[INFO] cloning repository https://github.com/oicr-gsi/barcodex-rs
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/oicr-gsi/barcodex-rs" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Foicr-gsi%2Fbarcodex-rs", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Foicr-gsi%2Fbarcodex-rs'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 192d1d201dd44715945965621224021ec55e1c43
[INFO] checking oicr-gsi/barcodex-rs against master#339e19697a39a78f4d669c217b7d21109215de41 for pr-81213
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Foicr-gsi%2Fbarcodex-rs" "/workspace/builds/worker-8/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-8/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/oicr-gsi/barcodex-rs on toolchain 339e19697a39a78f4d669c217b7d21109215de41
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+339e19697a39a78f4d669c217b7d21109215de41" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/oicr-gsi/barcodex-rs
[INFO] finished tweaking git repo https://github.com/oicr-gsi/barcodex-rs
[INFO] tweaked toml for git repo https://github.com/oicr-gsi/barcodex-rs written to /workspace/builds/worker-8/source/Cargo.toml
[INFO] crate git repo https://github.com/oicr-gsi/barcodex-rs already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+339e19697a39a78f4d669c217b7d21109215de41" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] error: the lock file /workspace/builds/worker-8/source/Cargo.lock needs to be updated but --locked was passed to prevent this
[INFO] [stderr] If you want to try to generate the lock file without accessing the network, use the --offline flag.
[INFO] the lockfile is outdated, regenerating it
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+339e19697a39a78f4d669c217b7d21109215de41" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+339e19697a39a78f4d669c217b7d21109215de41" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:21f1ed92105a0ef9b0d27ad8bdeb7f36f9f01ac17fffe3a3f3dc5241fc25d8f4" "/opt/rustwide/cargo-home/bin/cargo" "+339e19697a39a78f4d669c217b7d21109215de41" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 53fc0cce634e1cc06f4bafc504f82a035c3637f068b9a27325486d0829054bdd
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "53fc0cce634e1cc06f4bafc504f82a035c3637f068b9a27325486d0829054bdd", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "53fc0cce634e1cc06f4bafc504f82a035c3637f068b9a27325486d0829054bdd", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "53fc0cce634e1cc06f4bafc504f82a035c3637f068b9a27325486d0829054bdd", kill_on_drop: false }`
[INFO] [stdout] 53fc0cce634e1cc06f4bafc504f82a035c3637f068b9a27325486d0829054bdd
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:21f1ed92105a0ef9b0d27ad8bdeb7f36f9f01ac17fffe3a3f3dc5241fc25d8f4" "/opt/rustwide/cargo-home/bin/cargo" "+339e19697a39a78f4d669c217b7d21109215de41" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 3974883d79b798e44ec0938cacb0799925c136ae5dcaea9f8b567da3210c2790
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "3974883d79b798e44ec0938cacb0799925c136ae5dcaea9f8b567da3210c2790", kill_on_drop: false }`
[INFO] [stderr]    Compiling syn v1.0.60
[INFO] [stderr]    Compiling ryu v1.0.5
[INFO] [stderr]     Checking byteorder v1.4.2
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]     Checking itoa v0.4.7
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling bio v0.31.0
[INFO] [stderr]     Checking fixedbitset v0.1.9
[INFO] [stderr]     Checking bit-vec v0.6.3
[INFO] [stderr]     Checking hashbrown v0.9.1
[INFO] [stderr]    Compiling serde_json v1.0.61
[INFO] [stderr]     Checking ordermap v0.3.5
[INFO] [stderr]     Checking bytecount v0.6.2
[INFO] [stderr]     Checking fnv v1.0.7
[INFO] [stderr]    Compiling serde_derive v1.0.123
[INFO] [stderr]    Compiling serde v1.0.123
[INFO] [stderr]    Compiling libc v0.2.82
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling getrandom v0.1.16
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling indexmap v1.6.1
[INFO] [stderr]     Checking textwrap v0.12.1
[INFO] [stderr]     Checking matrixmultiply v0.2.4
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking bit-set v0.5.2
[INFO] [stderr]     Checking csv-core v0.1.10
[INFO] [stderr]     Checking regex-automata v0.1.9
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking regex v1.4.3
[INFO] [stderr]     Checking petgraph v0.4.13
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking flate2 v1.0.19
[INFO] [stderr]     Checking rand_core v0.5.1
[INFO] [stderr]     Checking rand_chacha v0.2.2
[INFO] [stderr]     Checking rand v0.7.3
[INFO] [stderr]     Checking ordered-float v1.1.1
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking approx v0.3.2
[INFO] [stderr]     Checking ndarray v0.13.1
[INFO] [stderr]     Checking statrs v0.12.0
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling snafu-derive v0.6.10
[INFO] [stderr]    Compiling strum_macros v0.20.1
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling clap_derive v3.0.0-beta.2
[INFO] [stderr]    Compiling strum_macros v0.18.0
[INFO] [stderr]     Checking bio-types v0.10.0
[INFO] [stderr]     Checking snafu v0.6.10
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking bstr v0.2.14
[INFO] [stderr]     Checking bv v0.11.1
[INFO] [stderr]     Checking multimap v0.6.0
[INFO] [stderr]     Checking bio-types v0.7.0
[INFO] [stderr]     Checking clap v3.0.0-beta.2
[INFO] [stderr]     Checking csv v1.1.5
[INFO] [stderr]     Checking barcodex-rs v0.1.2 (/opt/rustwide/workdir)
[INFO] [stdout] error[E0599]: no method named `name` found for reference `&bio::io::fastq::Record` in the current scope
[INFO] [stdout]    --> src/main.rs:277:21
[INFO] [stdout]     |
[INFO] [stdout] 277 |         self.read().name()
[INFO] [stdout]     |                     ^^^^ method not found in `&bio::io::fastq::Record`
[INFO] [stdout]     |
[INFO] [stdout]     = help: items from traits can only be used if the trait is in scope
[INFO] [stdout] help: the following trait is implemented but not in scope; perhaps add a `use` for it:
[INFO] [stdout]     |
[INFO] [stdout] 1   | use bio_types::sequence::SequenceRead;
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `name` found for reference `&bio::io::fastq::Record` in the current scope
[INFO] [stdout]    --> src/main.rs:277:21
[INFO] [stdout]     |
[INFO] [stdout] 277 |         self.read().name()
[INFO] [stdout]     |                     ^^^^ method not found in `&bio::io::fastq::Record`
[INFO] [stdout]     |
[INFO] [stdout]     = help: items from traits can only be used if the trait is in scope
[INFO] [stdout] help: the following trait is implemented but not in scope; perhaps add a `use` for it:
[INFO] [stdout]     |
[INFO] [stdout] 1   | use bio_types::sequence::SequenceRead;
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `bio_types::sequence::SequenceRead`
[INFO] [stdout]  --> src/main.rs:1:5
[INFO] [stdout]   |
[INFO] [stdout] 1 | use bio_types::sequence::SequenceRead;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to previous error; 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0599`.
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `bio_types::sequence::SequenceRead`
[INFO] [stdout]  --> src/main.rs:1:5
[INFO] [stdout]   |
[INFO] [stdout] 1 | use bio_types::sequence::SequenceRead;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to previous error; 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0599`.
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `barcodex-rs`
[INFO] [stderr] 
[INFO] [stderr] To learn more, run the command again with --verbose.
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: build failed
[INFO] running `Command { std: "docker" "inspect" "3974883d79b798e44ec0938cacb0799925c136ae5dcaea9f8b567da3210c2790", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3974883d79b798e44ec0938cacb0799925c136ae5dcaea9f8b567da3210c2790", kill_on_drop: false }`
[INFO] [stdout] 3974883d79b798e44ec0938cacb0799925c136ae5dcaea9f8b567da3210c2790