[INFO] fetching crate flann 0.1.0... [INFO] checking flann-0.1.0 against master#4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5 for pr-81174 [INFO] extracting crate flann 0.1.0 into /workspace/builds/worker-2/source [INFO] validating manifest of crates.io crate flann 0.1.0 on toolchain 4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate flann 0.1.0 [INFO] finished tweaking crates.io crate flann 0.1.0 [INFO] tweaked toml for crates.io crate flann 0.1.0 written to /workspace/builds/worker-2/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:21f1ed92105a0ef9b0d27ad8bdeb7f36f9f01ac17fffe3a3f3dc5241fc25d8f4" "/opt/rustwide/cargo-home/bin/cargo" "+4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] db6d950891b99906e75731576a4d31d8966712df860784f4976c9eb81a436b42 [INFO] running `Command { std: "docker" "start" "-a" "db6d950891b99906e75731576a4d31d8966712df860784f4976c9eb81a436b42", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "db6d950891b99906e75731576a4d31d8966712df860784f4976c9eb81a436b42", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "db6d950891b99906e75731576a4d31d8966712df860784f4976c9eb81a436b42", kill_on_drop: false }` [INFO] [stdout] db6d950891b99906e75731576a4d31d8966712df860784f4976c9eb81a436b42 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:21f1ed92105a0ef9b0d27ad8bdeb7f36f9f01ac17fffe3a3f3dc5241fc25d8f4" "/opt/rustwide/cargo-home/bin/cargo" "+4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 2560e9f240e79c5cd2d9f09c806bb772d294d5082e26dc0f309090858e3af837 [INFO] running `Command { std: "docker" "start" "-a" "2560e9f240e79c5cd2d9f09c806bb772d294d5082e26dc0f309090858e3af837", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.82 [INFO] [stderr] Compiling glob v0.2.11 [INFO] [stderr] Compiling log v0.4.13 [INFO] [stderr] Compiling ucd-util v0.1.8 [INFO] [stderr] Compiling libloading v0.4.3 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Compiling utf8-ranges v1.0.4 [INFO] [stderr] Compiling bindgen v0.32.3 [INFO] [stderr] Compiling syn v1.0.60 [INFO] [stderr] Compiling cc v1.0.66 [INFO] [stderr] Checking gimli v0.23.0 [INFO] [stderr] Checking adler v0.2.3 [INFO] [stderr] Checking object v0.23.0 [INFO] [stderr] Checking rustc-demangle v0.1.18 [INFO] [stderr] Checking assert_approx_eq v1.1.0 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling miniz_oxide v0.4.3 [INFO] [stderr] Checking itertools v0.8.2 [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling proc-macro2 v0.2.3 [INFO] [stderr] Compiling regex-syntax v0.5.6 [INFO] [stderr] Compiling aho-corasick v0.6.10 [INFO] [stderr] Compiling log v0.3.9 [INFO] [stderr] Compiling cmake v0.1.45 [INFO] [stderr] Compiling clang-sys v0.21.2 [INFO] [stderr] Compiling quote v0.4.2 [INFO] [stderr] Compiling memchr v1.0.2 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v1.0.5 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling nom v3.2.1 [INFO] [stderr] Checking addr2line v0.14.1 [INFO] [stderr] Compiling cexpr v0.2.3 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Checking backtrace v0.3.56 [INFO] [stderr] Compiling synstructure v0.12.4 [INFO] [stderr] Compiling env_logger v0.4.3 [INFO] [stderr] Compiling failure_derive v0.1.8 [INFO] [stderr] Checking failure v0.1.8 [INFO] [stderr] Compiling flann-sys v0.1.0 [INFO] [stderr] error: failed to run custom build command for `flann-sys v0.1.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/flann-sys-6e3ac16f998cdcc1/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:rustc-link-lib=gomp [INFO] [stderr] cargo:rustc-link-lib=stdc++ [INFO] [stderr] running: "cmake" "/opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/flann-sys-0.1.0/flann" "-DBUILD_EXAMPLES=OFF" "-DBUILD_TESTS=OFF" "-DBUILD_DOC=OFF" "-DBUILD_PYTHON_BINDINGS=OFF" "-DBUILD_MATLAB_BINDINGS=OFF" "-DUSE_OPENMP=ON" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/flann-sys-f41460c4dff8bf4f/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Debug" [INFO] [stderr] -- The C compiler identification is GNU 9.3.0 [INFO] [stderr] -- The CXX compiler identification is GNU 9.3.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Found PythonInterp: /usr/bin/python (found version "2.7.18") [INFO] [stderr] -- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS) (found version "") [INFO] [stderr] -- Could NOT find GTest (missing: GTEST_LIBRARY GTEST_INCLUDE_DIR GTEST_MAIN_LIBRARY) [INFO] [stderr] -- Found OpenMP_C: -fopenmp (found version "4.5") [INFO] [stderr] -- Found OpenMP_CXX: -fopenmp (found version "4.5") [INFO] [stderr] -- Found OpenMP: TRUE (found version "4.5") [INFO] [stderr] -- Install prefix: /opt/rustwide/target/debug/build/flann-sys-f41460c4dff8bf4f/out [INFO] [stderr] -- Build type: Debug [INFO] [stderr] -- Building C bindings: ON [INFO] [stderr] -- Building examples: OFF [INFO] [stderr] -- Building tests: OFF [INFO] [stderr] -- Building documentation: OFF [INFO] [stderr] -- Building python bindings: OFF [INFO] [stderr] -- Building matlab bindings: OFF [INFO] [stderr] -- Building CUDA library: OFF [INFO] [stderr] -- Using OpenMP support: ON [INFO] [stderr] -- Using MPI support: OFF [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/rustwide/target/debug/build/flann-sys-f41460c4dff8bf4f/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] CMake Warning at CMakeLists.txt:78 (message): [INFO] [stderr] hdf5 library not found, some tests will not be run [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Warning at CMakeLists.txt:117 (message): [INFO] [stderr] gtest library not found, some tests will not be run [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Error: Could not open file for write in copy operation /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/flann-sys-0.1.0/flann/src/cpp/flann/config.h.tmp [INFO] [stderr] CMake Error: : System Error: Read-only file system [INFO] [stderr] CMake Error at src/cpp/CMakeLists.txt:5 (configure_file): [INFO] [stderr] configure_file Problem configuring file [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit code: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.45/src/lib.rs:894:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x559964a5a8d7 - std::backtrace_rs::backtrace::libunwind::trace::h8bc78f7bc1f75bdb [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x559964a5a8d7 - std::backtrace_rs::backtrace::trace_unsynchronized::ha4c961c9576f95ba [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x559964a5a8d7 - std::sys_common::backtrace::_print_fmt::hc20cfdc233d6eb02 [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x559964a5a8d7 - ::fmt::h04bea14549780a0f [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x559964a7e22c - core::fmt::write::h3868db8542c90941 [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/core/src/fmt/mod.rs:1096:17 [INFO] [stderr] 5: 0x559964a56482 - std::io::Write::write_fmt::h55dd75636eef6a5c [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/io/mod.rs:1568:15 [INFO] [stderr] 6: 0x559964a5d0a5 - std::sys_common::backtrace::_print::h6439e8525077c7da [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x559964a5d0a5 - std::sys_common::backtrace::print::h02b685f728ce3931 [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x559964a5d0a5 - std::panicking::default_hook::{{closure}}::h7c29625065fafae1 [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x559964a5cc03 - std::panicking::default_hook::hba441710bb71f4d5 [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x559964a5d841 - std::panicking::rust_panic_with_hook::ha936eb00e51bc4d9 [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x559964a5d387 - std::panicking::begin_panic_handler::{{closure}}::hcd15140e0238536e [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/panicking.rs:497:13 [INFO] [stderr] 12: 0x559964a5ad9c - std::sys_common::backtrace::__rust_end_short_backtrace::hb13a021bb64823a1 [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x559964a5d2e9 - rust_begin_unwind [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/panicking.rs:493:5 [INFO] [stderr] 14: 0x559964a5d29b - std::panicking::begin_panic_fmt::h3ef6798fa589483b [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/panicking.rs:435:5 [INFO] [stderr] 15: 0x55996451d594 - cmake::fail::h32a8f332656b89e4 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.45/src/lib.rs:894:5 [INFO] [stderr] 16: 0x55996451cefb - cmake::run::hec28e131124cf90d [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.45/src/lib.rs:872:9 [INFO] [stderr] 17: 0x559964518f98 - cmake::Config::build::hdf2a632089427975 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.45/src/lib.rs:707:13 [INFO] [stderr] 18: 0x5599645133ec - build_script_build::main::haecada36ff49d472 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/flann-sys-0.1.0/build.rs:30:19 [INFO] [stderr] 19: 0x559964513ecb - core::ops::function::FnOnce::call_once::h56c1f21d9990ac15 [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 20: 0x559964513d0e - std::sys_common::backtrace::__rust_begin_short_backtrace::h641d9d71f8e1427a [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 21: 0x559964515a51 - std::rt::lang_start::{{closure}}::he8ba96577036f4ef [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/rt.rs:66:18 [INFO] [stderr] 22: 0x559964a5dc67 - core::ops::function::impls:: for &F>::call_once::h7c92107c3c98a949 [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 23: 0x559964a5dc67 - std::panicking::try::do_call::h7454c57e8fbf0cc1 [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/panicking.rs:379:40 [INFO] [stderr] 24: 0x559964a5dc67 - std::panicking::try::he71cdc15ed83b5ec [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/panicking.rs:343:19 [INFO] [stderr] 25: 0x559964a5dc67 - std::panic::catch_unwind::hfc08ddb043e6e18c [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/panic.rs:396:14 [INFO] [stderr] 26: 0x559964a5dc67 - std::rt::lang_start_internal::he4958117ec6901fd [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/rt.rs:51:25 [INFO] [stderr] 27: 0x559964515a27 - std::rt::lang_start::h8053fe9618fdf537 [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/rt.rs:65:5 [INFO] [stderr] 28: 0x55996451383a - main [INFO] [stderr] 29: 0x7f31c0b5d0b3 - __libc_start_main [INFO] [stderr] 30: 0x5599645130ce - _start [INFO] [stderr] 31: 0x0 - [INFO] running `Command { std: "docker" "inspect" "2560e9f240e79c5cd2d9f09c806bb772d294d5082e26dc0f309090858e3af837", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2560e9f240e79c5cd2d9f09c806bb772d294d5082e26dc0f309090858e3af837", kill_on_drop: false }` [INFO] [stdout] 2560e9f240e79c5cd2d9f09c806bb772d294d5082e26dc0f309090858e3af837