[INFO] fetching crate openmm-sys 7.4.1... [INFO] checking openmm-sys-7.4.1 against try#3d9fdbff4f377de96b3a51174e7a64086bee9a5c for pr-81477 [INFO] extracting crate openmm-sys 7.4.1 into /workspace/builds/worker-4/source [INFO] validating manifest of crates.io crate openmm-sys 7.4.1 on toolchain 3d9fdbff4f377de96b3a51174e7a64086bee9a5c [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+3d9fdbff4f377de96b3a51174e7a64086bee9a5c" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate openmm-sys 7.4.1 [INFO] finished tweaking crates.io crate openmm-sys 7.4.1 [INFO] tweaked toml for crates.io crate openmm-sys 7.4.1 written to /workspace/builds/worker-4/source/Cargo.toml [INFO] crate crates.io crate openmm-sys 7.4.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+3d9fdbff4f377de96b3a51174e7a64086bee9a5c" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:ea7d7bff36b2ba8ce4de8bba1d2dea90376bc481f1a945a913994a8c492e40c1" "/opt/rustwide/cargo-home/bin/cargo" "+3d9fdbff4f377de96b3a51174e7a64086bee9a5c" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] aa8c70a38c04466c2b1263ff6ac91681307b6ac9b01c451036ce7ccc7a7bdb2d [INFO] running `Command { std: "docker" "start" "-a" "aa8c70a38c04466c2b1263ff6ac91681307b6ac9b01c451036ce7ccc7a7bdb2d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "aa8c70a38c04466c2b1263ff6ac91681307b6ac9b01c451036ce7ccc7a7bdb2d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "aa8c70a38c04466c2b1263ff6ac91681307b6ac9b01c451036ce7ccc7a7bdb2d", kill_on_drop: false }` [INFO] [stdout] aa8c70a38c04466c2b1263ff6ac91681307b6ac9b01c451036ce7ccc7a7bdb2d [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:ea7d7bff36b2ba8ce4de8bba1d2dea90376bc481f1a945a913994a8c492e40c1" "/opt/rustwide/cargo-home/bin/cargo" "+3d9fdbff4f377de96b3a51174e7a64086bee9a5c" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 196bd033d8594377a3605f3649483d38260d48c2cfedbcab2304ecc79b274606 [INFO] running `Command { std: "docker" "start" "-a" "196bd033d8594377a3605f3649483d38260d48c2cfedbcab2304ecc79b274606", kill_on_drop: false }` [INFO] [stderr] Compiling cc v1.0.59 [INFO] [stderr] Compiling cmake v0.1.44 [INFO] [stderr] Compiling openmm-sys v7.4.1 (/opt/rustwide/workdir) [INFO] [stderr] The following warnings were emitted during compilation: [INFO] [stderr] [INFO] [stderr] warning: [OpenMM-sys] Dynamically linking against the OpenMM library. [INFO] [stderr] [INFO] [stderr] error: failed to run custom build command for `openmm-sys v7.4.1 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/openmm-sys-154fc7c416496df4/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:warning=[OpenMM-sys] Dynamically linking against the OpenMM library. [INFO] [stderr] running: "cmake" "/opt/rustwide/workdir/openmm" "-DOPENMM_BUILD_PYTHON_WRAPPERS=OFF" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/openmm-sys-cfbc92c69bc4b4b7/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Release" [INFO] [stderr] -- Found PythonInterp: /usr/bin/python (found version "2.7.18") [INFO] [stderr] -- The C compiler identification is GNU 9.3.0 [INFO] [stderr] -- The CXX compiler identification is GNU 9.3.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/rustwide/target/debug/build/openmm-sys-cfbc92c69bc4b4b7/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] fatal: not a git repository (or any parent up to mount point /opt/rustwide) [INFO] [stderr] Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). [INFO] [stderr] CMake Deprecation Warning at CMakeLists.txt:25 (CMAKE_POLICY): [INFO] [stderr] The OLD behavior for policy CMP0042 will be removed from a future version [INFO] [stderr] of CMake. [INFO] [stderr] [INFO] [stderr] The cmake-policies(7) manual explains that the OLD behaviors of all [INFO] [stderr] policies are deprecated and that a policy should be set to OLD only under [INFO] [stderr] specific short-term circumstances. Projects should be ported to the NEW [INFO] [stderr] behavior and not rely on setting a policy to OLD. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Error at /usr/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:146 (message): [INFO] [stderr] Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) [INFO] [stderr] Call Stack (most recent call first): [INFO] [stderr] /usr/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:393 (_FPHSA_FAILURE_MESSAGE) [INFO] [stderr] /usr/share/cmake-3.16/Modules/FindDoxygen.cmake:633 (find_package_handle_standard_args) [INFO] [stderr] wrappers/CMakeLists.txt:1 (find_package) [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit status: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55fa80990a20 - std::backtrace_rs::backtrace::libunwind::trace::h4e80f45db05e9df0 [INFO] [stderr] at /rustc/3d9fdbff4f377de96b3a51174e7a64086bee9a5c/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x55fa80990a20 - std::backtrace_rs::backtrace::trace_unsynchronized::h9db62a3d3587f6c3 [INFO] [stderr] at /rustc/3d9fdbff4f377de96b3a51174e7a64086bee9a5c/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55fa80990a20 - std::sys_common::backtrace::_print_fmt::h2fafbe52c9090591 [INFO] [stderr] at /rustc/3d9fdbff4f377de96b3a51174e7a64086bee9a5c/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55fa80990a20 - ::fmt::h7d41ae04358c516d [INFO] [stderr] at /rustc/3d9fdbff4f377de96b3a51174e7a64086bee9a5c/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55fa809b0d6c - core::fmt::write::h968e6400cbc51d6a [INFO] [stderr] at /rustc/3d9fdbff4f377de96b3a51174e7a64086bee9a5c/library/core/src/fmt/mod.rs:1115:17 [INFO] [stderr] 5: 0x55fa8098d935 - std::io::Write::write_fmt::h2eaa97c6f8c9e829 [INFO] [stderr] at /rustc/3d9fdbff4f377de96b3a51174e7a64086bee9a5c/library/std/src/io/mod.rs:1642:15 [INFO] [stderr] 6: 0x55fa8099308b - std::sys_common::backtrace::_print::h601a6bc581f240d5 [INFO] [stderr] at /rustc/3d9fdbff4f377de96b3a51174e7a64086bee9a5c/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55fa8099308b - std::sys_common::backtrace::print::h8b96e15ba64b8e64 [INFO] [stderr] at /rustc/3d9fdbff4f377de96b3a51174e7a64086bee9a5c/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55fa8099308b - std::panicking::default_hook::{{closure}}::h94fa9d2f08c20620 [INFO] [stderr] at /rustc/3d9fdbff4f377de96b3a51174e7a64086bee9a5c/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x55fa80992b61 - std::panicking::default_hook::h6d463f5a2e9d9986 [INFO] [stderr] at /rustc/3d9fdbff4f377de96b3a51174e7a64086bee9a5c/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x55fa80993754 - std::panicking::rust_panic_with_hook::h1e953652a338573e [INFO] [stderr] at /rustc/3d9fdbff4f377de96b3a51174e7a64086bee9a5c/library/std/src/panicking.rs:622:17 [INFO] [stderr] 11: 0x55fa80993237 - std::panicking::begin_panic_handler::{{closure}}::h78bf2fec525c238a [INFO] [stderr] at /rustc/3d9fdbff4f377de96b3a51174e7a64086bee9a5c/library/std/src/panicking.rs:519:13 [INFO] [stderr] 12: 0x55fa80990f1c - std::sys_common::backtrace::__rust_end_short_backtrace::h651eb6282e4ea6b2 [INFO] [stderr] at /rustc/3d9fdbff4f377de96b3a51174e7a64086bee9a5c/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55fa80993199 - rust_begin_unwind [INFO] [stderr] at /rustc/3d9fdbff4f377de96b3a51174e7a64086bee9a5c/library/std/src/panicking.rs:515:5 [INFO] [stderr] 14: 0x55fa80920c3b - std::panicking::begin_panic_fmt::hce1b46bb3d49d05a [INFO] [stderr] at /rustc/3d9fdbff4f377de96b3a51174e7a64086bee9a5c/library/std/src/panicking.rs:457:5 [INFO] [stderr] 15: 0x55fa8092f91c - cmake::fail::h832376e6ec200ea9 [INFO] [stderr] 16: 0x55fa8092f352 - cmake::run::ha62d844777980f66 [INFO] [stderr] 17: 0x55fa8092b68d - cmake::Config::build::h56d1aca317b15e9c [INFO] [stderr] 18: 0x55fa80924840 - build_script_build::main::h2e202d392af5c456 [INFO] [stderr] 19: 0x55fa80925cd3 - core::ops::function::FnOnce::call_once::hef30417c26a16bc8 [INFO] [stderr] 20: 0x55fa809263d9 - std::sys_common::backtrace::__rust_begin_short_backtrace::h397233eb751bf284 [INFO] [stderr] 21: 0x55fa80926149 - std::rt::lang_start::{{closure}}::h856fd0df882385a3 [INFO] [stderr] 22: 0x55fa80993c5a - core::ops::function::impls:: for &F>::call_once::hccffb0872f46e99d [INFO] [stderr] at /rustc/3d9fdbff4f377de96b3a51174e7a64086bee9a5c/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 23: 0x55fa80993c5a - std::panicking::try::do_call::h814e0410256bb9f2 [INFO] [stderr] at /rustc/3d9fdbff4f377de96b3a51174e7a64086bee9a5c/library/std/src/panicking.rs:401:40 [INFO] [stderr] 24: 0x55fa80993c5a - std::panicking::try::h97cbec2057cc2c0d [INFO] [stderr] at /rustc/3d9fdbff4f377de96b3a51174e7a64086bee9a5c/library/std/src/panicking.rs:365:19 [INFO] [stderr] 25: 0x55fa80993c5a - std::panic::catch_unwind::h964f35f6fa41d1d7 [INFO] [stderr] at /rustc/3d9fdbff4f377de96b3a51174e7a64086bee9a5c/library/std/src/panic.rs:434:14 [INFO] [stderr] 26: 0x55fa80993c5a - std::rt::lang_start_internal::{{closure}}::hb97931cf27086d8b [INFO] [stderr] at /rustc/3d9fdbff4f377de96b3a51174e7a64086bee9a5c/library/std/src/rt.rs:45:48 [INFO] [stderr] 27: 0x55fa80993c5a - std::panicking::try::do_call::hf0d61be342e8297a [INFO] [stderr] at /rustc/3d9fdbff4f377de96b3a51174e7a64086bee9a5c/library/std/src/panicking.rs:401:40 [INFO] [stderr] 28: 0x55fa80993c5a - std::panicking::try::h6b40eeb22db57b23 [INFO] [stderr] at /rustc/3d9fdbff4f377de96b3a51174e7a64086bee9a5c/library/std/src/panicking.rs:365:19 [INFO] [stderr] 29: 0x55fa80993c5a - std::panic::catch_unwind::h425af95fffdb0cf5 [INFO] [stderr] at /rustc/3d9fdbff4f377de96b3a51174e7a64086bee9a5c/library/std/src/panic.rs:434:14 [INFO] [stderr] 30: 0x55fa80993c5a - std::rt::lang_start_internal::h21e355575f2fedc7 [INFO] [stderr] at /rustc/3d9fdbff4f377de96b3a51174e7a64086bee9a5c/library/std/src/rt.rs:45:20 [INFO] [stderr] 31: 0x55fa80926121 - std::rt::lang_start::he65e8effe3858d72 [INFO] [stderr] 32: 0x55fa80925473 - main [INFO] [stderr] 33: 0x7feb187760b3 - __libc_start_main [INFO] [stderr] 34: 0x55fa80921abe - _start [INFO] [stderr] 35: 0x0 - [INFO] running `Command { std: "docker" "inspect" "196bd033d8594377a3605f3649483d38260d48c2cfedbcab2304ecc79b274606", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "196bd033d8594377a3605f3649483d38260d48c2cfedbcab2304ecc79b274606", kill_on_drop: false }` [INFO] [stdout] 196bd033d8594377a3605f3649483d38260d48c2cfedbcab2304ecc79b274606