[INFO] fetching crate syntaxdot-transformers 0.2.1... [INFO] checking syntaxdot-transformers-0.2.1 against master#9503ea19edbf01b9435e80e17d60ce1b88390116 for pr-81782 [INFO] extracting crate syntaxdot-transformers 0.2.1 into /workspace/builds/worker-8/source [INFO] validating manifest of crates.io crate syntaxdot-transformers 0.2.1 on toolchain 9503ea19edbf01b9435e80e17d60ce1b88390116 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+9503ea19edbf01b9435e80e17d60ce1b88390116" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate syntaxdot-transformers 0.2.1 [INFO] finished tweaking crates.io crate syntaxdot-transformers 0.2.1 [INFO] tweaked toml for crates.io crate syntaxdot-transformers 0.2.1 written to /workspace/builds/worker-8/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+9503ea19edbf01b9435e80e17d60ce1b88390116" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+9503ea19edbf01b9435e80e17d60ce1b88390116" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:f2f6bcd4b43ebee4e173f653a26493129bdb64017c85f916b780ca7fbdbaa79d" "/opt/rustwide/cargo-home/bin/cargo" "+9503ea19edbf01b9435e80e17d60ce1b88390116" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 8731bc08f7f340336c89e2ce5044deb677ab3dee43f2132c811a52a012a33774 [INFO] running `Command { std: "docker" "start" "-a" "8731bc08f7f340336c89e2ce5044deb677ab3dee43f2132c811a52a012a33774", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "8731bc08f7f340336c89e2ce5044deb677ab3dee43f2132c811a52a012a33774", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8731bc08f7f340336c89e2ce5044deb677ab3dee43f2132c811a52a012a33774", kill_on_drop: false }` [INFO] [stdout] 8731bc08f7f340336c89e2ce5044deb677ab3dee43f2132c811a52a012a33774 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:f2f6bcd4b43ebee4e173f653a26493129bdb64017c85f916b780ca7fbdbaa79d" "/opt/rustwide/cargo-home/bin/cargo" "+9503ea19edbf01b9435e80e17d60ce1b88390116" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 089df9699c3389d08b8c0ca8128ed3eda90602e267bcc0f3fdb67a327607b2a8 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "089df9699c3389d08b8c0ca8128ed3eda90602e267bcc0f3fdb67a327607b2a8", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling crc32fast v1.2.1 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling anyhow v1.0.38 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Checking adler32 v1.2.0 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Checking byteorder v1.4.2 [INFO] [stderr] Compiling serde_derive v1.0.123 [INFO] [stderr] Compiling ndarray v0.14.0 [INFO] [stderr] Compiling hdf5 v0.7.1 [INFO] [stderr] Checking either v1.6.1 [INFO] [stderr] Checking ascii v1.0.0 [INFO] [stderr] Compiling serde v1.0.123 [INFO] [stderr] Compiling bzip2-sys v0.1.10+1.0.8 [INFO] [stderr] Compiling libz-sys v1.1.2 [INFO] [stderr] Compiling curl-sys v0.4.40+curl-7.75.0 [INFO] [stderr] Compiling libloading v0.6.7 [INFO] [stderr] Compiling cmake v0.1.45 [INFO] [stderr] Checking instant v0.1.9 [INFO] [stderr] Checking matrixmultiply v0.2.4 [INFO] [stderr] Checking lock_api v0.4.2 [INFO] [stderr] Checking miniz_oxide v0.3.7 [INFO] [stderr] Compiling libc v0.2.86 [INFO] [stderr] Checking itertools v0.9.0 [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Checking getrandom v0.1.16 [INFO] [stderr] Checking time v0.1.44 [INFO] [stderr] Checking parking_lot_core v0.8.3 [INFO] [stderr] Checking hdf5-types v0.7.1 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Compiling thiserror-impl v1.0.24 [INFO] [stderr] Compiling hdf5-derive v0.7.1 [INFO] [stderr] Checking parking_lot v0.11.1 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling openssl-sys v0.9.60 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling aho-corasick v0.7.15 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking flate2 v1.0.14 [INFO] [stderr] Compiling socket2 v0.3.19 [INFO] [stderr] Compiling bzip2 v0.3.3 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Compiling regex v1.4.3 [INFO] [stderr] Checking approx v0.3.2 [INFO] [stderr] Checking num-complex v0.3.1 [INFO] [stderr] Compiling thiserror v1.0.24 [INFO] [stderr] Compiling zip v0.5.10 [INFO] [stderr] Compiling hdf5-sys v0.7.1 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.1` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-f53f030a805f9664/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x56478d095aa0 - std::backtrace_rs::backtrace::libunwind::trace::hb4de9797f80b7b8c [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x56478d095aa0 - std::backtrace_rs::backtrace::trace_unsynchronized::h59566d0bd20efff7 [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x56478d095aa0 - std::sys_common::backtrace::_print_fmt::hcfa5ce6be50275d4 [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x56478d095aa0 - ::fmt::hd8c307a38b9bab04 [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x56478d0b21ec - core::fmt::write::h3868db8542c90941 [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/core/src/fmt/mod.rs:1096:17 [INFO] [stderr] 5: 0x56478d092342 - std::io::Write::write_fmt::hab90295d5a0f197d [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/io/mod.rs:1568:15 [INFO] [stderr] 6: 0x56478d097c05 - std::sys_common::backtrace::_print::h19224910b8700cf1 [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x56478d097c05 - std::sys_common::backtrace::print::h25dedfa68c5fb84a [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x56478d097c05 - std::panicking::default_hook::{{closure}}::h12c5765653a72a42 [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x56478d0976b3 - std::panicking::default_hook::he65cee71c4209f0c [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x56478d0983a1 - std::panicking::rust_panic_with_hook::h01a674d863fe0d8a [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x56478cfeca3e - std::panicking::begin_panic::{{closure}}::h626ce4314711afc2 [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/panicking.rs:520:9 [INFO] [stderr] 12: 0x56478cf83269 - std::sys_common::backtrace::__rust_end_short_backtrace::hd3aaaf18ed67d54f [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x56478cfec96b - std::panicking::begin_panic::h9bd2929c46891d18 [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/panicking.rs:519:12 [INFO] [stderr] 14: 0x56478ce700fb - build_script_build::LibrarySearcher::try_locate_hdf5_library::h1858f595c03917a5 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13 [INFO] [stderr] 15: 0x56478ce71955 - build_script_build::main::hcdd78c47a123630e [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:647:9 [INFO] [stderr] 16: 0x56478ce7d89b - core::ops::function::FnOnce::call_once::hdb2a3c5c516bbed8 [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x56478ce758ce - std::sys_common::backtrace::__rust_begin_short_backtrace::hd7a8080c20313c3a [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x56478ce7d181 - std::rt::lang_start::{{closure}}::habbe7f4c8670e563 [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/rt.rs:66:18 [INFO] [stderr] 19: 0x56478d0987c7 - core::ops::function::impls:: for &F>::call_once::h2c4fd7d4128112a8 [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x56478d0987c7 - std::panicking::try::do_call::h41fb7dbbbe7bece6 [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/panicking.rs:379:40 [INFO] [stderr] 21: 0x56478d0987c7 - std::panicking::try::hd38008ccba72bce1 [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/panicking.rs:343:19 [INFO] [stderr] 22: 0x56478d0987c7 - std::panic::catch_unwind::h057e765cd60f2d13 [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/panic.rs:431:14 [INFO] [stderr] 23: 0x56478d0987c7 - std::rt::lang_start_internal::hdb9d0b9d2cdcda8b [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/rt.rs:51:25 [INFO] [stderr] 24: 0x56478ce7d157 - std::rt::lang_start::h6ad26b718472cd3f [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/rt.rs:65:5 [INFO] [stderr] 25: 0x56478ce72f6a - main [INFO] [stderr] 26: 0x7fad796c40b3 - __libc_start_main [INFO] [stderr] 27: 0x56478ce6b0be - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "089df9699c3389d08b8c0ca8128ed3eda90602e267bcc0f3fdb67a327607b2a8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "089df9699c3389d08b8c0ca8128ed3eda90602e267bcc0f3fdb67a327607b2a8", kill_on_drop: false }` [INFO] [stdout] 089df9699c3389d08b8c0ca8128ed3eda90602e267bcc0f3fdb67a327607b2a8