[INFO] fetching crate d4utils 0.1.16... [INFO] checking d4utils-0.1.16 against master#a609fb45efad59dfd459c76e50899be9f0583b5a for pr-80579 [INFO] extracting crate d4utils 0.1.16 into /workspace/builds/worker-3/source [INFO] validating manifest of crates.io crate d4utils 0.1.16 on toolchain a609fb45efad59dfd459c76e50899be9f0583b5a [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a609fb45efad59dfd459c76e50899be9f0583b5a" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate d4utils 0.1.16 [INFO] finished tweaking crates.io crate d4utils 0.1.16 [INFO] tweaked toml for crates.io crate d4utils 0.1.16 written to /workspace/builds/worker-3/source/Cargo.toml [INFO] crate crates.io crate d4utils 0.1.16 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a609fb45efad59dfd459c76e50899be9f0583b5a" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+a609fb45efad59dfd459c76e50899be9f0583b5a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] a3a4183d481453d65e291b5fc6593e8890cb7064e8f119a8f160cc76a5c48e69 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "a3a4183d481453d65e291b5fc6593e8890cb7064e8f119a8f160cc76a5c48e69", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "a3a4183d481453d65e291b5fc6593e8890cb7064e8f119a8f160cc76a5c48e69", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a3a4183d481453d65e291b5fc6593e8890cb7064e8f119a8f160cc76a5c48e69", kill_on_drop: false }` [INFO] [stdout] a3a4183d481453d65e291b5fc6593e8890cb7064e8f119a8f160cc76a5c48e69 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+a609fb45efad59dfd459c76e50899be9f0583b5a" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] cbf65931420978fbfe1fcab98583db766a1a801b509dcc22c77026a31df6bc2a [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "cbf65931420978fbfe1fcab98583db766a1a801b509dcc22c77026a31df6bc2a", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.80 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling version_check v0.9.2 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling regex-syntax v0.6.21 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling yaml-rust v0.3.5 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling termcolor v1.1.2 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling const_fn v0.4.3 [INFO] [stderr] Compiling getrandom v0.1.15 [INFO] [stderr] Compiling serde v1.0.117 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Compiling syn v1.0.53 [INFO] [stderr] Compiling serde_json v1.0.59 [INFO] [stderr] Compiling serde_derive v1.0.117 [INFO] [stderr] Checking itoa v0.4.6 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling libloading v0.6.5 [INFO] [stderr] Compiling crossbeam-utils v0.8.1 [INFO] [stderr] Compiling memoffset v0.6.1 [INFO] [stderr] Compiling miniz_oxide v0.4.3 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling rayon v1.5.0 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling log v0.4.11 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Compiling clang-sys v1.0.3 [INFO] [stderr] Checking regex v1.4.2 [INFO] [stderr] Compiling aho-corasick v0.7.15 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking memmap v0.7.0 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Checking crossbeam-channel v0.5.0 [INFO] [stderr] Checking flate2 v1.0.19 [INFO] [stderr] Checking clap v2.33.3 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking crossbeam-epoch v0.9.1 [INFO] [stderr] Checking plotters v0.2.15 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking crossbeam-deque v0.8.0 [INFO] [stderr] Checking env_logger v0.7.1 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking rayon-core v1.9.0 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Checking d4-framefile v0.1.16 [INFO] [stderr] Compiling d4-hts v0.1.16 [INFO] [stderr] Compiling d4-bigwig v0.1.16 [INFO] [stderr] error: failed to run custom build command for `d4-hts v0.1.16` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/d4-hts-fbde9d43bd3dce01/build-script-build` (exit code: 101) [INFO] [stderr] --- stderr [INFO] [stderr] + pushd /opt/rustwide/target/debug/build/d4-hts-90af1955201e2c3f/out [INFO] [stderr] + HTSLIB_VERSION=1.11 [INFO] [stderr] + rm -rf /opt/rustwide/target/debug/build/d4-hts-90af1955201e2c3f/out/htslib [INFO] [stderr] + git clone -b 1.11 https://github.com/samtools/htslib.git [INFO] [stderr] Cloning into 'htslib'... [INFO] [stderr] fatal: unable to access 'https://github.com/samtools/htslib.git/': Could not resolve host: github.com [INFO] [stderr] thread 'main' panicked at 'assertion failed: Command::new(\"bash\").args(&[\"build_htslib.sh\",\n &version]).stdout(std::process::Stdio::null()).spawn().expect(\"Unable to build htslib\").wait().unwrap().success()', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.1.16/build.rs:34:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55e435224807 - std::backtrace_rs::backtrace::libunwind::trace::h746c3e9529d524bc [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x55e435224807 - std::backtrace_rs::backtrace::trace_unsynchronized::h84373278bfb39e0c [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55e435224807 - std::sys_common::backtrace::_print_fmt::h517324efde750597 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55e435224807 - ::fmt::hf594ab77fac89284 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55e43524712c - core::fmt::write::h3868db8542c90941 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/core/src/fmt/mod.rs:1078:17 [INFO] [stderr] 5: 0x55e435220a62 - std::io::Write::write_fmt::h3f6656f045fa877f [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/io/mod.rs:1519:15 [INFO] [stderr] 6: 0x55e435226cc5 - std::sys_common::backtrace::_print::hda7655c057c24dcc [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55e435226cc5 - std::sys_common::backtrace::print::h546a6c8431d46287 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55e435226cc5 - std::panicking::default_hook::{{closure}}::h006dd083853faf51 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x55e435226823 - std::panicking::default_hook::hf0f9afb1017317fc [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x55e435227461 - std::panicking::rust_panic_with_hook::hb7a19826c029b1d6 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x55e435226f77 - std::panicking::begin_panic_handler::{{closure}}::hde71edcd925d0c5e [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/panicking.rs:495:13 [INFO] [stderr] 12: 0x55e435224ccc - std::sys_common::backtrace::__rust_end_short_backtrace::h8a3c7d6cea578919 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55e435226f09 - rust_begin_unwind [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/panicking.rs:493:5 [INFO] [stderr] 14: 0x55e435245801 - core::panicking::panic_fmt::h20225113c4a2f8fd [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/core/src/panicking.rs:92:14 [INFO] [stderr] 15: 0x55e43524574d - core::panicking::panic::h35b77276aa4b0c12 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/core/src/panicking.rs:50:5 [INFO] [stderr] 16: 0x55e434c5c9c4 - build_script_build::build_own_htslib::h3b88e9389bbf240d [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.1.16/build.rs:34:5 [INFO] [stderr] 17: 0x55e434c5ceb4 - build_script_build::main::h72d773cfa44d2979 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.1.16/build.rs:66:9 [INFO] [stderr] 18: 0x55e434c5e5cb - core::ops::function::FnOnce::call_once::h7768ecda929610ae [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 19: 0x55e434c5df7e - std::sys_common::backtrace::__rust_begin_short_backtrace::h9892a6da7b8ea3fe [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 20: 0x55e434c5e4a1 - std::rt::lang_start::{{closure}}::h2506a3c94eb53a4b [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/rt.rs:66:18 [INFO] [stderr] 21: 0x55e435227977 - core::ops::function::impls:: for &F>::call_once::h54c39b9b8451875a [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 22: 0x55e435227977 - std::panicking::try::do_call::hcdfba51a06e21b42 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/panicking.rs:379:40 [INFO] [stderr] 23: 0x55e435227977 - std::panicking::try::h77386c66889b2066 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/panicking.rs:343:19 [INFO] [stderr] 24: 0x55e435227977 - std::panic::catch_unwind::hc55a0d8aadca44f0 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/panic.rs:396:14 [INFO] [stderr] 25: 0x55e435227977 - std::rt::lang_start_internal::h97dca9624db2aa85 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/rt.rs:51:25 [INFO] [stderr] 26: 0x55e434c5e477 - std::rt::lang_start::h34d6294aff2d52a6 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/rt.rs:65:5 [INFO] [stderr] 27: 0x55e434c5d58a - main [INFO] [stderr] 28: 0x7f9c391210b3 - __libc_start_main [INFO] [stderr] 29: 0x55e434c5c0be - _start [INFO] [stderr] 30: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "cbf65931420978fbfe1fcab98583db766a1a801b509dcc22c77026a31df6bc2a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "cbf65931420978fbfe1fcab98583db766a1a801b509dcc22c77026a31df6bc2a", kill_on_drop: false }` [INFO] [stdout] cbf65931420978fbfe1fcab98583db766a1a801b509dcc22c77026a31df6bc2a