[INFO] fetching crate libhdf5-sys 0.2.0... [INFO] checking libhdf5-sys-0.2.0 against master#a609fb45efad59dfd459c76e50899be9f0583b5a for pr-80579 [INFO] extracting crate libhdf5-sys 0.2.0 into /workspace/builds/worker-2/source [INFO] validating manifest of crates.io crate libhdf5-sys 0.2.0 on toolchain a609fb45efad59dfd459c76e50899be9f0583b5a [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a609fb45efad59dfd459c76e50899be9f0583b5a" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate libhdf5-sys 0.2.0 [INFO] removed path dependency libhdf5-lib from crates.io crate libhdf5-sys 0.2.0 [INFO] removed path dependency libhdf5-lib from crates.io crate libhdf5-sys 0.2.0 [INFO] finished tweaking crates.io crate libhdf5-sys 0.2.0 [INFO] tweaked toml for crates.io crate libhdf5-sys 0.2.0 written to /workspace/builds/worker-2/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a609fb45efad59dfd459c76e50899be9f0583b5a" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a609fb45efad59dfd459c76e50899be9f0583b5a" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+a609fb45efad59dfd459c76e50899be9f0583b5a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 89e2fea9c76d84e842a0e91b724ea2d94b5609e6c1275b163cc124e1af164166 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "89e2fea9c76d84e842a0e91b724ea2d94b5609e6c1275b163cc124e1af164166", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "89e2fea9c76d84e842a0e91b724ea2d94b5609e6c1275b163cc124e1af164166", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "89e2fea9c76d84e842a0e91b724ea2d94b5609e6c1275b163cc124e1af164166", kill_on_drop: false }` [INFO] [stdout] 89e2fea9c76d84e842a0e91b724ea2d94b5609e6c1275b163cc124e1af164166 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+a609fb45efad59dfd459c76e50899be9f0583b5a" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 9ed9f3aa9c8b79b4e9d87e09a530de7e35c22f76a38d04bcaf474d7474c3adb7 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "9ed9f3aa9c8b79b4e9d87e09a530de7e35c22f76a38d04bcaf474d7474c3adb7", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.81 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling libhdf5-lib v0.2.0 [INFO] [stderr] Compiling libhdf5-sys v0.2.0 (/opt/rustwide/workdir) [INFO] [stdout] error: linking with `cc` failed: exit code: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-Wl,--as-needed" "-Wl,-z,noexecstack" "-m64" "-Wl,--eh-frame-hdr" "-L" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib" "/opt/rustwide/target/debug/build/libhdf5-sys-af96fe437149fc84/build_script_build-af96fe437149fc84.build_script_build.8xj027bm-cgu.0.rcgu.o" "/opt/rustwide/target/debug/build/libhdf5-sys-af96fe437149fc84/build_script_build-af96fe437149fc84.build_script_build.8xj027bm-cgu.1.rcgu.o" "/opt/rustwide/target/debug/build/libhdf5-sys-af96fe437149fc84/build_script_build-af96fe437149fc84.build_script_build.8xj027bm-cgu.2.rcgu.o" "/opt/rustwide/target/debug/build/libhdf5-sys-af96fe437149fc84/build_script_build-af96fe437149fc84.build_script_build.8xj027bm-cgu.3.rcgu.o" "/opt/rustwide/target/debug/build/libhdf5-sys-af96fe437149fc84/build_script_build-af96fe437149fc84.build_script_build.8xj027bm-cgu.4.rcgu.o" "/opt/rustwide/target/debug/build/libhdf5-sys-af96fe437149fc84/build_script_build-af96fe437149fc84.build_script_build.8xj027bm-cgu.5.rcgu.o" "/opt/rustwide/target/debug/build/libhdf5-sys-af96fe437149fc84/build_script_build-af96fe437149fc84.build_script_build.8xj027bm-cgu.6.rcgu.o" "-o" "/opt/rustwide/target/debug/build/libhdf5-sys-af96fe437149fc84/build_script_build-af96fe437149fc84" "/opt/rustwide/target/debug/build/libhdf5-sys-af96fe437149fc84/build_script_build-af96fe437149fc84.3flroy13f5ef46zo.rcgu.o" "-Wl,--gc-sections" "-pie" "-Wl,-zrelro" "-Wl,-znow" "-nodefaultlibs" "-L" "/opt/rustwide/target/debug/deps" "-L" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/liblibhdf5_lib-52e86832f616e9be.rlib" "-Wl,--start-group" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd-25c6acf8063a3802.rlib" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/libpanic_unwind-539f13c9442f1597.rlib" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/libminiz_oxide-37db28e905edb56b.rlib" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/libadler-9ef2480568df55af.rlib" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/libobject-1e0f0992cdbecd66.rlib" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/libaddr2line-6c8e02b8fedc1e5f.rlib" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/libgimli-807e5ad203594490.rlib" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_demangle-083fce1bea11612a.rlib" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/libhashbrown-1af568081add9042.rlib" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_alloc-1395b54a3b3f45bf.rlib" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/libunwind-caba820045f178d5.rlib" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcfg_if-512eb53291f6de7e.rlib" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/liblibc-5efacc5025f9f3d8.rlib" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/liballoc-9c4002b5f79ba0e1.rlib" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_core-90996f4879673567.rlib" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcore-9ea09a899c3eda46.rlib" "-Wl,--end-group" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcompiler_builtins-ef2408da76957905.rlib" "-Wl,-Bdynamic" "-lhdf5" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" [INFO] [stdout] = note: /usr/bin/ld: cannot find -lhdf5 [INFO] [stdout] collect2: error: ld returned 1 exit status [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to previous error [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `libhdf5-sys` [INFO] [stderr] [INFO] [stderr] To learn more, run the command again with --verbose. [INFO] running `Command { std: "docker" "inspect" "9ed9f3aa9c8b79b4e9d87e09a530de7e35c22f76a38d04bcaf474d7474c3adb7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9ed9f3aa9c8b79b4e9d87e09a530de7e35c22f76a38d04bcaf474d7474c3adb7", kill_on_drop: false }` [INFO] [stdout] 9ed9f3aa9c8b79b4e9d87e09a530de7e35c22f76a38d04bcaf474d7474c3adb7