[INFO] cloning repository https://github.com/wheaton5/molecule_kmers
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/wheaton5/molecule_kmers" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwheaton5%2Fmolecule_kmers", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwheaton5%2Fmolecule_kmers'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] f14be370bf23f2ad1ffa887c6f8ad07bf132014e
[INFO] checking wheaton5/molecule_kmers against master#a609fb45efad59dfd459c76e50899be9f0583b5a for pr-80579
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fwheaton5%2Fmolecule_kmers" "/workspace/builds/worker-2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/wheaton5/molecule_kmers on toolchain a609fb45efad59dfd459c76e50899be9f0583b5a
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a609fb45efad59dfd459c76e50899be9f0583b5a" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/wheaton5/molecule_kmers
[INFO] finished tweaking git repo https://github.com/wheaton5/molecule_kmers
[INFO] tweaked toml for git repo https://github.com/wheaton5/molecule_kmers written to /workspace/builds/worker-2/source/Cargo.toml
[INFO] crate git repo https://github.com/wheaton5/molecule_kmers already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a609fb45efad59dfd459c76e50899be9f0583b5a" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+a609fb45efad59dfd459c76e50899be9f0583b5a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] d79f330c4d799d874922f02eb6a2ed9bc09403648710982ebdbb633a59976cb4
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "d79f330c4d799d874922f02eb6a2ed9bc09403648710982ebdbb633a59976cb4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "d79f330c4d799d874922f02eb6a2ed9bc09403648710982ebdbb633a59976cb4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d79f330c4d799d874922f02eb6a2ed9bc09403648710982ebdbb633a59976cb4", kill_on_drop: false }`
[INFO] [stdout] d79f330c4d799d874922f02eb6a2ed9bc09403648710982ebdbb633a59976cb4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+a609fb45efad59dfd459c76e50899be9f0583b5a" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 3c541a1eb92a0aceeb3d741c96dec41f03d7cb7cf670b296125a14bcf340451b
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "3c541a1eb92a0aceeb3d741c96dec41f03d7cb7cf670b296125a14bcf340451b", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling autocfg v1.0.1
[INFO] [stderr]    Compiling pkg-config v0.3.19
[INFO] [stderr]    Compiling cc v1.0.66
[INFO] [stderr]     Checking cfg-if v1.0.0
[INFO] [stderr]     Checking lazy_static v1.4.0
[INFO] [stderr]    Compiling crc32fast v1.2.1
[INFO] [stderr]     Checking scopeguard v1.1.0
[INFO] [stderr]     Checking adler v0.2.3
[INFO] [stderr]    Compiling byteorder v1.3.4
[INFO] [stderr]     Checking unicode-width v0.1.8
[INFO] [stderr]     Checking bytecount v0.6.2
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking yaml-rust v0.3.5
[INFO] [stderr]     Checking fnv v1.0.7
[INFO] [stderr]     Checking itertools v0.9.0
[INFO] [stderr]     Checking num_cpus v1.13.0
[INFO] [stderr]     Checking buf_redux v0.8.4
[INFO] [stderr]     Checking textwrap v0.9.0
[INFO] [stderr]    Compiling crossbeam-utils v0.8.1
[INFO] [stderr]    Compiling memoffset v0.6.1
[INFO] [stderr]    Compiling miniz_oxide v0.4.3
[INFO] [stderr]    Compiling rayon v1.5.0
[INFO] [stderr]     Checking clap v2.27.1
[INFO] [stderr]     Checking hashbrown v0.1.8
[INFO] [stderr]    Compiling lzma-sys v0.1.17
[INFO] [stderr]    Compiling bzip2-sys v0.1.9+1.0.8
[INFO] [stderr]     Checking crossbeam-epoch v0.9.1
[INFO] [stderr]     Checking crossbeam-channel v0.5.0
[INFO] [stderr]     Checking flate2 v1.0.19
[INFO] [stderr]     Checking crossbeam-deque v0.8.0
[INFO] [stderr]     Checking xz2 v0.1.6
[INFO] [stderr]     Checking rayon-core v1.9.0
[INFO] [stderr]     Checking bzip2 v0.3.3
[INFO] [stderr]     Checking needletail v0.4.0
[INFO] [stderr]     Checking molecule_kmers v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `HashSet`
[INFO] [stdout]   --> src/main.rs:22:26
[INFO] [stdout]    |
[INFO] [stdout] 22 | use hashbrown::{HashMap, HashSet};
[INFO] [stdout]    |                          ^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: type `KMER_TYPE` should have an upper camel case name
[INFO] [stdout]   --> src/main.rs:55:6
[INFO] [stdout]    |
[INFO] [stdout] 55 | enum KMER_TYPE {
[INFO] [stdout]    |      ^^^^^^^^^ help: convert the identifier to upper camel case: `KmerType`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(non_camel_case_types)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variant `PAIRED_HET` should have an upper camel case name
[INFO] [stdout]   --> src/main.rs:56:5
[INFO] [stdout]    |
[INFO] [stdout] 56 |     PAIRED_HET,
[INFO] [stdout]    |     ^^^^^^^^^^ help: convert the identifier to upper camel case: `PairedHet`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variant `UNPAIRED_HET` should have an upper camel case name
[INFO] [stdout]   --> src/main.rs:57:5
[INFO] [stdout]    |
[INFO] [stdout] 57 |     UNPAIRED_HET,
[INFO] [stdout]    |     ^^^^^^^^^^^^ help: convert the identifier to upper camel case: `UnpairedHet`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/main.rs:157:50
[INFO] [stdout]     |
[INFO] [stdout] 157 | fn handle_subreads(vars: &Vec<i32>, writer: &mut Write) {
[INFO] [stdout]     |                                                  ^^^^^ help: use `dyn`: `dyn Write`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(bare_trait_objects)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `HashSet`
[INFO] [stdout]   --> src/main.rs:22:26
[INFO] [stdout]    |
[INFO] [stdout] 22 | use hashbrown::{HashMap, HashSet};
[INFO] [stdout]    |                          ^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: type `KMER_TYPE` should have an upper camel case name
[INFO] [stdout]   --> src/main.rs:55:6
[INFO] [stdout]    |
[INFO] [stdout] 55 | enum KMER_TYPE {
[INFO] [stdout]    |      ^^^^^^^^^ help: convert the identifier to upper camel case: `KmerType`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(non_camel_case_types)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variant `PAIRED_HET` should have an upper camel case name
[INFO] [stdout]   --> src/main.rs:56:5
[INFO] [stdout]    |
[INFO] [stdout] 56 |     PAIRED_HET,
[INFO] [stdout]    |     ^^^^^^^^^^ help: convert the identifier to upper camel case: `PairedHet`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variant `UNPAIRED_HET` should have an upper camel case name
[INFO] [stdout]   --> src/main.rs:57:5
[INFO] [stdout]    |
[INFO] [stdout] 57 |     UNPAIRED_HET,
[INFO] [stdout]    |     ^^^^^^^^^^^^ help: convert the identifier to upper camel case: `UnpairedHet`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/main.rs:157:50
[INFO] [stdout]     |
[INFO] [stdout] 157 | fn handle_subreads(vars: &Vec<i32>, writer: &mut Write) {
[INFO] [stdout]     |                                                  ^^^^^ help: use `dyn`: `dyn Write`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(bare_trait_objects)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `first`
[INFO] [stdout]   --> src/main.rs:84:17
[INFO] [stdout]    |
[INFO] [stdout] 84 |             let first = str::from_utf8(&buf1).unwrap();
[INFO] [stdout]    |                 ^^^^^ help: if this is intentional, prefix it with an underscore: `_first`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `current_readname`
[INFO] [stdout]    --> src/main.rs:120:13
[INFO] [stdout]     |
[INFO] [stdout] 120 |         let mut current_readname = String::new();
[INFO] [stdout]     |             ^^^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_current_readname`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:120:13
[INFO] [stdout]     |
[INFO] [stdout] 120 |         let mut current_readname = String::new();
[INFO] [stdout]     |             ----^^^^^^^^^^^^^^^^
[INFO] [stdout]     |             |
[INFO] [stdout]     |             help: remove this `mut`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_mut)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct is never constructed: `Kmers`
[INFO] [stdout]   --> src/main.rs:47:8
[INFO] [stdout]    |
[INFO] [stdout] 47 | struct Kmers {
[INFO] [stdout]    |        ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `write_1_zero`
[INFO] [stdout]    --> src/main.rs:464:4
[INFO] [stdout]     |
[INFO] [stdout] 464 | fn write_1_zero() {
[INFO] [stdout]     |    ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `write_2_zeros`
[INFO] [stdout]    --> src/main.rs:470:4
[INFO] [stdout]     |
[INFO] [stdout] 470 | fn write_2_zeros() {
[INFO] [stdout]     |    ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `first`
[INFO] [stdout]   --> src/main.rs:84:17
[INFO] [stdout]    |
[INFO] [stdout] 84 |             let first = str::from_utf8(&buf1).unwrap();
[INFO] [stdout]    |                 ^^^^^ help: if this is intentional, prefix it with an underscore: `_first`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `current_readname`
[INFO] [stdout]    --> src/main.rs:120:13
[INFO] [stdout]     |
[INFO] [stdout] 120 |         let mut current_readname = String::new();
[INFO] [stdout]     |             ^^^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_current_readname`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/main.rs:120:13
[INFO] [stdout]     |
[INFO] [stdout] 120 |         let mut current_readname = String::new();
[INFO] [stdout]     |             ----^^^^^^^^^^^^^^^^
[INFO] [stdout]     |             |
[INFO] [stdout]     |             help: remove this `mut`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_mut)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 11 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct is never constructed: `Kmers`
[INFO] [stdout]   --> src/main.rs:47:8
[INFO] [stdout]    |
[INFO] [stdout] 47 | struct Kmers {
[INFO] [stdout]    |        ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `write_1_zero`
[INFO] [stdout]    --> src/main.rs:464:4
[INFO] [stdout]     |
[INFO] [stdout] 464 | fn write_1_zero() {
[INFO] [stdout]     |    ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `write_2_zeros`
[INFO] [stdout]    --> src/main.rs:470:4
[INFO] [stdout]     |
[INFO] [stdout] 470 | fn write_2_zeros() {
[INFO] [stdout]     |    ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 11 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 35.20s
[INFO] running `Command { std: "docker" "inspect" "3c541a1eb92a0aceeb3d741c96dec41f03d7cb7cf670b296125a14bcf340451b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3c541a1eb92a0aceeb3d741c96dec41f03d7cb7cf670b296125a14bcf340451b", kill_on_drop: false }`
[INFO] [stdout] 3c541a1eb92a0aceeb3d741c96dec41f03d7cb7cf670b296125a14bcf340451b