[INFO] cloning repository https://github.com/sholderbach/rust-read-filter [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/sholderbach/rust-read-filter" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsholderbach%2Frust-read-filter", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsholderbach%2Frust-read-filter'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 27db2e87bc449570a740aacf0ae92ffc3e642968 [INFO] checking sholderbach/rust-read-filter against master#4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5 for pr-81174 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsholderbach%2Frust-read-filter" "/workspace/builds/worker-1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/sholderbach/rust-read-filter on toolchain 4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/sholderbach/rust-read-filter [INFO] finished tweaking git repo https://github.com/sholderbach/rust-read-filter [INFO] tweaked toml for git repo https://github.com/sholderbach/rust-read-filter written to /workspace/builds/worker-1/source/Cargo.toml [INFO] crate git repo https://github.com/sholderbach/rust-read-filter already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:21f1ed92105a0ef9b0d27ad8bdeb7f36f9f01ac17fffe3a3f3dc5241fc25d8f4" "/opt/rustwide/cargo-home/bin/cargo" "+4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 9fc63229c2731ba98af9d9e4ea515dce94d174105e349c80e88aad6e0f364ec0 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "9fc63229c2731ba98af9d9e4ea515dce94d174105e349c80e88aad6e0f364ec0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "9fc63229c2731ba98af9d9e4ea515dce94d174105e349c80e88aad6e0f364ec0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9fc63229c2731ba98af9d9e4ea515dce94d174105e349c80e88aad6e0f364ec0", kill_on_drop: false }` [INFO] [stdout] 9fc63229c2731ba98af9d9e4ea515dce94d174105e349c80e88aad6e0f364ec0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:21f1ed92105a0ef9b0d27ad8bdeb7f36f9f01ac17fffe3a3f3dc5241fc25d8f4" "/opt/rustwide/cargo-home/bin/cargo" "+4d0dd02ee07bddad9136f95c9f7846ebf3eb3fc5" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 893cb7d33c900b548c439120d826c4327d4a4c1e9fece4217aa6a8e400bdb8ef [INFO] running `Command { std: "docker" "start" "-a" "893cb7d33c900b548c439120d826c4327d4a4c1e9fece4217aa6a8e400bdb8ef", kill_on_drop: false }` [INFO] [stderr] Compiling syn v1.0.57 [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Compiling getrandom v0.1.16 [INFO] [stderr] Checking regex-syntax v0.6.21 [INFO] [stderr] Checking ppv-lite86 v0.2.10 [INFO] [stderr] Compiling ryu v1.0.5 [INFO] [stderr] Compiling doc-comment v0.3.3 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Checking hashbrown v0.9.1 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Compiling bio v0.32.0 [INFO] [stderr] Checking fixedbitset v0.2.0 [INFO] [stderr] Checking array-macro v1.0.5 [INFO] [stderr] Checking bit-vec v0.6.3 [INFO] [stderr] Checking strum v0.18.0 [INFO] [stderr] Checking strsim v0.8.0 [INFO] [stderr] Checking triple_accel v0.3.4 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking bytecount v0.6.2 [INFO] [stderr] Checking predicates-core v1.0.1 [INFO] [stderr] Checking ansi_term v0.11.0 [INFO] [stderr] Checking treeline v0.1.0 [INFO] [stderr] Checking normalize-line-endings v0.3.0 [INFO] [stderr] Checking difference v2.0.0 [INFO] [stderr] Checking cfg-if v0.1.10 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling indexmap v1.6.1 [INFO] [stderr] Compiling lzma-sys v0.1.17 [INFO] [stderr] Compiling bzip2-sys v0.1.9+1.0.8 [INFO] [stderr] Compiling crc32fast v1.2.1 [INFO] [stderr] Checking addr2line v0.14.1 [INFO] [stderr] Compiling heck v0.3.2 [INFO] [stderr] Checking matrixmultiply v0.2.4 [INFO] [stderr] Checking thread_local v1.0.1 [INFO] [stderr] Checking bit-set v0.5.2 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Checking predicates-tree v1.0.1 [INFO] [stderr] Compiling miniz_oxide v0.4.3 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling quote v1.0.8 [INFO] [stderr] Checking wait-timeout v0.2.0 [INFO] [stderr] Checking regex-automata v0.1.9 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking aho-corasick v0.7.15 [INFO] [stderr] Checking csv-core v0.1.10 [INFO] [stderr] Checking xz2 v0.1.6 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking backtrace v0.3.55 [INFO] [stderr] Checking flate2 v1.0.19 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking petgraph v0.5.1 [INFO] [stderr] Checking bzip2 v0.4.1 [INFO] [stderr] Checking num-traits v0.1.43 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking ordered-float v1.1.1 [INFO] [stderr] Checking approx v0.3.2 [INFO] [stderr] Checking counter v0.5.2 [INFO] [stderr] Checking float-cmp v0.8.0 [INFO] [stderr] Checking enum_primitive v0.1.1 [INFO] [stderr] Checking statrs v0.12.0 [INFO] [stderr] Checking tempfile v3.1.0 [INFO] [stderr] Checking regex v1.4.2 [INFO] [stderr] Checking predicates v1.0.6 [INFO] [stderr] Checking assert_cmd v1.0.2 [INFO] [stderr] Compiling synstructure v0.12.4 [INFO] [stderr] Compiling serde_derive v1.0.118 [INFO] [stderr] Compiling failure_derive v0.1.8 [INFO] [stderr] Compiling snafu-derive v0.6.10 [INFO] [stderr] Compiling thiserror-impl v1.0.23 [INFO] [stderr] Compiling derive-new v0.5.8 [INFO] [stderr] Compiling enum-map-derive v0.4.6 [INFO] [stderr] Compiling strum_macros v0.18.0 [INFO] [stderr] Compiling getset v0.0.9 [INFO] [stderr] Checking enum-map v0.6.4 [INFO] [stderr] Checking failure v0.1.8 [INFO] [stderr] Checking bgzip v0.1.0 [INFO] [stderr] Checking thiserror v1.0.23 [INFO] [stderr] Checking niffler v2.3.1 [INFO] [stderr] Checking snafu v0.6.10 [INFO] [stderr] Checking serde v1.0.118 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking bstr v0.2.14 [INFO] [stderr] Checking bio-types v0.7.0 [INFO] [stderr] Checking multimap v0.8.2 [INFO] [stderr] Checking serde_json v1.0.61 [INFO] [stderr] Checking clap v2.33.3 [INFO] [stderr] Checking csv v1.1.5 [INFO] [stderr] Checking read_filter v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: associated function is never used: `peak_qual` [INFO] [stdout] --> src/main.rs:71:8 [INFO] [stdout] | [INFO] [stdout] 71 | fn peak_qual(&self) -> u8 { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `mean_qual` [INFO] [stdout] --> src/main.rs:78:8 [INFO] [stdout] | [INFO] [stdout] 78 | fn mean_qual(&self) -> u8 { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `to_fastq` [INFO] [stdout] --> src/main.rs:84:8 [INFO] [stdout] | [INFO] [stdout] 84 | fn to_fastq(&self, id: &str) -> fastq::Record { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `to_fastq_original_strand` [INFO] [stdout] --> src/main.rs:89:8 [INFO] [stdout] | [INFO] [stdout] 89 | fn to_fastq_original_strand(&self, id: &str) -> fastq::Record { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 4 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `peak_qual` [INFO] [stdout] --> src/main.rs:71:8 [INFO] [stdout] | [INFO] [stdout] 71 | fn peak_qual(&self) -> u8 { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `mean_qual` [INFO] [stdout] --> src/main.rs:78:8 [INFO] [stdout] | [INFO] [stdout] 78 | fn mean_qual(&self) -> u8 { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `to_fastq` [INFO] [stdout] --> src/main.rs:84:8 [INFO] [stdout] | [INFO] [stdout] 84 | fn to_fastq(&self, id: &str) -> fastq::Record { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `to_fastq_original_strand` [INFO] [stdout] --> src/main.rs:89:8 [INFO] [stdout] | [INFO] [stdout] 89 | fn to_fastq_original_strand(&self, id: &str) -> fastq::Record { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 4 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 26s [INFO] running `Command { std: "docker" "inspect" "893cb7d33c900b548c439120d826c4327d4a4c1e9fece4217aa6a8e400bdb8ef", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "893cb7d33c900b548c439120d826c4327d4a4c1e9fece4217aa6a8e400bdb8ef", kill_on_drop: false }` [INFO] [stdout] 893cb7d33c900b548c439120d826c4327d4a4c1e9fece4217aa6a8e400bdb8ef