[INFO] fetching crate cartograph 0.1.2... [INFO] checking cartograph-0.1.2 against master#90442458ac46b1d5eed752c316da25450f67285b for pr-81477 [INFO] extracting crate cartograph 0.1.2 into /workspace/builds/worker-1/source [INFO] validating manifest of crates.io crate cartograph 0.1.2 on toolchain 90442458ac46b1d5eed752c316da25450f67285b [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+90442458ac46b1d5eed752c316da25450f67285b" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate cartograph 0.1.2 [INFO] finished tweaking crates.io crate cartograph 0.1.2 [INFO] tweaked toml for crates.io crate cartograph 0.1.2 written to /workspace/builds/worker-1/source/Cargo.toml [INFO] crate crates.io crate cartograph 0.1.2 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+90442458ac46b1d5eed752c316da25450f67285b" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+90442458ac46b1d5eed752c316da25450f67285b" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] dc7d0b95365468ecb5dc88d98bfcf40af2aa4d52f34611ff7cc3065437c7a793 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "dc7d0b95365468ecb5dc88d98bfcf40af2aa4d52f34611ff7cc3065437c7a793", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "dc7d0b95365468ecb5dc88d98bfcf40af2aa4d52f34611ff7cc3065437c7a793", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "dc7d0b95365468ecb5dc88d98bfcf40af2aa4d52f34611ff7cc3065437c7a793", kill_on_drop: false }` [INFO] [stdout] dc7d0b95365468ecb5dc88d98bfcf40af2aa4d52f34611ff7cc3065437c7a793 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+90442458ac46b1d5eed752c316da25450f67285b" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 68d2c95835d474eb83e0eee738135fd9084f8ebc09adf5b562baf18f4affe46e [INFO] running `Command { std: "docker" "start" "-a" "68d2c95835d474eb83e0eee738135fd9084f8ebc09adf5b562baf18f4affe46e", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling getrandom v0.1.15 [INFO] [stderr] Compiling syn v1.0.48 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Compiling const_fn v0.4.3 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Checking cfg-if v1.0.0 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Checking either v1.6.1 [INFO] [stderr] Compiling regex-syntax v0.6.21 [INFO] [stderr] Compiling ppv-lite86 v0.2.10 [INFO] [stderr] Compiling cc v1.0.62 [INFO] [stderr] Compiling siphasher v0.3.3 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Checking rawpointer v0.1.0 [INFO] [stderr] Compiling netcdf-sys v0.3.3 [INFO] [stderr] Checking hashbrown v0.9.1 [INFO] [stderr] Compiling paste v1.0.2 [INFO] [stderr] Checking unicode-width v0.1.8 [INFO] [stderr] Checking bytemuck v1.4.1 [INFO] [stderr] Checking ucd-trie v0.1.3 [INFO] [stderr] Checking itoa v0.4.6 [INFO] [stderr] Checking number_prefix v0.3.0 [INFO] [stderr] Checking slice-of-array v0.2.1 [INFO] [stderr] Checking hex v0.4.2 [INFO] [stderr] Compiling libloading v0.6.5 [INFO] [stderr] Compiling generic-array v0.14.4 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Checking itertools v0.7.11 [INFO] [stderr] Checking itertools v0.8.2 [INFO] [stderr] Checking matrixmultiply v0.2.3 [INFO] [stderr] Compiling phf_shared v0.8.0 [INFO] [stderr] Checking rgb v0.8.25 [INFO] [stderr] Checking libc v0.2.80 [INFO] [stderr] Checking pest v2.1.3 [INFO] [stderr] Checking libm v0.2.1 [INFO] [stderr] Checking memchr v2.3.4 [INFO] [stderr] Checking typenum v1.12.0 [INFO] [stderr] Checking matrixmultiply v0.1.15 [INFO] [stderr] Checking ryu v1.0.5 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling crossbeam-utils v0.8.0 [INFO] [stderr] Compiling memoffset v0.5.6 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling rayon v1.5.0 [INFO] [stderr] Compiling indexmap v1.6.0 [INFO] [stderr] Compiling num-rational v0.3.2 [INFO] [stderr] Checking phf v0.8.0 [INFO] [stderr] Checking ansi_rgb v0.2.0 [INFO] [stderr] Checking aho-corasick v0.7.15 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking terminal_size v0.1.13 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking colored v2.0.0 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking rand_pcg v0.2.1 [INFO] [stderr] Compiling libz-sys v1.1.2 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking regex v1.4.2 [INFO] [stderr] Checking approx v0.4.0 [INFO] [stderr] Checking approx v0.3.2 [INFO] [stderr] Checking noisy_float v0.1.13 [INFO] [stderr] Checking crossbeam-epoch v0.9.0 [INFO] [stderr] Checking crossbeam-channel v0.5.0 [INFO] [stderr] Checking crossbeam-deque v0.8.0 [INFO] [stderr] Checking rand_distr v0.3.0 [INFO] [stderr] Checking rayon-core v1.9.0 [INFO] [stderr] Compiling phf_generator v0.8.0 [INFO] [stderr] Checking console v0.13.0 [INFO] [stderr] Compiling phf_codegen v0.8.0 [INFO] [stderr] Compiling palette v0.5.0 [INFO] [stderr] Checking indicatif v0.15.0 [INFO] [stderr] Compiling pest_generator v2.1.3 [INFO] [stderr] Compiling hdf5-sys v0.7.0 [INFO] [stderr] Checking ndarray-parallel v0.9.1 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-3a856165a084bfe8/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55f362982ad0 - std::backtrace_rs::backtrace::libunwind::trace::h4e80f45db05e9df0 [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x55f362982ad0 - std::backtrace_rs::backtrace::trace_unsynchronized::h9db62a3d3587f6c3 [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55f362982ad0 - std::sys_common::backtrace::_print_fmt::h2fafbe52c9090591 [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55f362982ad0 - ::fmt::h7d41ae04358c516d [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55f3629a12fc - core::fmt::write::h968e6400cbc51d6a [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/core/src/fmt/mod.rs:1115:17 [INFO] [stderr] 5: 0x55f36297fee5 - std::io::Write::write_fmt::h2eaa97c6f8c9e829 [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/io/mod.rs:1642:15 [INFO] [stderr] 6: 0x55f362984b3b - std::sys_common::backtrace::_print::h601a6bc581f240d5 [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55f362984b3b - std::sys_common::backtrace::print::h8b96e15ba64b8e64 [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55f362984b3b - std::panicking::default_hook::{{closure}}::h94fa9d2f08c20620 [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x55f362984611 - std::panicking::default_hook::h6d463f5a2e9d9986 [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x55f362985204 - std::panicking::rust_panic_with_hook::h1e953652a338573e [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/panicking.rs:622:17 [INFO] [stderr] 11: 0x55f3627b1613 - std::panicking::begin_panic::{{closure}}::h70564cf5bef47436 [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/panicking.rs:542:9 [INFO] [stderr] 12: 0x55f3627ac8a9 - std::sys_common::backtrace::__rust_end_short_backtrace::h0884eea295f946a1 [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55f3627b1549 - std::panicking::begin_panic::h4c24e83f9bc31714 [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/panicking.rs:541:12 [INFO] [stderr] 14: 0x55f362781d87 - build_script_build::LibrarySearcher::try_locate_hdf5_library::h5a4e1713dcbd5d9a [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] 15: 0x55f3627835ab - build_script_build::main::h492b714991522dc3 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647:9 [INFO] [stderr] 16: 0x55f36278740b - core::ops::function::FnOnce::call_once::hce7fa2ae10717bd2 [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x55f36278da4e - std::sys_common::backtrace::__rust_begin_short_backtrace::he7ef6447d438f2e7 [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x55f36278bf21 - std::rt::lang_start::{{closure}}::hff3e8d37f7da64fa [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/rt.rs:63:18 [INFO] [stderr] 19: 0x55f36298570a - core::ops::function::impls:: for &F>::call_once::hccffb0872f46e99d [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x55f36298570a - std::panicking::try::do_call::h814e0410256bb9f2 [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/panicking.rs:401:40 [INFO] [stderr] 21: 0x55f36298570a - std::panicking::try::h97cbec2057cc2c0d [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/panicking.rs:365:19 [INFO] [stderr] 22: 0x55f36298570a - std::panic::catch_unwind::h964f35f6fa41d1d7 [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/panic.rs:434:14 [INFO] [stderr] 23: 0x55f36298570a - std::rt::lang_start_internal::{{closure}}::hb97931cf27086d8b [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/rt.rs:45:48 [INFO] [stderr] 24: 0x55f36298570a - std::panicking::try::do_call::hf0d61be342e8297a [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/panicking.rs:401:40 [INFO] [stderr] 25: 0x55f36298570a - std::panicking::try::h6b40eeb22db57b23 [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/panicking.rs:365:19 [INFO] [stderr] 26: 0x55f36298570a - std::panic::catch_unwind::h425af95fffdb0cf5 [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/panic.rs:434:14 [INFO] [stderr] 27: 0x55f36298570a - std::rt::lang_start_internal::h21e355575f2fedc7 [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/rt.rs:45:20 [INFO] [stderr] 28: 0x55f36278bef0 - std::rt::lang_start::h2191ba09fedca7bb [INFO] [stderr] at /rustc/90442458ac46b1d5eed752c316da25450f67285b/library/std/src/rt.rs:62:5 [INFO] [stderr] 29: 0x55f362784a9c - main [INFO] [stderr] 30: 0x7fcb745330b3 - __libc_start_main [INFO] [stderr] 31: 0x55f36277cefe - _start [INFO] [stderr] 32: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "68d2c95835d474eb83e0eee738135fd9084f8ebc09adf5b562baf18f4affe46e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "68d2c95835d474eb83e0eee738135fd9084f8ebc09adf5b562baf18f4affe46e", kill_on_drop: false }` [INFO] [stdout] 68d2c95835d474eb83e0eee738135fd9084f8ebc09adf5b562baf18f4affe46e