[INFO] fetching crate openmm-sys 7.4.1... [INFO] checking openmm-sys-7.4.1 against master#4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5 for pr-81174 [INFO] extracting crate openmm-sys 7.4.1 into /workspace/builds/worker-1/source [INFO] validating manifest of crates.io crate openmm-sys 7.4.1 on toolchain 4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate openmm-sys 7.4.1 [INFO] finished tweaking crates.io crate openmm-sys 7.4.1 [INFO] tweaked toml for crates.io crate openmm-sys 7.4.1 written to /workspace/builds/worker-1/source/Cargo.toml [INFO] crate crates.io crate openmm-sys 7.4.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:21f1ed92105a0ef9b0d27ad8bdeb7f36f9f01ac17fffe3a3f3dc5241fc25d8f4" "/opt/rustwide/cargo-home/bin/cargo" "+4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] c2571e1433305ce309f793c3e1e3109f6e77108170ea321fbfc257cdf1abd708 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "c2571e1433305ce309f793c3e1e3109f6e77108170ea321fbfc257cdf1abd708", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "c2571e1433305ce309f793c3e1e3109f6e77108170ea321fbfc257cdf1abd708", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c2571e1433305ce309f793c3e1e3109f6e77108170ea321fbfc257cdf1abd708", kill_on_drop: false }` [INFO] [stdout] c2571e1433305ce309f793c3e1e3109f6e77108170ea321fbfc257cdf1abd708 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:21f1ed92105a0ef9b0d27ad8bdeb7f36f9f01ac17fffe3a3f3dc5241fc25d8f4" "/opt/rustwide/cargo-home/bin/cargo" "+4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 24be902d2f2d674dce403a817fc53437e4ce9b74094335dfcdba399533b6c02a [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "24be902d2f2d674dce403a817fc53437e4ce9b74094335dfcdba399533b6c02a", kill_on_drop: false }` [INFO] [stderr] Compiling cc v1.0.59 [INFO] [stderr] Compiling cmake v0.1.44 [INFO] [stderr] Compiling openmm-sys v7.4.1 (/opt/rustwide/workdir) [INFO] [stderr] The following warnings were emitted during compilation: [INFO] [stderr] [INFO] [stderr] warning: [OpenMM-sys] Dynamically linking against the OpenMM library. [INFO] [stderr] [INFO] [stderr] error: failed to run custom build command for `openmm-sys v7.4.1 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/openmm-sys-b26de29e099dd1b0/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:warning=[OpenMM-sys] Dynamically linking against the OpenMM library. [INFO] [stderr] running: "cmake" "/opt/rustwide/workdir/openmm" "-DOPENMM_BUILD_PYTHON_WRAPPERS=OFF" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/openmm-sys-bca8878d548441e7/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Release" [INFO] [stderr] -- Found PythonInterp: /usr/bin/python (found version "2.7.18") [INFO] [stderr] -- The C compiler identification is GNU 9.3.0 [INFO] [stderr] -- The CXX compiler identification is GNU 9.3.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/rustwide/target/debug/build/openmm-sys-bca8878d548441e7/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] fatal: not a git repository (or any parent up to mount point /opt/rustwide) [INFO] [stderr] Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). [INFO] [stderr] CMake Deprecation Warning at CMakeLists.txt:25 (CMAKE_POLICY): [INFO] [stderr] The OLD behavior for policy CMP0042 will be removed from a future version [INFO] [stderr] of CMake. [INFO] [stderr] [INFO] [stderr] The cmake-policies(7) manual explains that the OLD behaviors of all [INFO] [stderr] policies are deprecated and that a policy should be set to OLD only under [INFO] [stderr] specific short-term circumstances. Projects should be ported to the NEW [INFO] [stderr] behavior and not rely on setting a policy to OLD. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Error at /usr/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:146 (message): [INFO] [stderr] Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) [INFO] [stderr] Call Stack (most recent call first): [INFO] [stderr] /usr/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:393 (_FPHSA_FAILURE_MESSAGE) [INFO] [stderr] /usr/share/cmake-3.16/Modules/FindDoxygen.cmake:633 (find_package_handle_standard_args) [INFO] [stderr] wrappers/CMakeLists.txt:1 (find_package) [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit code: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5634ed814ac7 - std::backtrace_rs::backtrace::libunwind::trace::h8bc78f7bc1f75bdb [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x5634ed814ac7 - std::backtrace_rs::backtrace::trace_unsynchronized::ha4c961c9576f95ba [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x5634ed814ac7 - std::sys_common::backtrace::_print_fmt::hc20cfdc233d6eb02 [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x5634ed814ac7 - ::fmt::h04bea14549780a0f [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x5634ed831d6c - core::fmt::write::h3868db8542c90941 [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/core/src/fmt/mod.rs:1096:17 [INFO] [stderr] 5: 0x5634ed810e42 - std::io::Write::write_fmt::h55dd75636eef6a5c [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/io/mod.rs:1568:15 [INFO] [stderr] 6: 0x5634ed8170b5 - std::sys_common::backtrace::_print::h6439e8525077c7da [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x5634ed8170b5 - std::sys_common::backtrace::print::h02b685f728ce3931 [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x5634ed8170b5 - std::panicking::default_hook::{{closure}}::h7c29625065fafae1 [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x5634ed816c13 - std::panicking::default_hook::hba441710bb71f4d5 [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x5634ed817851 - std::panicking::rust_panic_with_hook::ha936eb00e51bc4d9 [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x5634ed817397 - std::panicking::begin_panic_handler::{{closure}}::hcd15140e0238536e [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/panicking.rs:497:13 [INFO] [stderr] 12: 0x5634ed814f8c - std::sys_common::backtrace::__rust_end_short_backtrace::hb13a021bb64823a1 [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x5634ed8172f9 - rust_begin_unwind [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/panicking.rs:493:5 [INFO] [stderr] 14: 0x5634ed8172ab - std::panicking::begin_panic_fmt::h3ef6798fa589483b [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/panicking.rs:435:5 [INFO] [stderr] 15: 0x5634ed7a4a3e - cmake::fail::ha9854c3a28aebbb8 [INFO] [stderr] 16: 0x5634ed7a43b0 - cmake::run::ha8b7cd72b3c5398b [INFO] [stderr] 17: 0x5634ed79fde2 - cmake::Config::build::h20c71ffe9353ce80 [INFO] [stderr] 18: 0x5634ed79a991 - build_script_build::main::h8195388fbf7fcfb1 [INFO] [stderr] 19: 0x5634ed79b346 - core::ops::function::FnOnce::call_once::hd8a71d40b7155739 [INFO] [stderr] 20: 0x5634ed79b2a9 - std::sys_common::backtrace::__rust_begin_short_backtrace::h0f810f29c2698aff [INFO] [stderr] 21: 0x5634ed79cf9c - std::rt::lang_start::{{closure}}::h9b9550dacd31b57e [INFO] [stderr] 22: 0x5634ed817c77 - core::ops::function::impls:: for &F>::call_once::h7c92107c3c98a949 [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 23: 0x5634ed817c77 - std::panicking::try::do_call::h7454c57e8fbf0cc1 [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/panicking.rs:379:40 [INFO] [stderr] 24: 0x5634ed817c77 - std::panicking::try::he71cdc15ed83b5ec [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/panicking.rs:343:19 [INFO] [stderr] 25: 0x5634ed817c77 - std::panic::catch_unwind::hfc08ddb043e6e18c [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/panic.rs:396:14 [INFO] [stderr] 26: 0x5634ed817c77 - std::rt::lang_start_internal::he4958117ec6901fd [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/rt.rs:51:25 [INFO] [stderr] 27: 0x5634ed79cf78 - std::rt::lang_start::hd208d4221e8284be [INFO] [stderr] 28: 0x5634ed79ab4b - main [INFO] [stderr] 29: 0x7fd42a2800b3 - __libc_start_main [INFO] [stderr] 30: 0x5634ed7970ce - _start [INFO] [stderr] 31: 0x0 - [INFO] running `Command { std: "docker" "inspect" "24be902d2f2d674dce403a817fc53437e4ce9b74094335dfcdba399533b6c02a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "24be902d2f2d674dce403a817fc53437e4ce9b74094335dfcdba399533b6c02a", kill_on_drop: false }` [INFO] [stdout] 24be902d2f2d674dce403a817fc53437e4ce9b74094335dfcdba399533b6c02a