[INFO] cloning repository https://github.com/Axect/Galmorph [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Axect/Galmorph" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAxect%2FGalmorph", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAxect%2FGalmorph'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 21de14073b013984b7f1daaaffb0d32e045eddb8 [INFO] checking Axect/Galmorph against try#bb9dbf1d07454a99066eabaabd5819851281494b for pr-80920 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAxect%2FGalmorph" "/workspace/builds/worker-3/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-3/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/Axect/Galmorph on toolchain bb9dbf1d07454a99066eabaabd5819851281494b [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+bb9dbf1d07454a99066eabaabd5819851281494b" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/Axect/Galmorph [INFO] finished tweaking git repo https://github.com/Axect/Galmorph [INFO] tweaked toml for git repo https://github.com/Axect/Galmorph written to /workspace/builds/worker-3/source/Cargo.toml [INFO] crate git repo https://github.com/Axect/Galmorph already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+bb9dbf1d07454a99066eabaabd5819851281494b" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded libloading v0.6.4 [INFO] [stderr] Downloaded fitsio v0.16.0 [INFO] [stderr] Downloaded netcdf-sys v0.3.2 [INFO] [stderr] Downloaded peroxide v0.27.0 [INFO] [stderr] Downloaded netcdf v0.5.1 [INFO] [stderr] Downloaded puruda-macro v0.1.1 [INFO] [stderr] Downloaded fitsio-sys v0.3.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:21f1ed92105a0ef9b0d27ad8bdeb7f36f9f01ac17fffe3a3f3dc5241fc25d8f4" "/opt/rustwide/cargo-home/bin/cargo" "+bb9dbf1d07454a99066eabaabd5819851281494b" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 6c0bfc59fb868ebca4d6a8fe9ed4d621e6cdbbc90462b7033de63c9c64685664 [INFO] running `Command { std: "docker" "start" "-a" "6c0bfc59fb868ebca4d6a8fe9ed4d621e6cdbbc90462b7033de63c9c64685664", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "6c0bfc59fb868ebca4d6a8fe9ed4d621e6cdbbc90462b7033de63c9c64685664", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6c0bfc59fb868ebca4d6a8fe9ed4d621e6cdbbc90462b7033de63c9c64685664", kill_on_drop: false }` [INFO] [stdout] 6c0bfc59fb868ebca4d6a8fe9ed4d621e6cdbbc90462b7033de63c9c64685664 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:21f1ed92105a0ef9b0d27ad8bdeb7f36f9f01ac17fffe3a3f3dc5241fc25d8f4" "/opt/rustwide/cargo-home/bin/cargo" "+bb9dbf1d07454a99066eabaabd5819851281494b" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 8d3921d4fd200f3f24240a26910a5f80e040dc249f6ba90157f4844dbaceff37 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "8d3921d4fd200f3f24240a26910a5f80e040dc249f6ba90157f4844dbaceff37", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.79 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling pkg-config v0.3.18 [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling regex-syntax v0.6.19 [INFO] [stderr] Compiling libm v0.2.1 [INFO] [stderr] Compiling getrandom v0.1.15 [INFO] [stderr] Compiling cc v1.0.61 [INFO] [stderr] Checking cfg-if v0.1.10 [INFO] [stderr] Compiling serde v1.0.116 [INFO] [stderr] Compiling ryu v1.0.5 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Checking ppv-lite86 v0.2.9 [INFO] [stderr] Compiling netcdf-sys v0.3.2 [INFO] [stderr] Checking itoa v0.4.6 [INFO] [stderr] Checking hashbrown v0.9.1 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling peroxide v0.27.0 [INFO] [stderr] Checking puruspe v0.1.4 [INFO] [stderr] Compiling puruda-macro v0.1.1 [INFO] [stderr] Checking order-stat v0.1.3 [INFO] [stderr] Compiling peroxide-ad v0.1.4 [INFO] [stderr] Checking json v0.12.4 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling libloading v0.6.4 [INFO] [stderr] Checking matrixmultiply v0.2.3 [INFO] [stderr] Checking regex-automata v0.1.9 [INFO] [stderr] Checking csv-core v0.1.10 [INFO] [stderr] Compiling aho-corasick v0.7.13 [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling indexmap v1.6.0 [INFO] [stderr] Compiling fitsio-sys v0.3.0 [INFO] [stderr] Compiling libz-sys v1.1.2 [INFO] [stderr] Checking lapack-sys v0.12.1 [INFO] [stderr] Checking blas-sys v0.7.1 [INFO] [stderr] Checking fitsio v0.16.0 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Compiling regex v1.4.0 [INFO] [stderr] Checking lapack v0.16.0 [INFO] [stderr] Checking blas v0.20.0 [INFO] [stderr] Checking rand_distr v0.3.0 [INFO] [stderr] Checking bstr v0.2.13 [INFO] [stderr] Checking csv v1.1.3 [INFO] [stderr] Compiling hdf5-sys v0.7.0 [INFO] [stderr] Checking puruda v0.1.0 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-21a7d38286e1802f/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x564fe1f51007 - std::backtrace_rs::backtrace::libunwind::trace::h8bc78f7bc1f75bdb [INFO] [stderr] at /rustc/bb9dbf1d07454a99066eabaabd5819851281494b/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x564fe1f51007 - std::backtrace_rs::backtrace::trace_unsynchronized::ha4c961c9576f95ba [INFO] [stderr] at /rustc/bb9dbf1d07454a99066eabaabd5819851281494b/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x564fe1f51007 - std::sys_common::backtrace::_print_fmt::hc20cfdc233d6eb02 [INFO] [stderr] at /rustc/bb9dbf1d07454a99066eabaabd5819851281494b/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x564fe1f51007 - ::fmt::h04bea14549780a0f [INFO] [stderr] at /rustc/bb9dbf1d07454a99066eabaabd5819851281494b/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x564fe1f6d07c - core::fmt::write::h3868db8542c90941 [INFO] [stderr] at /rustc/bb9dbf1d07454a99066eabaabd5819851281494b/library/core/src/fmt/mod.rs:1078:17 [INFO] [stderr] 5: 0x564fe1f4d9f2 - std::io::Write::write_fmt::h55dd75636eef6a5c [INFO] [stderr] at /rustc/bb9dbf1d07454a99066eabaabd5819851281494b/library/std/src/io/mod.rs:1518:15 [INFO] [stderr] 6: 0x564fe1f53095 - std::sys_common::backtrace::_print::h6439e8525077c7da [INFO] [stderr] at /rustc/bb9dbf1d07454a99066eabaabd5819851281494b/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x564fe1f53095 - std::sys_common::backtrace::print::h02b685f728ce3931 [INFO] [stderr] at /rustc/bb9dbf1d07454a99066eabaabd5819851281494b/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x564fe1f53095 - std::panicking::default_hook::{{closure}}::h7c29625065fafae1 [INFO] [stderr] at /rustc/bb9dbf1d07454a99066eabaabd5819851281494b/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x564fe1f52bf3 - std::panicking::default_hook::hba441710bb71f4d5 [INFO] [stderr] at /rustc/bb9dbf1d07454a99066eabaabd5819851281494b/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x564fe1f53831 - std::panicking::rust_panic_with_hook::ha936eb00e51bc4d9 [INFO] [stderr] at /rustc/bb9dbf1d07454a99066eabaabd5819851281494b/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x564fe1ea589e - std::panicking::begin_panic::{{closure}}::h5c26304e42cb3f86 [INFO] [stderr] at /rustc/bb9dbf1d07454a99066eabaabd5819851281494b/library/std/src/panicking.rs:520:9 [INFO] [stderr] 12: 0x564fe1e69d69 - std::sys_common::backtrace::__rust_end_short_backtrace::h14045f95ac9306a2 [INFO] [stderr] at /rustc/bb9dbf1d07454a99066eabaabd5819851281494b/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x564fe1ea57cb - std::panicking::begin_panic::h6ee600b83673b4a7 [INFO] [stderr] at /rustc/bb9dbf1d07454a99066eabaabd5819851281494b/library/std/src/panicking.rs:519:12 [INFO] [stderr] 14: 0x564fe1d4d17b - build_script_build::LibrarySearcher::try_locate_hdf5_library::hcc76b9dd8b5219bc [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] 15: 0x564fe1d4ea53 - build_script_build::main::h79795d67c7ec999e [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647:9 [INFO] [stderr] 16: 0x564fe1d5185b - core::ops::function::FnOnce::call_once::h208dd2a4f20c6e11 [INFO] [stderr] at /rustc/bb9dbf1d07454a99066eabaabd5819851281494b/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x564fe1d512de - std::sys_common::backtrace::__rust_begin_short_backtrace::h47d9f47b5d09c847 [INFO] [stderr] at /rustc/bb9dbf1d07454a99066eabaabd5819851281494b/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x564fe1d59871 - std::rt::lang_start::{{closure}}::h731543875ec76a3d [INFO] [stderr] at /rustc/bb9dbf1d07454a99066eabaabd5819851281494b/library/std/src/rt.rs:66:18 [INFO] [stderr] 19: 0x564fe1f53c57 - core::ops::function::impls:: for &F>::call_once::h7c92107c3c98a949 [INFO] [stderr] at /rustc/bb9dbf1d07454a99066eabaabd5819851281494b/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x564fe1f53c57 - std::panicking::try::do_call::h7454c57e8fbf0cc1 [INFO] [stderr] at /rustc/bb9dbf1d07454a99066eabaabd5819851281494b/library/std/src/panicking.rs:379:40 [INFO] [stderr] 21: 0x564fe1f53c57 - std::panicking::try::he71cdc15ed83b5ec [INFO] [stderr] at /rustc/bb9dbf1d07454a99066eabaabd5819851281494b/library/std/src/panicking.rs:343:19 [INFO] [stderr] 22: 0x564fe1f53c57 - std::panic::catch_unwind::hfc08ddb043e6e18c [INFO] [stderr] at /rustc/bb9dbf1d07454a99066eabaabd5819851281494b/library/std/src/panic.rs:396:14 [INFO] [stderr] 23: 0x564fe1f53c57 - std::rt::lang_start_internal::he4958117ec6901fd [INFO] [stderr] at /rustc/bb9dbf1d07454a99066eabaabd5819851281494b/library/std/src/rt.rs:51:25 [INFO] [stderr] 24: 0x564fe1d59847 - std::rt::lang_start::h126e1830cf8463e8 [INFO] [stderr] at /rustc/bb9dbf1d07454a99066eabaabd5819851281494b/library/std/src/rt.rs:65:5 [INFO] [stderr] 25: 0x564fe1d5009a - main [INFO] [stderr] 26: 0x7f9be43510b3 - __libc_start_main [INFO] [stderr] 27: 0x564fe1d480be - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "8d3921d4fd200f3f24240a26910a5f80e040dc249f6ba90157f4844dbaceff37", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8d3921d4fd200f3f24240a26910a5f80e040dc249f6ba90157f4844dbaceff37", kill_on_drop: false }` [INFO] [stdout] 8d3921d4fd200f3f24240a26910a5f80e040dc249f6ba90157f4844dbaceff37