[INFO] fetching crate hdf5-rs 0.2.0...
[INFO] checking hdf5-rs-0.2.0 against master#a609fb45efad59dfd459c76e50899be9f0583b5a for pr-80579
[INFO] extracting crate hdf5-rs 0.2.0 into /workspace/builds/worker-3/source
[INFO] validating manifest of crates.io crate hdf5-rs 0.2.0 on toolchain a609fb45efad59dfd459c76e50899be9f0583b5a
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a609fb45efad59dfd459c76e50899be9f0583b5a" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking crates.io crate hdf5-rs 0.2.0
[INFO] removed path dependency libhdf5-lib from crates.io crate hdf5-rs 0.2.0
[INFO] removed path dependency libhdf5-sys from crates.io crate hdf5-rs 0.2.0
[INFO] removed path dependency remutex from crates.io crate hdf5-rs 0.2.0
[INFO] removed path dependency libhdf5-lib from crates.io crate hdf5-rs 0.2.0
[INFO] finished tweaking crates.io crate hdf5-rs 0.2.0
[INFO] tweaked toml for crates.io crate hdf5-rs 0.2.0 written to /workspace/builds/worker-3/source/Cargo.toml
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a609fb45efad59dfd459c76e50899be9f0583b5a" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a609fb45efad59dfd459c76e50899be9f0583b5a" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded remutex v0.1.1
[INFO] [stderr]   Downloaded libhdf5-lib v0.2.0
[INFO] [stderr]   Downloaded libhdf5-sys v0.2.0
[INFO] [stderr]   Downloaded clippy v0.0.63
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+a609fb45efad59dfd459c76e50899be9f0583b5a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 5a7691966f6878645c09fbdc29d3e1a507ce4f86ecb4e025fc8a1b52ea8dd87d
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "5a7691966f6878645c09fbdc29d3e1a507ce4f86ecb4e025fc8a1b52ea8dd87d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "5a7691966f6878645c09fbdc29d3e1a507ce4f86ecb4e025fc8a1b52ea8dd87d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5a7691966f6878645c09fbdc29d3e1a507ce4f86ecb4e025fc8a1b52ea8dd87d", kill_on_drop: false }`
[INFO] [stdout] 5a7691966f6878645c09fbdc29d3e1a507ce4f86ecb4e025fc8a1b52ea8dd87d
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+a609fb45efad59dfd459c76e50899be9f0583b5a" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] dca8200a0e0fa80bf83833eb4f2481632f50db0a25dcd767bbd669f5da12c742
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "dca8200a0e0fa80bf83833eb4f2481632f50db0a25dcd767bbd669f5da12c742", kill_on_drop: false }`
[INFO] [stderr]    Compiling pkg-config v0.3.19
[INFO] [stderr]    Compiling winapi-build v0.1.1
[INFO] [stderr]     Checking remove_dir_all v0.5.3
[INFO] [stderr]     Checking utf8-ranges v0.1.3
[INFO] [stderr]     Checking regex-syntax v0.3.9
[INFO] [stderr]    Compiling libc v0.2.81
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling num-iter v0.1.42
[INFO] [stderr]     Checking memchr v0.1.11
[INFO] [stderr]     Checking remutex v0.1.1
[INFO] [stderr]     Checking rand v0.4.6
[INFO] [stderr]     Checking aho-corasick v0.5.3
[INFO] [stderr]    Compiling kernel32-sys v0.2.2
[INFO] [stderr]    Compiling libhdf5-lib v0.2.0
[INFO] [stderr]     Checking thread-id v2.0.0
[INFO] [stderr]     Checking thread_local v0.2.7
[INFO] [stderr]     Checking tempdir v0.3.7
[INFO] [stderr]     Checking regex v0.1.80
[INFO] [stderr]     Checking num v0.1.42
[INFO] [stderr]    Compiling libhdf5-sys v0.2.0
[INFO] [stderr]    Compiling hdf5-rs v0.2.0 (/opt/rustwide/workdir)
[INFO] [stdout] error: linking with `cc` failed: exit code: 1
[INFO] [stdout]   |
[INFO] [stdout]   = note: "cc" "-Wl,--as-needed" "-Wl,-z,noexecstack" "-m64" "-Wl,--eh-frame-hdr" "-L" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib" "/opt/rustwide/target/debug/build/libhdf5-sys-8579c12591773466/build_script_build-8579c12591773466.build_script_build.dne67hon-cgu.0.rcgu.o" "/opt/rustwide/target/debug/build/libhdf5-sys-8579c12591773466/build_script_build-8579c12591773466.build_script_build.dne67hon-cgu.1.rcgu.o" "/opt/rustwide/target/debug/build/libhdf5-sys-8579c12591773466/build_script_build-8579c12591773466.build_script_build.dne67hon-cgu.2.rcgu.o" "/opt/rustwide/target/debug/build/libhdf5-sys-8579c12591773466/build_script_build-8579c12591773466.build_script_build.dne67hon-cgu.3.rcgu.o" "/opt/rustwide/target/debug/build/libhdf5-sys-8579c12591773466/build_script_build-8579c12591773466.build_script_build.dne67hon-cgu.4.rcgu.o" "/opt/rustwide/target/debug/build/libhdf5-sys-8579c12591773466/build_script_build-8579c12591773466.build_script_build.dne67hon-cgu.5.rcgu.o" "/opt/rustwide/target/debug/build/libhdf5-sys-8579c12591773466/build_script_build-8579c12591773466.build_script_build.dne67hon-cgu.6.rcgu.o" "-o" "/opt/rustwide/target/debug/build/libhdf5-sys-8579c12591773466/build_script_build-8579c12591773466" "/opt/rustwide/target/debug/build/libhdf5-sys-8579c12591773466/build_script_build-8579c12591773466.2yk9jc0eldkxaysi.rcgu.o" "-Wl,--gc-sections" "-pie" "-Wl,-zrelro" "-Wl,-znow" "-nodefaultlibs" "-L" "/opt/rustwide/target/debug/deps" "-L" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/liblibhdf5_lib-52e86832f616e9be.rlib" "-Wl,--start-group" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd-25c6acf8063a3802.rlib" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/libpanic_unwind-539f13c9442f1597.rlib" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/libminiz_oxide-37db28e905edb56b.rlib" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/libadler-9ef2480568df55af.rlib" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/libobject-1e0f0992cdbecd66.rlib" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/libaddr2line-6c8e02b8fedc1e5f.rlib" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/libgimli-807e5ad203594490.rlib" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_demangle-083fce1bea11612a.rlib" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/libhashbrown-1af568081add9042.rlib" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_alloc-1395b54a3b3f45bf.rlib" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/libunwind-caba820045f178d5.rlib" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcfg_if-512eb53291f6de7e.rlib" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/liblibc-5efacc5025f9f3d8.rlib" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/liballoc-9c4002b5f79ba0e1.rlib" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_core-90996f4879673567.rlib" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcore-9ea09a899c3eda46.rlib" "-Wl,--end-group" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcompiler_builtins-ef2408da76957905.rlib" "-Wl,-Bdynamic" "-lhdf5" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc"
[INFO] [stdout]   = note: /usr/bin/ld: cannot find -lhdf5
[INFO] [stdout]           collect2: error: ld returned 1 exit status
[INFO] [stdout]           
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `libhdf5-sys`
[INFO] [stdout] error: aborting due to previous error
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] 
[INFO] [stderr] To learn more, run the command again with --verbose.
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stdout] error: linking with `cc` failed: exit code: 1
[INFO] [stdout]   |
[INFO] [stdout]   = note: "cc" "-Wl,--as-needed" "-Wl,-z,noexecstack" "-m64" "-Wl,--eh-frame-hdr" "-L" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib" "/opt/rustwide/target/debug/build/hdf5-rs-90ab4a4de059b9fe/build_script_build-90ab4a4de059b9fe.build_script_build.4c1ampfj-cgu.0.rcgu.o" "/opt/rustwide/target/debug/build/hdf5-rs-90ab4a4de059b9fe/build_script_build-90ab4a4de059b9fe.build_script_build.4c1ampfj-cgu.1.rcgu.o" "/opt/rustwide/target/debug/build/hdf5-rs-90ab4a4de059b9fe/build_script_build-90ab4a4de059b9fe.build_script_build.4c1ampfj-cgu.2.rcgu.o" "/opt/rustwide/target/debug/build/hdf5-rs-90ab4a4de059b9fe/build_script_build-90ab4a4de059b9fe.build_script_build.4c1ampfj-cgu.3.rcgu.o" "/opt/rustwide/target/debug/build/hdf5-rs-90ab4a4de059b9fe/build_script_build-90ab4a4de059b9fe.build_script_build.4c1ampfj-cgu.4.rcgu.o" "/opt/rustwide/target/debug/build/hdf5-rs-90ab4a4de059b9fe/build_script_build-90ab4a4de059b9fe.build_script_build.4c1ampfj-cgu.5.rcgu.o" "/opt/rustwide/target/debug/build/hdf5-rs-90ab4a4de059b9fe/build_script_build-90ab4a4de059b9fe.build_script_build.4c1ampfj-cgu.6.rcgu.o" "-o" "/opt/rustwide/target/debug/build/hdf5-rs-90ab4a4de059b9fe/build_script_build-90ab4a4de059b9fe" "/opt/rustwide/target/debug/build/hdf5-rs-90ab4a4de059b9fe/build_script_build-90ab4a4de059b9fe.1sk5283lqwp4j6ur.rcgu.o" "-Wl,--gc-sections" "-pie" "-Wl,-zrelro" "-Wl,-znow" "-nodefaultlibs" "-L" "/opt/rustwide/target/debug/deps" "-L" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/liblibhdf5_lib-52e86832f616e9be.rlib" "-Wl,--start-group" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd-25c6acf8063a3802.rlib" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/libpanic_unwind-539f13c9442f1597.rlib" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/libminiz_oxide-37db28e905edb56b.rlib" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/libadler-9ef2480568df55af.rlib" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/libobject-1e0f0992cdbecd66.rlib" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/libaddr2line-6c8e02b8fedc1e5f.rlib" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/libgimli-807e5ad203594490.rlib" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_demangle-083fce1bea11612a.rlib" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/libhashbrown-1af568081add9042.rlib" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_alloc-1395b54a3b3f45bf.rlib" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/libunwind-caba820045f178d5.rlib" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcfg_if-512eb53291f6de7e.rlib" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/liblibc-5efacc5025f9f3d8.rlib" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/liballoc-9c4002b5f79ba0e1.rlib" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_core-90996f4879673567.rlib" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcore-9ea09a899c3eda46.rlib" "-Wl,--end-group" "/opt/rustwide/rustup-home/toolchains/a609fb45efad59dfd459c76e50899be9f0583b5a/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcompiler_builtins-ef2408da76957905.rlib" "-Wl,-Bdynamic" "-lhdf5" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc"
[INFO] [stdout]   = note: /usr/bin/ld: cannot find -lhdf5
[INFO] [stdout]           collect2: error: ld returned 1 exit status
[INFO] [stdout]           
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to previous error
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: build failed
[INFO] running `Command { std: "docker" "inspect" "dca8200a0e0fa80bf83833eb4f2481632f50db0a25dcd767bbd669f5da12c742", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "dca8200a0e0fa80bf83833eb4f2481632f50db0a25dcd767bbd669f5da12c742", kill_on_drop: false }`
[INFO] [stdout] dca8200a0e0fa80bf83833eb4f2481632f50db0a25dcd767bbd669f5da12c742