core::ops::function::impls:: for &F>::call_once::hd5953dadf0bc8f54 [INFO] [stderr] at /rustc/836c31742687ba4e2f857b5b698e1e9e6b67619c/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x5628bc555a9a - std::panicking::try::do_call::h23b369f1996fb7d4 [INFO] [stderr] at /rustc/836c31742687ba4e2f857b5b698e1e9e6b67619c/library/std/src/panicking.rs:379:40 [INFO] [stderr] 21: 0x5628bc555a9a - std::panicking::try::he017ee9ed6bce192 [INFO] [stderr] at /rustc/836c31742687ba4e2f857b5b698e1e9e6b67619c/library/std/src/panicking.rs:343:19 [INFO] [stderr] 22: 0x5628bc555a9a - std::panic::catch_unwind::hbfb892340a78b30d [INFO] [stderr] at /rustc/836c31742687ba4e2f857b5b698e1e9e6b67619c/library/std/src/panic.rs:431:14 [INFO] [stderr] 23: 0x5628bc555a9a - std::rt::lang_start_internal::hce6e4c0ce56abb51 [INFO] [stderr] at /rustc/836c31742687ba4e2f857b5b698e1e9e6b67619c/library/std/src/rt.rs:51:25 [INFO] [stderr] 24: 0x5628bc359df0 - std::rt::lang_start::hb9197082acd1fb6d [INFO] [stderr] at /rustc/836c31742687ba4e2f857b5b698e1e9e6b67619c/library/std/src/rt.rs:65:5 [INFO] [stderr] 25: 0x5628bc35199c - main [INFO] [stderr] 26: 0x7fb2753560b3 - __libc_start_main [INFO] [stderr] 27: 0x5628bc349c8e - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "35e1ab9a77028c5e76a394a6fd2bea453b6220025a66ddde2123fc2c9ed5efb2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "35e1ab9a77028c5e76a394a6fd2bea453b6220025a66ddde2123fc2c9ed5efb2", kill_on_drop: false }` [INFO] [stdout] 35e1ab9a77028c5e76a394a6fd2bea453b6220025a66ddde2123fc2c9ed5efb2