[INFO] fetching crate d4-hts 0.1.16... [INFO] checking d4-hts-0.1.16 against master#4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5 for pr-81174 [INFO] extracting crate d4-hts 0.1.16 into /workspace/builds/worker-1/source [INFO] validating manifest of crates.io crate d4-hts 0.1.16 on toolchain 4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate d4-hts 0.1.16 [INFO] finished tweaking crates.io crate d4-hts 0.1.16 [INFO] tweaked toml for crates.io crate d4-hts 0.1.16 written to /workspace/builds/worker-1/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:21f1ed92105a0ef9b0d27ad8bdeb7f36f9f01ac17fffe3a3f3dc5241fc25d8f4" "/opt/rustwide/cargo-home/bin/cargo" "+4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] f4ca3181d3ec8be7810d2a9dac1c72070d0d9c22e5e67f46820a454d1799e270 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "f4ca3181d3ec8be7810d2a9dac1c72070d0d9c22e5e67f46820a454d1799e270", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "f4ca3181d3ec8be7810d2a9dac1c72070d0d9c22e5e67f46820a454d1799e270", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f4ca3181d3ec8be7810d2a9dac1c72070d0d9c22e5e67f46820a454d1799e270", kill_on_drop: false }` [INFO] [stdout] f4ca3181d3ec8be7810d2a9dac1c72070d0d9c22e5e67f46820a454d1799e270 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:21f1ed92105a0ef9b0d27ad8bdeb7f36f9f01ac17fffe3a3f3dc5241fc25d8f4" "/opt/rustwide/cargo-home/bin/cargo" "+4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 2789c7834eee332c95ac4987acfdecd2c12c65683ee33751d7a0366817deabcf [INFO] running `Command { std: "docker" "start" "-a" "2789c7834eee332c95ac4987acfdecd2c12c65683ee33751d7a0366817deabcf", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling version_check v0.9.2 [INFO] [stderr] Compiling once_cell v1.5.2 [INFO] [stderr] Compiling proc-macro2 v1.0.24 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling regex-syntax v0.6.22 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling termcolor v1.1.2 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling libloading v0.6.7 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Compiling libc v0.2.82 [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling log v0.4.13 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling thread_local v1.1.2 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling aho-corasick v0.7.15 [INFO] [stderr] Compiling clang-sys v1.0.3 [INFO] [stderr] Compiling quote v1.0.8 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling regex v1.4.3 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling d4-hts v0.1.16 (/opt/rustwide/workdir) [INFO] [stderr] error: failed to run custom build command for `d4-hts v0.1.16 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/d4-hts-aa5b3e3727b7fa25/build-script-build` (exit code: 101) [INFO] [stderr] --- stderr [INFO] [stderr] + pushd /opt/rustwide/target/debug/build/d4-hts-0da7375ce2911b81/out [INFO] [stderr] + HTSLIB_VERSION=1.11 [INFO] [stderr] + rm -rf /opt/rustwide/target/debug/build/d4-hts-0da7375ce2911b81/out/htslib [INFO] [stderr] + git clone -b 1.11 https://github.com/samtools/htslib.git [INFO] [stderr] Cloning into 'htslib'... [INFO] [stderr] fatal: unable to access 'https://github.com/samtools/htslib.git/': Could not resolve host: github.com [INFO] [stderr] thread 'main' panicked at 'assertion failed: Command::new(\"bash\").args(&[\"build_htslib.sh\",\n &version]).stdout(std::process::Stdio::null()).spawn().expect(\"Unable to build htslib\").wait().unwrap().success()', build.rs:34:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5641eb80a8c7 - std::backtrace_rs::backtrace::libunwind::trace::h8bc78f7bc1f75bdb [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x5641eb80a8c7 - std::backtrace_rs::backtrace::trace_unsynchronized::ha4c961c9576f95ba [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x5641eb80a8c7 - std::sys_common::backtrace::_print_fmt::hc20cfdc233d6eb02 [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x5641eb80a8c7 - ::fmt::h04bea14549780a0f [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x5641eb82d1cc - core::fmt::write::h3868db8542c90941 [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/core/src/fmt/mod.rs:1096:17 [INFO] [stderr] 5: 0x5641eb806b12 - std::io::Write::write_fmt::h55dd75636eef6a5c [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/io/mod.rs:1568:15 [INFO] [stderr] 6: 0x5641eb80cb35 - std::sys_common::backtrace::_print::h6439e8525077c7da [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x5641eb80cb35 - std::sys_common::backtrace::print::h02b685f728ce3931 [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x5641eb80cb35 - std::panicking::default_hook::{{closure}}::h7c29625065fafae1 [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x5641eb80c693 - std::panicking::default_hook::hba441710bb71f4d5 [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x5641eb80d2d1 - std::panicking::rust_panic_with_hook::ha936eb00e51bc4d9 [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x5641eb80cde7 - std::panicking::begin_panic_handler::{{closure}}::hcd15140e0238536e [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/panicking.rs:495:13 [INFO] [stderr] 12: 0x5641eb80ad8c - std::sys_common::backtrace::__rust_end_short_backtrace::hb13a021bb64823a1 [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x5641eb80cd79 - rust_begin_unwind [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/panicking.rs:493:5 [INFO] [stderr] 14: 0x5641eb82b8b1 - core::panicking::panic_fmt::h20225113c4a2f8fd [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/core/src/panicking.rs:92:14 [INFO] [stderr] 15: 0x5641eb82b7fd - core::panicking::panic::h35b77276aa4b0c12 [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/core/src/panicking.rs:50:5 [INFO] [stderr] 16: 0x5641eb26f9ad - build_script_build::build_own_htslib::h947f91dc485ece55 [INFO] [stderr] at /opt/rustwide/workdir/build.rs:34:5 [INFO] [stderr] 17: 0x5641eb26fee4 - build_script_build::main::heb4c419228ea2d56 [INFO] [stderr] at /opt/rustwide/workdir/build.rs:66:9 [INFO] [stderr] 18: 0x5641eb2715bb - core::ops::function::FnOnce::call_once::h3aff610ba947463e [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 19: 0x5641eb270fee - std::sys_common::backtrace::__rust_begin_short_backtrace::hf499fc79e788df2a [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 20: 0x5641eb2714e1 - std::rt::lang_start::{{closure}}::h47c72e076b8b114e [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/rt.rs:66:18 [INFO] [stderr] 21: 0x5641eb80d6f7 - core::ops::function::impls:: for &F>::call_once::h7c92107c3c98a949 [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 22: 0x5641eb80d6f7 - std::panicking::try::do_call::h7454c57e8fbf0cc1 [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/panicking.rs:379:40 [INFO] [stderr] 23: 0x5641eb80d6f7 - std::panicking::try::he71cdc15ed83b5ec [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/panicking.rs:343:19 [INFO] [stderr] 24: 0x5641eb80d6f7 - std::panic::catch_unwind::hfc08ddb043e6e18c [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/panic.rs:396:14 [INFO] [stderr] 25: 0x5641eb80d6f7 - std::rt::lang_start_internal::he4958117ec6901fd [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/rt.rs:51:25 [INFO] [stderr] 26: 0x5641eb2714b7 - std::rt::lang_start::hb8aa843c9fe85376 [INFO] [stderr] at /rustc/4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5/library/std/src/rt.rs:65:5 [INFO] [stderr] 27: 0x5641eb27062a - main [INFO] [stderr] 28: 0x7f8d0bf390b3 - __libc_start_main [INFO] [stderr] 29: 0x5641eb26f0be - _start [INFO] [stderr] 30: 0x0 - [INFO] running `Command { std: "docker" "inspect" "2789c7834eee332c95ac4987acfdecd2c12c65683ee33751d7a0366817deabcf", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2789c7834eee332c95ac4987acfdecd2c12c65683ee33751d7a0366817deabcf", kill_on_drop: false }` [INFO] [stdout] 2789c7834eee332c95ac4987acfdecd2c12c65683ee33751d7a0366817deabcf