[INFO] cloning repository https://github.com/clinico-omics/omics-tools
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/clinico-omics/omics-tools" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclinico-omics%2Fomics-tools", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclinico-omics%2Fomics-tools'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 225d596d6872b010a31f9f8703e5294decfa73ef
[INFO] checking clinico-omics/omics-tools against master#90442458ac46b1d5eed752c316da25450f67285b for pr-81477
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclinico-omics%2Fomics-tools" "/workspace/builds/worker-7/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-7/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/clinico-omics/omics-tools on toolchain 90442458ac46b1d5eed752c316da25450f67285b
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+90442458ac46b1d5eed752c316da25450f67285b" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] removed /workspace/builds/worker-7/source/.cargo/config.toml
[INFO] started tweaking git repo https://github.com/clinico-omics/omics-tools
[INFO] finished tweaking git repo https://github.com/clinico-omics/omics-tools
[INFO] tweaked toml for git repo https://github.com/clinico-omics/omics-tools written to /workspace/builds/worker-7/source/Cargo.toml
[INFO] crate git repo https://github.com/clinico-omics/omics-tools already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+90442458ac46b1d5eed752c316da25450f67285b" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: profiles for the non root package will be ignored, specify profiles at the workspace root:
[INFO] [stderr] package:   /workspace/builds/worker-7/source/bam-util/Cargo.toml
[INFO] [stderr] workspace: /workspace/builds/worker-7/source/Cargo.toml
[INFO] [stderr] warning: profiles for the non root package will be ignored, specify profiles at the workspace root:
[INFO] [stderr] package:   /workspace/builds/worker-7/source/vcf-util/Cargo.toml
[INFO] [stderr] workspace: /workspace/builds/worker-7/source/Cargo.toml
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+90442458ac46b1d5eed752c316da25450f67285b" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 02aced0be14110bd0a80a4cdbbc66d587c65d727905cd5537f22241eb39d0cdb
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "02aced0be14110bd0a80a4cdbbc66d587c65d727905cd5537f22241eb39d0cdb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "02aced0be14110bd0a80a4cdbbc66d587c65d727905cd5537f22241eb39d0cdb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "02aced0be14110bd0a80a4cdbbc66d587c65d727905cd5537f22241eb39d0cdb", kill_on_drop: false }`
[INFO] [stdout] 02aced0be14110bd0a80a4cdbbc66d587c65d727905cd5537f22241eb39d0cdb
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+90442458ac46b1d5eed752c316da25450f67285b" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 65f0f8da221e607feb99ce23297b1fec4ba7280014df5ce70f4de7e49806e904
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "65f0f8da221e607feb99ce23297b1fec4ba7280014df5ce70f4de7e49806e904", kill_on_drop: false }`
[INFO] [stderr] warning: profiles for the non root package will be ignored, specify profiles at the workspace root:
[INFO] [stderr] package:   /opt/rustwide/workdir/bam-util/Cargo.toml
[INFO] [stderr] workspace: /opt/rustwide/workdir/Cargo.toml
[INFO] [stderr] warning: profiles for the non root package will be ignored, specify profiles at the workspace root:
[INFO] [stderr] package:   /opt/rustwide/workdir/vcf-util/Cargo.toml
[INFO] [stderr] workspace: /opt/rustwide/workdir/Cargo.toml
[INFO] [stderr]    Compiling autocfg v1.0.1
[INFO] [stderr]    Compiling pkg-config v0.3.19
[INFO] [stderr]     Checking cfg-if v1.0.0
[INFO] [stderr]    Compiling bitflags v1.2.1
[INFO] [stderr]    Compiling unicode-segmentation v1.7.1
[INFO] [stderr]     Checking lazy_static v1.4.0
[INFO] [stderr]     Checking unicode-width v0.1.8
[INFO] [stderr]     Checking lazy_static v0.2.11
[INFO] [stderr]    Compiling proc-macro2 v0.4.30
[INFO] [stderr]     Checking ansi_term v0.11.0
[INFO] [stderr]     Checking strsim v0.8.0
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]     Checking matches v0.1.8
[INFO] [stderr]    Compiling unicode-xid v0.1.0
[INFO] [stderr]    Compiling ryu v1.0.5
[INFO] [stderr]     Checking gimli v0.24.0
[INFO] [stderr]     Checking exitcode v1.1.2
[INFO] [stderr]     Checking static_assertions v1.1.0
[INFO] [stderr]     Checking percent-encoding v2.1.0
[INFO] [stderr]     Checking fallible-iterator v0.2.0
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling nom v5.1.2
[INFO] [stderr]     Checking textwrap v0.11.0
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]     Checking unicode-bidi v0.3.5
[INFO] [stderr]    Compiling libc v0.2.94
[INFO] [stderr]     Checking log v0.4.14
[INFO] [stderr]     Checking thread_local v0.3.4
[INFO] [stderr]     Checking unicode-normalization v0.1.17
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking hashlink v0.6.0
[INFO] [stderr]     Checking crc32fast v1.2.1
[INFO] [stderr]    Compiling heck v0.3.2
[INFO] [stderr]     Checking atty v0.2.11
[INFO] [stderr]     Checking form_urlencoded v1.0.1
[INFO] [stderr]    Compiling syn v1.0.72
[INFO] [stderr]     Checking regex v1.5.4
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling miniz_oxide v0.4.4
[INFO] [stderr]     Checking clap v2.33.3
[INFO] [stderr]     Checking lexical-core v0.7.6
[INFO] [stderr]    Compiling jobserver v0.1.22
[INFO] [stderr]    Compiling cc v1.0.67
[INFO] [stderr]    Compiling quote v0.6.13
[INFO] [stderr]    Compiling syn v0.15.44
[INFO] [stderr]     Checking idna v0.2.3
[INFO] [stderr]    Compiling openssl-src v111.15.0+1.1.1k
[INFO] [stderr]     Checking url v2.2.2
[INFO] [stderr]    Compiling libz-sys v1.1.3
[INFO] [stderr]    Compiling curl-sys v0.4.43+curl-7.76.0
[INFO] [stderr]    Compiling lzma-sys v0.1.17
[INFO] [stderr]    Compiling bzip2-sys v0.1.10+1.0.8
[INFO] [stderr]    Compiling backtrace v0.3.59
[INFO] [stderr]    Compiling hts-sys v1.11.1-fix1
[INFO] [stderr]    Compiling libsqlite3-sys v0.20.1
[INFO] [stderr]    Compiling cloudflare-zlib-sys v0.2.0
[INFO] [stderr]    Compiling openssl-sys v0.9.63
[INFO] [stderr]     Checking addr2line v0.15.1
[INFO] [stderr]     Checking chrono v0.4.19
[INFO] [stderr] error: could not compile `syn`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `rustc --crate-name syn --edition=2018 /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/syn-1.0.72/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debuginfo=2 --cfg 'feature="clone-impls"' --cfg 'feature="default"' --cfg 'feature="derive"' --cfg 'feature="extra-traits"' --cfg 'feature="full"' --cfg 'feature="parsing"' --cfg 'feature="printing"' --cfg 'feature="proc-macro"' --cfg 'feature="quote"' --cfg 'feature="visit"' -C metadata=6118304e4d7eae5c -C extra-filename=-6118304e4d7eae5c --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern proc_macro2=/opt/rustwide/target/debug/deps/libproc_macro2-23608f24c3a1574e.rmeta --extern quote=/opt/rustwide/target/debug/deps/libquote-6d7a5e7a3e5f505c.rmeta --extern unicode_xid=/opt/rustwide/target/debug/deps/libunicode_xid-38987aa89d2b0d41.rmeta --cap-lints allow --cap-lints=forbid` (signal: 9, SIGKILL: kill)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: build failed
[INFO] running `Command { std: "docker" "inspect" "65f0f8da221e607feb99ce23297b1fec4ba7280014df5ce70f4de7e49806e904", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "65f0f8da221e607feb99ce23297b1fec4ba7280014df5ce70f4de7e49806e904", kill_on_drop: false }`
[INFO] [stdout] 65f0f8da221e607feb99ce23297b1fec4ba7280014df5ce70f4de7e49806e904