[INFO] fetching crate hdf5 0.7.0... [INFO] checking hdf5-0.7.0 against master#4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5 for pr-81174 [INFO] extracting crate hdf5 0.7.0 into /workspace/builds/worker-11/source [INFO] validating manifest of crates.io crate hdf5 0.7.0 on toolchain 4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate hdf5 0.7.0 [INFO] finished tweaking crates.io crate hdf5 0.7.0 [INFO] tweaked toml for crates.io crate hdf5 0.7.0 written to /workspace/builds/worker-11/source/Cargo.toml [INFO] crate crates.io crate hdf5 0.7.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:21f1ed92105a0ef9b0d27ad8bdeb7f36f9f01ac17fffe3a3f3dc5241fc25d8f4" "/opt/rustwide/cargo-home/bin/cargo" "+4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 1e949e2f94b610172b63149bcef4e3bd83b4fe55c271a0a11ea830ac57fdcedc [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "1e949e2f94b610172b63149bcef4e3bd83b4fe55c271a0a11ea830ac57fdcedc", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "1e949e2f94b610172b63149bcef4e3bd83b4fe55c271a0a11ea830ac57fdcedc", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1e949e2f94b610172b63149bcef4e3bd83b4fe55c271a0a11ea830ac57fdcedc", kill_on_drop: false }` [INFO] [stdout] 1e949e2f94b610172b63149bcef4e3bd83b4fe55c271a0a11ea830ac57fdcedc [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-11/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:21f1ed92105a0ef9b0d27ad8bdeb7f36f9f01ac17fffe3a3f3dc5241fc25d8f4" "/opt/rustwide/cargo-home/bin/cargo" "+4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] f99ba49caf4fb39a10bb783d40888aa8fd928b0f8fe3c0594b2c1550e8e1926e [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "f99ba49caf4fb39a10bb783d40888aa8fd928b0f8fe3c0594b2c1550e8e1926e", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.68 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling autocfg v1.0.0 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling libloading v0.6.0 [INFO] [stderr] Compiling regex-syntax v0.6.17 [INFO] [stderr] Compiling pkg-config v0.3.17 [INFO] [stderr] Compiling proc-macro-hack-impl v0.4.2 [INFO] [stderr] Checking either v1.5.3 [INFO] [stderr] Compiling ndarray v0.13.0 [INFO] [stderr] Checking smallvec v1.3.0 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Checking ascii v1.0.0 [INFO] [stderr] Compiling hdf5 v0.7.0 (/opt/rustwide/workdir) [INFO] [stderr] Checking remove_dir_all v0.5.2 [INFO] [stderr] Checking lock_api v0.3.4 [INFO] [stderr] Checking thread_local v1.0.1 [INFO] [stderr] Checking matrixmultiply v0.2.3 [INFO] [stderr] Checking pretty_assertions v0.6.1 [INFO] [stderr] Checking itertools v0.8.2 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Compiling syn v1.0.17 [INFO] [stderr] Compiling num-traits v0.2.11 [INFO] [stderr] Compiling num-integer v0.1.42 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling aho-corasick v0.7.10 [INFO] [stderr] Compiling proc-macro-hack v0.4.2 [INFO] [stderr] Compiling mashup-impl v0.1.9 [INFO] [stderr] Checking getrandom v0.1.14 [INFO] [stderr] Checking parking_lot_core v0.7.1 [INFO] [stderr] Checking rand v0.4.6 [INFO] [stderr] Checking hdf5-types v0.7.0 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking parking_lot v0.10.2 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking rand_pcg v0.2.1 [INFO] [stderr] Checking mashup v0.1.9 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking tempdir v0.3.7 [INFO] [stderr] Checking regex v1.3.6 [INFO] [stderr] Compiling hdf5-sys v0.7.0 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-5bc796a56200733b/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5563b3830a17 - std::backtrace_rs::backtrace::libunwind::trace::h8bc78f7bc1f75bdb [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x5563b3830a17 - std::backtrace_rs::backtrace::trace_unsynchronized::ha4c961c9576f95ba [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x5563b3830a17 - std::sys_common::backtrace::_print_fmt::hc20cfdc233d6eb02 [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x5563b3830a17 - ::fmt::h04bea14549780a0f [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x5563b384ca4c - core::fmt::write::h3868db8542c90941 [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/core/src/fmt/mod.rs:1096:17 [INFO] [stderr] 5: 0x5563b382d3f2 - std::io::Write::write_fmt::h55dd75636eef6a5c [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/io/mod.rs:1568:15 [INFO] [stderr] 6: 0x5563b3832aa5 - std::sys_common::backtrace::_print::h6439e8525077c7da [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x5563b3832aa5 - std::sys_common::backtrace::print::h02b685f728ce3931 [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x5563b3832aa5 - std::panicking::default_hook::{{closure}}::h7c29625065fafae1 [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x5563b3832603 - std::panicking::default_hook::hba441710bb71f4d5 [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x5563b3833241 - std::panicking::rust_panic_with_hook::ha936eb00e51bc4d9 [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x5563b363ec5e - std::panicking::begin_panic::{{closure}}::h3ce8b1e78c648329 [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/panicking.rs:520:9 [INFO] [stderr] 12: 0x5563b3621e09 - std::sys_common::backtrace::__rust_end_short_backtrace::hfb4b295a4ac0c321 [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x5563b363eb8b - std::panicking::begin_panic::h760efd8672aaa330 [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/panicking.rs:519:12 [INFO] [stderr] 14: 0x5563b360b21b - build_script_build::LibrarySearcher::try_locate_hdf5_library::h6872614cf6638a52 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] 15: 0x5563b360cae5 - build_script_build::main::hde56ac13ba61733e [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647:9 [INFO] [stderr] 16: 0x5563b36108eb - core::ops::function::FnOnce::call_once::he1bccf68b35fd3e7 [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x5563b36105fe - std::sys_common::backtrace::__rust_begin_short_backtrace::h19b4e2ac8e2bee04 [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x5563b3616b81 - std::rt::lang_start::{{closure}}::h83bde4dff3c24664 [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/rt.rs:66:18 [INFO] [stderr] 19: 0x5563b3833667 - core::ops::function::impls:: for &F>::call_once::h7c92107c3c98a949 [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x5563b3833667 - std::panicking::try::do_call::h7454c57e8fbf0cc1 [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/panicking.rs:379:40 [INFO] [stderr] 21: 0x5563b3833667 - std::panicking::try::he71cdc15ed83b5ec [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/panicking.rs:343:19 [INFO] [stderr] 22: 0x5563b3833667 - std::panic::catch_unwind::hfc08ddb043e6e18c [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/panic.rs:396:14 [INFO] [stderr] 23: 0x5563b3833667 - std::rt::lang_start_internal::he4958117ec6901fd [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/rt.rs:51:25 [INFO] [stderr] 24: 0x5563b3616b57 - std::rt::lang_start::h6a9cddc7953e311a [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/rt.rs:65:5 [INFO] [stderr] 25: 0x5563b360e12a - main [INFO] [stderr] 26: 0x7f8eee07a0b3 - __libc_start_main [INFO] [stderr] 27: 0x5563b36060be - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "f99ba49caf4fb39a10bb783d40888aa8fd928b0f8fe3c0594b2c1550e8e1926e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f99ba49caf4fb39a10bb783d40888aa8fd928b0f8fe3c0594b2c1550e8e1926e", kill_on_drop: false }` [INFO] [stdout] f99ba49caf4fb39a10bb783d40888aa8fd928b0f8fe3c0594b2c1550e8e1926e