[INFO] cloning repository https://github.com/clemson-cal/app-sedov [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/clemson-cal/app-sedov" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclemson-cal%2Fapp-sedov", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclemson-cal%2Fapp-sedov'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 9161d18035ebbc4241380e562386555136849267 [INFO] checking clemson-cal/app-sedov against master#9503ea19edbf01b9435e80e17d60ce1b88390116 for pr-81782 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclemson-cal%2Fapp-sedov" "/workspace/builds/worker-4/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-4/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/clemson-cal/app-sedov on toolchain 9503ea19edbf01b9435e80e17d60ce1b88390116 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+9503ea19edbf01b9435e80e17d60ce1b88390116" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/clemson-cal/app-sedov [INFO] finished tweaking git repo https://github.com/clemson-cal/app-sedov [INFO] tweaked toml for git repo https://github.com/clemson-cal/app-sedov written to /workspace/builds/worker-4/source/Cargo.toml [INFO] crate git repo https://github.com/clemson-cal/app-sedov already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+9503ea19edbf01b9435e80e17d60ce1b88390116" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:f2f6bcd4b43ebee4e173f653a26493129bdb64017c85f916b780ca7fbdbaa79d" "/opt/rustwide/cargo-home/bin/cargo" "+9503ea19edbf01b9435e80e17d60ce1b88390116" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] b7028b99119bdb32781594c5ac824d4528fa7df61b30708f6f5e9d159da6d2d3 [INFO] running `Command { std: "docker" "start" "-a" "b7028b99119bdb32781594c5ac824d4528fa7df61b30708f6f5e9d159da6d2d3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "b7028b99119bdb32781594c5ac824d4528fa7df61b30708f6f5e9d159da6d2d3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b7028b99119bdb32781594c5ac824d4528fa7df61b30708f6f5e9d159da6d2d3", kill_on_drop: false }` [INFO] [stdout] b7028b99119bdb32781594c5ac824d4528fa7df61b30708f6f5e9d159da6d2d3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:f2f6bcd4b43ebee4e173f653a26493129bdb64017c85f916b780ca7fbdbaa79d" "/opt/rustwide/cargo-home/bin/cargo" "+9503ea19edbf01b9435e80e17d60ce1b88390116" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 5557fb3ab5c202af4eade319cf0b6f608d8f97213e142de3d359919f1709a0cb [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "5557fb3ab5c202af4eade319cf0b6f608d8f97213e142de3d359919f1709a0cb", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.79 [INFO] [stderr] Compiling syn v1.0.45 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling regex-syntax v0.6.20 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Checking smallvec v1.4.2 [INFO] [stderr] Compiling hdf5 v0.7.0 [INFO] [stderr] Checking ascii v1.0.0 [INFO] [stderr] Checking os_str_bytes v2.3.2 [INFO] [stderr] Checking glob v0.3.0 [INFO] [stderr] Checking hydro-euler v0.1.0 (https://github.com/clemson-cal/hydro-euler#13f16f2d) [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Compiling num-integer v0.1.43 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling num-bigint v0.3.0 [INFO] [stderr] Compiling num-iter v0.1.41 [INFO] [stderr] Compiling num-rational v0.3.0 [INFO] [stderr] Compiling indexmap v1.6.0 [INFO] [stderr] Checking lock_api v0.3.4 [INFO] [stderr] Compiling libloading v0.6.4 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Compiling aho-corasick v0.7.14 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Checking parking_lot_core v0.7.2 [INFO] [stderr] Checking hdf5-types v0.7.0 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking parking_lot v0.10.2 [INFO] [stderr] Checking num-complex v0.3.0 [INFO] [stderr] Compiling regex v1.4.1 [INFO] [stderr] Checking num v0.3.0 [INFO] [stderr] Checking godunov-core v0.1.0 (https://github.com/clemson-cal/godunov-core#e3ddfe50) [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling hdf5-sys v0.7.0 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-7297923d75166c2c/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x555f3dc95030 - std::backtrace_rs::backtrace::libunwind::trace::hb4de9797f80b7b8c [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x555f3dc95030 - std::backtrace_rs::backtrace::trace_unsynchronized::h59566d0bd20efff7 [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x555f3dc95030 - std::sys_common::backtrace::_print_fmt::hcfa5ce6be50275d4 [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x555f3dc95030 - ::fmt::hd8c307a38b9bab04 [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x555f3dcb175c - core::fmt::write::h3868db8542c90941 [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/core/src/fmt/mod.rs:1096:17 [INFO] [stderr] 5: 0x555f3dc918d2 - std::io::Write::write_fmt::hab90295d5a0f197d [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/io/mod.rs:1568:15 [INFO] [stderr] 6: 0x555f3dc97195 - std::sys_common::backtrace::_print::h19224910b8700cf1 [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x555f3dc97195 - std::sys_common::backtrace::print::h25dedfa68c5fb84a [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x555f3dc97195 - std::panicking::default_hook::{{closure}}::h12c5765653a72a42 [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x555f3dc96c43 - std::panicking::default_hook::he65cee71c4209f0c [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x555f3dc97931 - std::panicking::rust_panic_with_hook::h01a674d863fe0d8a [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x555f3dbec0ee - std::panicking::begin_panic::{{closure}}::h1ce3c6ac28418768 [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/panicking.rs:520:9 [INFO] [stderr] 12: 0x555f3db846e9 - std::sys_common::backtrace::__rust_end_short_backtrace::h71c28845c2b4a3ae [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x555f3dbec01b - std::panicking::begin_panic::h511318067d21cd82 [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/panicking.rs:519:12 [INFO] [stderr] 14: 0x555f3da730db - build_script_build::LibrarySearcher::try_locate_hdf5_library::h4c11bf1a0244745a [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] 15: 0x555f3da74935 - build_script_build::main::h282e5d327f32927a [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647:9 [INFO] [stderr] 16: 0x555f3da7f3bb - core::ops::function::FnOnce::call_once::hf3b0b79f9e5f3afb [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x555f3da78c2e - std::sys_common::backtrace::__rust_begin_short_backtrace::hd15198bfc6904d49 [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x555f3da81bc1 - std::rt::lang_start::{{closure}}::h18ebd840fe0a1d37 [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/rt.rs:66:18 [INFO] [stderr] 19: 0x555f3dc97d57 - core::ops::function::impls:: for &F>::call_once::h2c4fd7d4128112a8 [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x555f3dc97d57 - std::panicking::try::do_call::h41fb7dbbbe7bece6 [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/panicking.rs:379:40 [INFO] [stderr] 21: 0x555f3dc97d57 - std::panicking::try::hd38008ccba72bce1 [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/panicking.rs:343:19 [INFO] [stderr] 22: 0x555f3dc97d57 - std::panic::catch_unwind::h057e765cd60f2d13 [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/panic.rs:431:14 [INFO] [stderr] 23: 0x555f3dc97d57 - std::rt::lang_start_internal::hdb9d0b9d2cdcda8b [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/rt.rs:51:25 [INFO] [stderr] 24: 0x555f3da81b97 - std::rt::lang_start::hbfd78415bddd3212 [INFO] [stderr] at /rustc/9503ea19edbf01b9435e80e17d60ce1b88390116/library/std/src/rt.rs:65:5 [INFO] [stderr] 25: 0x555f3da75f4a - main [INFO] [stderr] 26: 0x7f35077c60b3 - __libc_start_main [INFO] [stderr] 27: 0x555f3da6e0be - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "5557fb3ab5c202af4eade319cf0b6f608d8f97213e142de3d359919f1709a0cb", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5557fb3ab5c202af4eade319cf0b6f608d8f97213e142de3d359919f1709a0cb", kill_on_drop: false }` [INFO] [stdout] 5557fb3ab5c202af4eade319cf0b6f608d8f97213e142de3d359919f1709a0cb