[INFO] fetching crate hdf5-sys 0.7.1... [INFO] checking hdf5-sys-0.7.1 against master#90442458ac46b1d5eed752c316da25450f67285b for pr-81477 [INFO] extracting crate hdf5-sys 0.7.1 into /workspace/builds/worker-14/source [INFO] validating manifest of crates.io crate hdf5-sys 0.7.1 on toolchain 90442458ac46b1d5eed752c316da25450f67285b [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+90442458ac46b1d5eed752c316da25450f67285b" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate hdf5-sys 0.7.1 [INFO] finished tweaking crates.io crate hdf5-sys 0.7.1 [INFO] tweaked toml for crates.io crate hdf5-sys 0.7.1 written to /workspace/builds/worker-14/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+90442458ac46b1d5eed752c316da25450f67285b" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+90442458ac46b1d5eed752c316da25450f67285b" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:ea7d7bff36b2ba8ce4de8bba1d2dea90376bc481f1a945a913994a8c492e40c1" "/opt/rustwide/cargo-home/bin/cargo" "+90442458ac46b1d5eed752c316da25450f67285b" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] f0eebdd8ca322b4bff06459706aa81ce07c000eedcce87b788ffc705d54b3e5a [INFO] running `Command { std: "docker" "start" "-a" "f0eebdd8ca322b4bff06459706aa81ce07c000eedcce87b788ffc705d54b3e5a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "f0eebdd8ca322b4bff06459706aa81ce07c000eedcce87b788ffc705d54b3e5a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f0eebdd8ca322b4bff06459706aa81ce07c000eedcce87b788ffc705d54b3e5a", kill_on_drop: false }` [INFO] [stdout] f0eebdd8ca322b4bff06459706aa81ce07c000eedcce87b788ffc705d54b3e5a [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:ea7d7bff36b2ba8ce4de8bba1d2dea90376bc481f1a945a913994a8c492e40c1" "/opt/rustwide/cargo-home/bin/cargo" "+90442458ac46b1d5eed752c316da25450f67285b" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 2db047326aa22206f9cc2f9d9de6c6a211b402f77896e6232c27619142f4a0e0 [INFO] running `Command { std: "docker" "start" "-a" "2db047326aa22206f9cc2f9d9de6c6a211b402f77896e6232c27619142f4a0e0", kill_on_drop: false }` [INFO] [stderr] Compiling memchr v2.4.0 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling libc v0.2.97 [INFO] [stderr] Compiling libloading v0.6.7 [INFO] [stderr] Compiling aho-corasick v0.7.18 [INFO] [stderr] Compiling regex v1.5.4 [INFO] [stderr] Compiling hdf5-sys v0.7.1 (/opt/rustwide/workdir) [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.1 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-4ef1eafef34fd08b/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55de3468d8d0 - std::backtrace_rs::backtrace::libunwind::trace::h4e80f45db05e9df0 [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x55de3468d8d0 - std::backtrace_rs::backtrace::trace_unsynchronized::h9db62a3d3587f6c3 [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55de3468d8d0 - std::sys_common::backtrace::_print_fmt::h2fafbe52c9090591 [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55de3468d8d0 - ::fmt::h7d41ae04358c516d [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55de346ac0fc - core::fmt::write::h968e6400cbc51d6a [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/core/src/fmt/mod.rs:1115:17 [INFO] [stderr] 5: 0x55de3468ace5 - std::io::Write::write_fmt::h2eaa97c6f8c9e829 [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/io/mod.rs:1642:15 [INFO] [stderr] 6: 0x55de3468f93b - std::sys_common::backtrace::_print::h601a6bc581f240d5 [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55de3468f93b - std::sys_common::backtrace::print::h8b96e15ba64b8e64 [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55de3468f93b - std::panicking::default_hook::{{closure}}::h94fa9d2f08c20620 [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x55de3468f411 - std::panicking::default_hook::h6d463f5a2e9d9986 [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x55de34690004 - std::panicking::rust_panic_with_hook::h1e953652a338573e [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/panicking.rs:622:17 [INFO] [stderr] 11: 0x55de345d07a3 - std::panicking::begin_panic::{{closure}}::h7d07d5c23468f3f7 [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/panicking.rs:542:9 [INFO] [stderr] 12: 0x55de345d0629 - std::sys_common::backtrace::__rust_end_short_backtrace::h4165981b91f2a5b9 [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55de345d06d9 - std::panicking::begin_panic::hc9036d5af842be26 [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/panicking.rs:541:12 [INFO] [stderr] 14: 0x55de34488ea7 - build_script_build::LibrarySearcher::try_locate_hdf5_library::h50d13035724a0f35 [INFO] [stderr] at /opt/rustwide/workdir/build.rs:549:13 [INFO] [stderr] 15: 0x55de3448a6cb - build_script_build::main::h31249914e70c647a [INFO] [stderr] at /opt/rustwide/workdir/build.rs:647:9 [INFO] [stderr] 16: 0x55de3448e44b - core::ops::function::FnOnce::call_once::h361dc33dce8017ca [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x55de34494a5e - std::sys_common::backtrace::__rust_begin_short_backtrace::ha75f8ef09782fffe [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x55de34492fb1 - std::rt::lang_start::{{closure}}::h81656d6a03f638d8 [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/rt.rs:63:18 [INFO] [stderr] 19: 0x55de3469050a - core::ops::function::impls:: for &F>::call_once::hccffb0872f46e99d [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x55de3469050a - std::panicking::try::do_call::h814e0410256bb9f2 [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/panicking.rs:401:40 [INFO] [stderr] 21: 0x55de3469050a - std::panicking::try::h97cbec2057cc2c0d [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/panicking.rs:365:19 [INFO] [stderr] 22: 0x55de3469050a - std::panic::catch_unwind::h964f35f6fa41d1d7 [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/panic.rs:434:14 [INFO] [stderr] 23: 0x55de3469050a - std::rt::lang_start_internal::{{closure}}::hb97931cf27086d8b [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/rt.rs:45:48 [INFO] [stderr] 24: 0x55de3469050a - std::panicking::try::do_call::hf0d61be342e8297a [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/panicking.rs:401:40 [INFO] [stderr] 25: 0x55de3469050a - std::panicking::try::h6b40eeb22db57b23 [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/panicking.rs:365:19 [INFO] [stderr] 26: 0x55de3469050a - std::panic::catch_unwind::h425af95fffdb0cf5 [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/panic.rs:434:14 [INFO] [stderr] 27: 0x55de3469050a - std::rt::lang_start_internal::h21e355575f2fedc7 [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/rt.rs:45:20 [INFO] [stderr] 28: 0x55de34492f80 - std::rt::lang_start::h703d19187e045dec [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/rt.rs:62:5 [INFO] [stderr] 29: 0x55de3448bbbc - main [INFO] [stderr] 30: 0x7f6d6235b0b3 - __libc_start_main [INFO] [stderr] 31: 0x55de34483efe - _start [INFO] [stderr] 32: 0x0 - [INFO] running `Command { std: "docker" "inspect" "2db047326aa22206f9cc2f9d9de6c6a211b402f77896e6232c27619142f4a0e0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2db047326aa22206f9cc2f9d9de6c6a211b402f77896e6232c27619142f4a0e0", kill_on_drop: false }` [INFO] [stdout] 2db047326aa22206f9cc2f9d9de6c6a211b402f77896e6232c27619142f4a0e0