[INFO] cloning repository https://github.com/luyoutao/sam_seq_compressibility [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/luyoutao/sam_seq_compressibility" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fluyoutao%2Fsam_seq_compressibility", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fluyoutao%2Fsam_seq_compressibility'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] bfeff70ff885351eb9b1f31a452d930026d38dea [INFO] checking luyoutao/sam_seq_compressibility against master#a609fb45efad59dfd459c76e50899be9f0583b5a for pr-80579 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fluyoutao%2Fsam_seq_compressibility" "/workspace/builds/worker-8/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-8/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/luyoutao/sam_seq_compressibility on toolchain a609fb45efad59dfd459c76e50899be9f0583b5a [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a609fb45efad59dfd459c76e50899be9f0583b5a" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/luyoutao/sam_seq_compressibility [INFO] finished tweaking git repo https://github.com/luyoutao/sam_seq_compressibility [INFO] tweaked toml for git repo https://github.com/luyoutao/sam_seq_compressibility written to /workspace/builds/worker-8/source/Cargo.toml [INFO] crate git repo https://github.com/luyoutao/sam_seq_compressibility already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a609fb45efad59dfd459c76e50899be9f0583b5a" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+a609fb45efad59dfd459c76e50899be9f0583b5a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 6025787eaa2469ac2bed0e4a4726b00b43871a20dccc9855a0d446209531723a [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "6025787eaa2469ac2bed0e4a4726b00b43871a20dccc9855a0d446209531723a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "6025787eaa2469ac2bed0e4a4726b00b43871a20dccc9855a0d446209531723a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6025787eaa2469ac2bed0e4a4726b00b43871a20dccc9855a0d446209531723a", kill_on_drop: false }` [INFO] [stdout] 6025787eaa2469ac2bed0e4a4726b00b43871a20dccc9855a0d446209531723a [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+a609fb45efad59dfd459c76e50899be9f0583b5a" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] c8a20d096e398adc306062fdeb5a19ce5863982b979fc21fd24188a706340189 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "c8a20d096e398adc306062fdeb5a19ce5863982b979fc21fd24188a706340189", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.71 [INFO] [stderr] Compiling autocfg v1.0.0 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling log v0.4.11 [INFO] [stderr] Checking regex-syntax v0.6.18 [INFO] [stderr] Checking quick-error v1.2.3 [INFO] [stderr] Checking termcolor v1.1.0 [INFO] [stderr] Checking unicode-width v0.1.8 [INFO] [stderr] Checking thread_local v1.0.1 [INFO] [stderr] Checking miniz_oxide v0.4.0 [INFO] [stderr] Checking getopts v0.2.21 [INFO] [stderr] Checking humantime v1.3.0 [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Compiling num-integer v0.1.43 [INFO] [stderr] Checking aho-corasick v0.7.13 [INFO] [stderr] Checking time v0.1.43 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking flate2 v1.0.16 [INFO] [stderr] Checking chrono v0.4.13 [INFO] [stderr] Checking regex v1.3.9 [INFO] [stderr] Checking env_logger v0.7.1 [INFO] [stderr] Checking sam_seq_compressibility v0.2.1 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused imports: `debug`, `error`, `warn` [INFO] [stdout] --> src/main.rs:6:11 [INFO] [stdout] | [INFO] [stdout] 6 | use log::{debug, error, info, trace, warn, LevelFilter}; [INFO] [stdout] | ^^^^^ ^^^^^ ^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `BufWriter` [INFO] [stdout] --> src/main.rs:10:41 [INFO] [stdout] | [INFO] [stdout] 10 | use std::io::{self, BufRead, BufReader, BufWriter, Read, Write}; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::str::from_utf8` [INFO] [stdout] --> src/main.rs:14:5 [INFO] [stdout] | [INFO] [stdout] 14 | use std::str::from_utf8; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `debug`, `error`, `warn` [INFO] [stdout] --> src/main.rs:6:11 [INFO] [stdout] | [INFO] [stdout] 6 | use log::{debug, error, info, trace, warn, LevelFilter}; [INFO] [stdout] | ^^^^^ ^^^^^ ^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `BufWriter` [INFO] [stdout] --> src/main.rs:10:41 [INFO] [stdout] | [INFO] [stdout] 10 | use std::io::{self, BufRead, BufReader, BufWriter, Read, Write}; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::str::from_utf8` [INFO] [stdout] --> src/main.rs:14:5 [INFO] [stdout] | [INFO] [stdout] 14 | use std::str::from_utf8; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `read_pair` is never read [INFO] [stdout] --> src/main.rs:365:13 [INFO] [stdout] | [INFO] [stdout] 365 | let mut read_pair: Option = None; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_assignments)]` on by default [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `read_pair` is never read [INFO] [stdout] --> src/main.rs:365:13 [INFO] [stdout] | [INFO] [stdout] 365 | let mut read_pair: Option = None; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_assignments)]` on by default [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:361:13 [INFO] [stdout] | [INFO] [stdout] 361 | let mut infh = self.infh.as_mut().expect("Failed to access infh!"); [INFO] [stdout] | ----^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:362:13 [INFO] [stdout] | [INFO] [stdout] 362 | let mut outfh = self.outfh.as_mut().expect("Failed to access outfh"); [INFO] [stdout] | ----^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:361:13 [INFO] [stdout] | [INFO] [stdout] 361 | let mut infh = self.infh.as_mut().expect("Failed to access infh!"); [INFO] [stdout] | ----^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:362:13 [INFO] [stdout] | [INFO] [stdout] 362 | let mut outfh = self.outfh.as_mut().expect("Failed to access outfh"); [INFO] [stdout] | ----^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `endtype` [INFO] [stdout] --> src/main.rs:316:5 [INFO] [stdout] | [INFO] [stdout] 316 | endtype: EndType, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `endtype` [INFO] [stdout] --> src/main.rs:316:5 [INFO] [stdout] | [INFO] [stdout] 316 | endtype: EndType, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `std::result::Result` that must be used [INFO] [stdout] --> src/main.rs:366:9 [INFO] [stdout] | [INFO] [stdout] 366 | outfh.write(format!("ReadID\tSeqR1\tSeqR2\tSeqPair\tCompressibilityR1\tCompressibilityR2\tCompressibilityPair\n").as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `std::result::Result` that must be used [INFO] [stdout] --> src/main.rs:366:9 [INFO] [stdout] | [INFO] [stdout] 366 | outfh.write(format!("ReadID\tSeqR1\tSeqR2\tSeqPair\tCompressibilityR1\tCompressibilityR2\tCompressibilityPair\n").as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `std::result::Result` that must be used [INFO] [stdout] --> src/main.rs:427:21 [INFO] [stdout] | [INFO] [stdout] 427 | outfh.write(format!("{}\t{}\t{}\t{}", &id, &seq1, &seq2, &seqs).as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `std::result::Result` that must be used [INFO] [stdout] --> src/main.rs:427:21 [INFO] [stdout] | [INFO] [stdout] 427 | outfh.write(format!("{}\t{}\t{}\t{}", &id, &seq1, &seq2, &seqs).as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `std::result::Result` that must be used [INFO] [stdout] --> src/main.rs:448:21 [INFO] [stdout] | [INFO] [stdout] 448 | outfh.write(format!("\t{}\t{}\t{}\n", ratio1, ratio2, ratio).as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `std::result::Result` that must be used [INFO] [stdout] --> src/main.rs:490:17 [INFO] [stdout] | [INFO] [stdout] 490 | outfh.write(format!("{}\t{}\t{}\t{}\n", &id, &seq1, &seq2, &seqs).as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `std::result::Result` that must be used [INFO] [stdout] --> src/main.rs:510:17 [INFO] [stdout] | [INFO] [stdout] 510 | outfh.write(format!("\t{}\t{}\t{}\n", ratio1, ratio2, ratio).as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `std::result::Result` that must be used [INFO] [stdout] --> src/main.rs:448:21 [INFO] [stdout] | [INFO] [stdout] 448 | outfh.write(format!("\t{}\t{}\t{}\n", ratio1, ratio2, ratio).as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `std::result::Result` that must be used [INFO] [stdout] --> src/main.rs:490:17 [INFO] [stdout] | [INFO] [stdout] 490 | outfh.write(format!("{}\t{}\t{}\t{}\n", &id, &seq1, &seq2, &seqs).as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `std::result::Result` that must be used [INFO] [stdout] --> src/main.rs:510:17 [INFO] [stdout] | [INFO] [stdout] 510 | outfh.write(format!("\t{}\t{}\t{}\n", ratio1, ratio2, ratio).as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 12 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 12 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 14.32s [INFO] running `Command { std: "docker" "inspect" "c8a20d096e398adc306062fdeb5a19ce5863982b979fc21fd24188a706340189", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c8a20d096e398adc306062fdeb5a19ce5863982b979fc21fd24188a706340189", kill_on_drop: false }` [INFO] [stdout] c8a20d096e398adc306062fdeb5a19ce5863982b979fc21fd24188a706340189