[INFO] fetching crate mwa_hyperbeam 0.3.2... [INFO] checking mwa_hyperbeam-0.3.2 against master#9503ea19edbf01b9435e80e17d60ce1b88390116 for pr-81782 [INFO] extracting crate mwa_hyperbeam 0.3.2 into /workspace/builds/worker-5/source [INFO] validating manifest of crates.io crate mwa_hyperbeam 0.3.2 on toolchain 9503ea19edbf01b9435e80e17d60ce1b88390116 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+9503ea19edbf01b9435e80e17d60ce1b88390116" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate mwa_hyperbeam 0.3.2 [INFO] finished tweaking crates.io crate mwa_hyperbeam 0.3.2 [INFO] tweaked toml for crates.io crate mwa_hyperbeam 0.3.2 written to /workspace/builds/worker-5/source/Cargo.toml [INFO] crate crates.io crate mwa_hyperbeam 0.3.2 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+9503ea19edbf01b9435e80e17d60ce1b88390116" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:21f1ed92105a0ef9b0d27ad8bdeb7f36f9f01ac17fffe3a3f3dc5241fc25d8f4" "/opt/rustwide/cargo-home/bin/cargo" "+9503ea19edbf01b9435e80e17d60ce1b88390116" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] c7d030d4c8d4b22eabf7f52663344c16812a5297bf195abcd1f4a985cca914b5 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "c7d030d4c8d4b22eabf7f52663344c16812a5297bf195abcd1f4a985cca914b5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "c7d030d4c8d4b22eabf7f52663344c16812a5297bf195abcd1f4a985cca914b5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c7d030d4c8d4b22eabf7f52663344c16812a5297bf195abcd1f4a985cca914b5", kill_on_drop: false }` [INFO] [stdout] c7d030d4c8d4b22eabf7f52663344c16812a5297bf195abcd1f4a985cca914b5 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:21f1ed92105a0ef9b0d27ad8bdeb7f36f9f01ac17fffe3a3f3dc5241fc25d8f4" "/opt/rustwide/cargo-home/bin/cargo" "+9503ea19edbf01b9435e80e17d60ce1b88390116" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] f61dc0b07eda82d4b3a12b9b5820bd93a96a11dbd6949c18ea8794db7d0f4dda [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "f61dc0b07eda82d4b3a12b9b5820bd93a96a11dbd6949c18ea8794db7d0f4dda", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.24 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling libc v0.2.86 [INFO] [stderr] Compiling syn v1.0.60 [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling serde_derive v1.0.123 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Compiling ryu v1.0.5 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling version_check v0.9.2 [INFO] [stderr] Compiling regex-syntax v0.6.22 [INFO] [stderr] Compiling unicode-segmentation v1.7.1 [INFO] [stderr] Compiling ppv-lite86 v0.2.10 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Checking smallvec v1.6.1 [INFO] [stderr] Compiling remove_dir_all v0.5.3 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling hashbrown v0.9.1 [INFO] [stderr] Compiling itoa v0.4.7 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling cbindgen v0.17.0 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Checking byteorder v1.4.2 [INFO] [stderr] Checking once_cell v1.5.2 [INFO] [stderr] Compiling anyhow v1.0.38 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling crossbeam-utils v0.8.1 [INFO] [stderr] Compiling indexmap v1.6.1 [INFO] [stderr] Compiling num-bigint v0.3.1 [INFO] [stderr] Compiling num-iter v0.1.42 [INFO] [stderr] Compiling num-rational v0.3.2 [INFO] [stderr] Checking lock_api v0.4.2 [INFO] [stderr] Compiling libloading v0.6.7 [INFO] [stderr] Checking itertools v0.9.0 [INFO] [stderr] Checking itertools v0.10.0 [INFO] [stderr] Checking instant v0.1.9 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Checking matrixmultiply v0.2.4 [INFO] [stderr] Compiling heck v0.3.2 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Checking thread_local v1.1.3 [INFO] [stderr] Checking regex-automata v0.1.9 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Checking aho-corasick v0.7.15 [INFO] [stderr] Checking csv-core v0.1.10 [INFO] [stderr] Checking crossbeam-epoch v0.9.1 [INFO] [stderr] Checking crossbeam-channel v0.5.0 [INFO] [stderr] Compiling quote v1.0.8 [INFO] [stderr] Checking criterion-plot v0.4.3 [INFO] [stderr] Checking num-complex v0.3.1 [INFO] [stderr] Checking plotters v0.3.0 [INFO] [stderr] Checking approx v0.4.0 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking parking_lot_core v0.8.2 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking hdf5-types v0.7.1 [INFO] [stderr] Checking crossbeam-deque v0.8.0 [INFO] [stderr] Compiling getrandom v0.2.2 [INFO] [stderr] Checking dashmap v4.0.2 [INFO] [stderr] Checking clap v2.33.3 [INFO] [stderr] Checking parking_lot v0.11.1 [INFO] [stderr] Compiling rand_core v0.6.1 [INFO] [stderr] Checking rayon-core v1.9.0 [INFO] [stderr] Compiling rand_chacha v0.3.0 [INFO] [stderr] Compiling regex v1.4.3 [INFO] [stderr] Checking ndarray v0.14.0 [INFO] [stderr] Compiling rand v0.8.3 [INFO] [stderr] Checking rayon v1.5.0 [INFO] [stderr] Compiling tempfile v3.2.0 [INFO] [stderr] Checking num v0.3.1 [INFO] [stderr] Compiling hdf5-sys v0.7.1 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.1` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-ca848e462be9750a/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55e5bbe20b40 - std::backtrace_rs::backtrace::libunwind::trace::hb4de9797f80b7b8c [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x55e5bbe20b40 - std::backtrace_rs::backtrace::trace_unsynchronized::h59566d0bd20efff7 [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55e5bbe20b40 - std::sys_common::backtrace::_print_fmt::hcfa5ce6be50275d4 [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55e5bbe20b40 - ::fmt::hd8c307a38b9bab04 [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55e5bbe3d28c - core::fmt::write::h3868db8542c90941 [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/core/src/fmt/mod.rs:1096:17 [INFO] [stderr] 5: 0x55e5bbe1d3e2 - std::io::Write::write_fmt::hab90295d5a0f197d [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/io/mod.rs:1568:15 [INFO] [stderr] 6: 0x55e5bbe22ca5 - std::sys_common::backtrace::_print::h19224910b8700cf1 [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55e5bbe22ca5 - std::sys_common::backtrace::print::h25dedfa68c5fb84a [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55e5bbe22ca5 - std::panicking::default_hook::{{closure}}::h12c5765653a72a42 [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x55e5bbe22753 - std::panicking::default_hook::he65cee71c4209f0c [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x55e5bbe23441 - std::panicking::rust_panic_with_hook::h01a674d863fe0d8a [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x55e5bbd77ade - std::panicking::begin_panic::{{closure}}::h626ce4314711afc2 [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/panicking.rs:520:9 [INFO] [stderr] 12: 0x55e5bbd0e309 - std::sys_common::backtrace::__rust_end_short_backtrace::hd3aaaf18ed67d54f [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55e5bbd77a0b - std::panicking::begin_panic::h9bd2929c46891d18 [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/panicking.rs:519:12 [INFO] [stderr] 14: 0x55e5bbbfb0fb - build_script_build::LibrarySearcher::try_locate_hdf5_library::he0502d7eb023e9bf [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13 [INFO] [stderr] 15: 0x55e5bbbfc955 - build_script_build::main::h1937e8e361a2d814 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:647:9 [INFO] [stderr] 16: 0x55e5bbc0886b - core::ops::function::FnOnce::call_once::h73f970a0ef62f89a [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x55e5bbc008ce - std::sys_common::backtrace::__rust_begin_short_backtrace::h47dde88acf303d1c [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x55e5bbc08181 - std::rt::lang_start::{{closure}}::h4df46002ec229011 [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/rt.rs:66:18 [INFO] [stderr] 19: 0x55e5bbe23867 - core::ops::function::impls:: for &F>::call_once::h2c4fd7d4128112a8 [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x55e5bbe23867 - std::panicking::try::do_call::h41fb7dbbbe7bece6 [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/panicking.rs:379:40 [INFO] [stderr] 21: 0x55e5bbe23867 - std::panicking::try::hd38008ccba72bce1 [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/panicking.rs:343:19 [INFO] [stderr] 22: 0x55e5bbe23867 - std::panic::catch_unwind::h057e765cd60f2d13 [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/panic.rs:431:14 [INFO] [stderr] 23: 0x55e5bbe23867 - std::rt::lang_start_internal::hdb9d0b9d2cdcda8b [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/rt.rs:51:25 [INFO] [stderr] 24: 0x55e5bbc08157 - std::rt::lang_start::hdcfbd2d3e67182aa [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/rt.rs:65:5 [INFO] [stderr] 25: 0x55e5bbbfdf6a - main [INFO] [stderr] 26: 0x7fe509cd20b3 - __libc_start_main [INFO] [stderr] 27: 0x55e5bbbf60be - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "f61dc0b07eda82d4b3a12b9b5820bd93a96a11dbd6949c18ea8794db7d0f4dda", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f61dc0b07eda82d4b3a12b9b5820bd93a96a11dbd6949c18ea8794db7d0f4dda", kill_on_drop: false }` [INFO] [stdout] f61dc0b07eda82d4b3a12b9b5820bd93a96a11dbd6949c18ea8794db7d0f4dda