[INFO] cloning repository https://github.com/hillst/bamreadfilt
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/hillst/bamreadfilt" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fhillst%2Fbamreadfilt", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fhillst%2Fbamreadfilt'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 451c40cb7beb3c32eb64c42ed165b16126358e7d
[INFO] checking hillst/bamreadfilt against master#a609fb45efad59dfd459c76e50899be9f0583b5a for pr-80579
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fhillst%2Fbamreadfilt" "/workspace/builds/worker-8/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-8/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/hillst/bamreadfilt on toolchain a609fb45efad59dfd459c76e50899be9f0583b5a
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a609fb45efad59dfd459c76e50899be9f0583b5a" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/hillst/bamreadfilt
[INFO] finished tweaking git repo https://github.com/hillst/bamreadfilt
[INFO] tweaked toml for git repo https://github.com/hillst/bamreadfilt written to /workspace/builds/worker-8/source/Cargo.toml
[INFO] crate git repo https://github.com/hillst/bamreadfilt already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a609fb45efad59dfd459c76e50899be9f0583b5a" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+a609fb45efad59dfd459c76e50899be9f0583b5a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] f32c4d9eb78c34f660882794644504c63ae6ca2713fe6f5e676b351fa32d88f4
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "f32c4d9eb78c34f660882794644504c63ae6ca2713fe6f5e676b351fa32d88f4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "f32c4d9eb78c34f660882794644504c63ae6ca2713fe6f5e676b351fa32d88f4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f32c4d9eb78c34f660882794644504c63ae6ca2713fe6f5e676b351fa32d88f4", kill_on_drop: false }`
[INFO] [stdout] f32c4d9eb78c34f660882794644504c63ae6ca2713fe6f5e676b351fa32d88f4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+a609fb45efad59dfd459c76e50899be9f0583b5a" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] ae9f10471ca49c19731623cab5d54309a5f4ce3d40d9fa3892fcc88a1060c7cc
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "ae9f10471ca49c19731623cab5d54309a5f4ce3d40d9fa3892fcc88a1060c7cc", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.71
[INFO] [stderr]    Compiling memchr v2.3.3
[INFO] [stderr]    Compiling log v0.4.8
[INFO] [stderr]    Compiling glob v0.2.11
[INFO] [stderr]    Compiling ucd-util v0.1.8
[INFO] [stderr]    Compiling regex v0.2.11
[INFO] [stderr]    Compiling utf8-ranges v1.0.4
[INFO] [stderr]    Compiling unicode-width v0.1.8
[INFO] [stderr]    Compiling ansi_term v0.11.0
[INFO] [stderr]    Compiling bindgen v0.32.3
[INFO] [stderr]    Compiling strsim v0.8.0
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]     Checking tinyvec v0.3.3
[INFO] [stderr]    Compiling peeking_take_while v0.1.2
[INFO] [stderr]     Checking bitflags v0.9.1
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]    Compiling proc-macro2 v0.2.3
[INFO] [stderr]     Checking itertools v0.6.5
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling libloading v0.4.3
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling regex-syntax v0.5.6
[INFO] [stderr]     Checking unicode-normalization v0.1.13
[INFO] [stderr]    Compiling quote v0.4.2
[INFO] [stderr]    Compiling log v0.3.9
[INFO] [stderr]    Compiling aho-corasick v0.6.10
[INFO] [stderr]    Compiling clang-sys v0.21.2
[INFO] [stderr]     Checking rand v0.4.6
[INFO] [stderr]    Compiling memchr v1.0.2
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling which v1.0.5
[INFO] [stderr]    Compiling clap v2.33.1
[INFO] [stderr]    Compiling nom v3.2.1
[INFO] [stderr]     Checking idna v0.1.5
[INFO] [stderr]     Checking url v1.7.2
[INFO] [stderr]    Compiling cexpr v0.2.3
[INFO] [stderr]    Compiling env_logger v0.4.3
[INFO] [stderr]    Compiling rust-htslib v0.16.0
[INFO] [stderr]     Checking bamreadfilt v0.1.1 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused imports: `StoreFalse`, `StoreOption`
[INFO] [stdout]  --> src/lib.rs:5:50
[INFO] [stdout]   |
[INFO] [stdout] 5 | use argparse::{ArgumentParser, StoreTrue, Store, StoreFalse, StoreOption};
[INFO] [stdout]   |                                                  ^^^^^^^^^^  ^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashSet`
[INFO] [stdout]  --> src/lib.rs:6:5
[INFO] [stdout]   |
[INFO] [stdout] 6 | use std::collections::HashSet;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::fs::File`
[INFO] [stdout]   --> src/lib.rs:10:5
[INFO] [stdout]    |
[INFO] [stdout] 10 | use std::fs::File;
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0432]: unresolved import `test`
[INFO] [stdout]    --> src/lib.rs:519:9
[INFO] [stdout]     |
[INFO] [stdout] 519 |     use test::Bencher;
[INFO] [stdout]     |         ^^^^
[INFO] [stdout]     |         |
[INFO] [stdout]     |         unresolved import
[INFO] [stdout]     |         help: a similar path exists: `tests::test::test`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `StoreFalse`, `StoreOption`
[INFO] [stdout]  --> src/lib.rs:5:50
[INFO] [stdout]   |
[INFO] [stdout] 5 | use argparse::{ArgumentParser, StoreTrue, Store, StoreFalse, StoreOption};
[INFO] [stdout]   |                                                  ^^^^^^^^^^  ^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashSet`
[INFO] [stdout]  --> src/lib.rs:6:5
[INFO] [stdout]   |
[INFO] [stdout] 6 | use std::collections::HashSet;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::fs::File`
[INFO] [stdout]   --> src/lib.rs:10:5
[INFO] [stdout]    |
[INFO] [stdout] 10 | use std::fs::File;
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: use of unstable library feature 'test': `bench` is a part of custom test frameworks which are unstable
[INFO] [stdout]    --> src/lib.rs:658:7
[INFO] [stdout]     |
[INFO] [stdout] 658 |     #[bench]
[INFO] [stdout]     |       ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[deny(soft_unstable)]` on by default
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release!
[INFO] [stdout]     = note: for more information, see issue #64266 <https://github.com/rust-lang/rust/issues/64266>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `fetched`
[INFO] [stdout]    --> src/lib.rs:213:13
[INFO] [stdout]     |
[INFO] [stdout] 213 |         let fetched = match bam_reader.fetch(vcf_head.chrm, vcf_head.pos, vcf_head.pos + 1){
[INFO] [stdout]     |             ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_fetched`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `fetched`
[INFO] [stdout]    --> src/lib.rs:237:21
[INFO] [stdout]     |
[INFO] [stdout] 237 |                 let fetched = match self._bam.fetch(rid, entry.pos(), entry.pos() + 1){
[INFO] [stdout]     |                     ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_fetched`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `vcf`
[INFO] [stdout]    --> src/lib.rs:352:64
[INFO] [stdout]     |
[INFO] [stdout] 352 |     pub fn collect_stats_stream(&mut self, item: &bam::Record, vcf: &VCFRecord, pir: usize) {
[INFO] [stdout]     |                                                                ^^^ help: if this is intentional, prefix it with an underscore: `_vcf`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variant is never constructed: `BamRecord`
[INFO] [stdout]    --> src/lib.rs:432:5
[INFO] [stdout]     |
[INFO] [stdout] 432 |     BamRecord(bam::Record),
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function is never used: `iter`
[INFO] [stdout]    --> src/lib.rs:480:8
[INFO] [stdout]     |
[INFO] [stdout] 480 |     fn iter(&self) -> std::collections::hash_set::Iter<UniqueRead> {
[INFO] [stdout]     |        ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function is never used: `len`
[INFO] [stdout]    --> src/lib.rs:484:8
[INFO] [stdout]     |
[INFO] [stdout] 484 |     fn len(&self) -> usize {
[INFO] [stdout]     |        ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function is never used: `max`
[INFO] [stdout]    --> src/lib.rs:488:8
[INFO] [stdout]     |
[INFO] [stdout] 488 |     fn max(&self) -> Option<&UniqueRead> {
[INFO] [stdout]     |        ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function is never used: `min`
[INFO] [stdout]    --> src/lib.rs:492:8
[INFO] [stdout]     |
[INFO] [stdout] 492 |     fn min(&self) -> Option<&UniqueRead> {
[INFO] [stdout]     |        ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 11 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0308]: mismatched types
[INFO] [stdout]    --> src/lib.rs:595:23
[INFO] [stdout]     |
[INFO] [stdout] 595 |             ra.update(i);
[INFO] [stdout]     |                       ^ expected `f64`, found integer
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 3 previous errors; 3 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] Some errors have detailed explanations: E0308, E0432.
[INFO] [stdout] 
[INFO] [stdout] For more information about an error, try `rustc --explain E0308`.
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated function `rand::sample`: renamed to seq::sample_iter
[INFO] [stdout]   --> src/mrd.rs:95:23
[INFO] [stdout]    |
[INFO] [stdout] 95 |         master_list = sample(&mut rng, master_list, config.max_sites as usize);
[INFO] [stdout]    |                       ^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated function `rand::sample`: renamed to seq::sample_iter
[INFO] [stdout]   --> src/mrd.rs:43:9
[INFO] [stdout]    |
[INFO] [stdout] 43 |     use rand::sample;
[INFO] [stdout]    |         ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `bamreadfilt`
[INFO] [stderr] 
[INFO] [stderr] To learn more, run the command again with --verbose.
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stdout] warning: use of deprecated function `rand::sample`: renamed to seq::sample_iter
[INFO] [stdout]   --> src/mrd.rs:95:23
[INFO] [stdout]    |
[INFO] [stdout] 95 |         master_list = sample(&mut rng, master_list, config.max_sites as usize);
[INFO] [stdout]    |                       ^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated function `rand::sample`: renamed to seq::sample_iter
[INFO] [stdout]   --> src/mrd.rs:43:9
[INFO] [stdout]    |
[INFO] [stdout] 43 |     use rand::sample;
[INFO] [stdout]    |         ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `p`
[INFO] [stdout]    --> src/main.rs:138:37
[INFO] [stdout]     |
[INFO] [stdout] 138 |             .filter(| &(ref _i, _v, p)| { ! config.remove_duplicates || ! _i.is_duplicate() }) //rmdup
[INFO] [stdout]     |                                     ^ help: if this is intentional, prefix it with an underscore: `_p`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `full_list`
[INFO] [stdout]   --> src/main.rs:64:9
[INFO] [stdout]    |
[INFO] [stdout] 64 |     let mut full_list: Vec<rust_htslib::bcf::Record> = vec![];
[INFO] [stdout]    |         ^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_full_list`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `i`
[INFO] [stdout]   --> src/main.rs:72:10
[INFO] [stdout]    |
[INFO] [stdout] 72 |     for (i, entry) in vcf_itr.records().enumerate() {
[INFO] [stdout]    |          ^ help: if this is intentional, prefix it with an underscore: `_i`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `p`
[INFO] [stdout]    --> src/main.rs:294:65
[INFO] [stdout]     |
[INFO] [stdout] 294 | ...                   .filter(| &(ref _i, _v, p)| { ! config.remove_duplicates || ! _i.is_duplicate() }) //rmdup
[INFO] [stdout]     |                                               ^ help: if this is intentional, prefix it with an underscore: `_p`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `p`
[INFO] [stdout]    --> src/mrd.rs:146:37
[INFO] [stdout]     |
[INFO] [stdout] 146 |             .filter(| &(ref _i, _v, p)| { ! config.remove_duplicates || ! _i.is_duplicate() }) //rmdup
[INFO] [stdout]     |                                     ^ help: if this is intentional, prefix it with an underscore: `_p`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `full_list`
[INFO] [stdout]   --> src/mrd.rs:72:9
[INFO] [stdout]    |
[INFO] [stdout] 72 |     let mut full_list: Vec<rust_htslib::bcf::Record> = vec![];
[INFO] [stdout]    |         ^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_full_list`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `i`
[INFO] [stdout]   --> src/mrd.rs:80:10
[INFO] [stdout]    |
[INFO] [stdout] 80 |     for (i, entry) in vcf_itr.records().enumerate() {
[INFO] [stdout]    |          ^ help: if this is intentional, prefix it with an underscore: `_i`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `p`
[INFO] [stdout]    --> src/mrd.rs:293:65
[INFO] [stdout]     |
[INFO] [stdout] 293 | ...                   .filter(| &(ref _i, _v, p)| { ! config.remove_duplicates || ! _i.is_duplicate() }) //rmdup
[INFO] [stdout]     |                                               ^ help: if this is intentional, prefix it with an underscore: `_p`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]   --> src/main.rs:64:9
[INFO] [stdout]    |
[INFO] [stdout] 64 |     let mut full_list: Vec<rust_htslib::bcf::Record> = vec![];
[INFO] [stdout]    |         ----^^^^^^^^^
[INFO] [stdout]    |         |
[INFO] [stdout]    |         help: remove this `mut`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_mut)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `p`
[INFO] [stdout]    --> src/mrd.rs:146:37
[INFO] [stdout]     |
[INFO] [stdout] 146 |             .filter(| &(ref _i, _v, p)| { ! config.remove_duplicates || ! _i.is_duplicate() }) //rmdup
[INFO] [stdout]     |                                     ^ help: if this is intentional, prefix it with an underscore: `_p`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `full_list`
[INFO] [stdout]   --> src/mrd.rs:72:9
[INFO] [stdout]    |
[INFO] [stdout] 72 |     let mut full_list: Vec<rust_htslib::bcf::Record> = vec![];
[INFO] [stdout]    |         ^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_full_list`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `i`
[INFO] [stdout]   --> src/mrd.rs:80:10
[INFO] [stdout]    |
[INFO] [stdout] 80 |     for (i, entry) in vcf_itr.records().enumerate() {
[INFO] [stdout]    |          ^ help: if this is intentional, prefix it with an underscore: `_i`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `p`
[INFO] [stdout]    --> src/mrd.rs:293:65
[INFO] [stdout]     |
[INFO] [stdout] 293 | ...                   .filter(| &(ref _i, _v, p)| { ! config.remove_duplicates || ! _i.is_duplicate() }) //rmdup
[INFO] [stdout]     |                                               ^ help: if this is intentional, prefix it with an underscore: `_p`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]   --> src/mrd.rs:72:9
[INFO] [stdout]    |
[INFO] [stdout] 72 |     let mut full_list: Vec<rust_htslib::bcf::Record> = vec![];
[INFO] [stdout]    |         ----^^^^^^^^^
[INFO] [stdout]    |         |
[INFO] [stdout]    |         help: remove this `mut`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_mut)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `run`
[INFO] [stdout]    --> src/main.rs:236:4
[INFO] [stdout]     |
[INFO] [stdout] 236 | fn run(config: Config){ 
[INFO] [stdout]     |    ^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `p`
[INFO] [stdout]    --> src/main.rs:138:37
[INFO] [stdout]     |
[INFO] [stdout] 138 |             .filter(| &(ref _i, _v, p)| { ! config.remove_duplicates || ! _i.is_duplicate() }) //rmdup
[INFO] [stdout]     |                                     ^ help: if this is intentional, prefix it with an underscore: `_p`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `full_list`
[INFO] [stdout]   --> src/main.rs:64:9
[INFO] [stdout]    |
[INFO] [stdout] 64 |     let mut full_list: Vec<rust_htslib::bcf::Record> = vec![];
[INFO] [stdout]    |         ^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_full_list`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `i`
[INFO] [stdout]   --> src/main.rs:72:10
[INFO] [stdout]    |
[INFO] [stdout] 72 |     for (i, entry) in vcf_itr.records().enumerate() {
[INFO] [stdout]    |          ^ help: if this is intentional, prefix it with an underscore: `_i`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `p`
[INFO] [stdout]    --> src/main.rs:294:65
[INFO] [stdout]     |
[INFO] [stdout] 294 | ...                   .filter(| &(ref _i, _v, p)| { ! config.remove_duplicates || ! _i.is_duplicate() }) //rmdup
[INFO] [stdout]     |                                               ^ help: if this is intentional, prefix it with an underscore: `_p`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `run`
[INFO] [stdout]    --> src/mrd.rs:235:4
[INFO] [stdout]     |
[INFO] [stdout] 235 | fn run(config: Config){ 
[INFO] [stdout]     |    ^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `std::result::Result` that must be used
[INFO] [stdout]    --> src/main.rs:170:17
[INFO] [stdout]     |
[INFO] [stdout] 170 |                 item.push_aux( "B0".as_bytes(), &Aux::Integer(_vcf.pos as i64) );
[INFO] [stdout]     |                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_must_use)]` on by default
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `std::result::Result` that must be used
[INFO] [stdout]    --> src/main.rs:171:17
[INFO] [stdout]     |
[INFO] [stdout] 171 |                 item.push_aux( "B1".as_bytes(), &Aux::Char(_vcf.ref_b) );
[INFO] [stdout]     |                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `std::result::Result` that must be used
[INFO] [stdout]    --> src/main.rs:172:17
[INFO] [stdout]     |
[INFO] [stdout] 172 |                 item.push_aux( "B2".as_bytes(), &Aux::Char(_vcf.alt_b) );
[INFO] [stdout]     |                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `std::result::Result` that must be used
[INFO] [stdout]    --> src/main.rs:173:17
[INFO] [stdout]     |
[INFO] [stdout] 173 |                 item.push_aux( "B3".as_bytes(), &Aux::Integer(_pir as i64) );
[INFO] [stdout]     |                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `std::result::Result` that must be used
[INFO] [stdout]    --> src/main.rs:187:25
[INFO] [stdout]     |
[INFO] [stdout] 187 | / ...   writeln!(raw_stats_fd,"{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}",  
[INFO] [stdout] 188 | | ...                std::str::from_utf8(vcf_head.rid2name(_vcf.chrm)).unwrap(), _vcf.pos , _vcf.ref_b as char, _vcf.alt_b as char,  // hea...
[INFO] [stdout] 189 | | ...                std::str::from_utf8( &item.qname()).unwrap(),                 // 
[INFO] [stdout] 190 | | ...                bamreadfilt::mrbq(&item), &item.qual()[_pir] , item.mapq(), _pir, item.insert_size() , item.is_reverse() as i32,
[INFO] [stdout] 191 | | ...                item.is_first_in_template() as i32,
[INFO] [stdout] 192 | | ...                std::str::from_utf8(another_test).unwrap(), 
[INFO] [stdout] 193 | | ...   );
[INFO] [stdout]     | |________^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout]     = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `std::result::Result` that must be used
[INFO] [stdout]    --> src/main.rs:196:25
[INFO] [stdout]     |
[INFO] [stdout] 196 | / ...   writeln!(raw_stats_fd,"{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}",  
[INFO] [stdout] 197 | | ...                std::str::from_utf8(vcf_head.rid2name(_vcf.chrm)).unwrap(), _vcf.pos , _vcf.ref_b as char, _vcf.alt_b as char,  // hea...
[INFO] [stdout] 198 | | ...                std::str::from_utf8( &item.qname()).unwrap(),                 // 
[INFO] [stdout] 199 | | ...                bamreadfilt::mrbq(&item), &item.qual()[_pir] , item.mapq(), _pir, item.insert_size(), item.is_reverse() as i32,
[INFO] [stdout] 200 | | ...                item.is_first_in_template() as i32,
[INFO] [stdout] 201 | | ...   );
[INFO] [stdout]     | |________^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout]     = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `std::result::Result` that must be used
[INFO] [stdout]    --> src/main.rs:322:9
[INFO] [stdout]     |
[INFO] [stdout] 322 |         item.push_aux( "B0".as_bytes(), &Aux::Integer(_vcf.pos as i64) );
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `std::result::Result` that must be used
[INFO] [stdout]    --> src/main.rs:323:9
[INFO] [stdout]     |
[INFO] [stdout] 323 |         item.push_aux( "B1".as_bytes(), &Aux::Char(_vcf.ref_b) );
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `std::result::Result` that must be used
[INFO] [stdout]    --> src/main.rs:324:9
[INFO] [stdout]     |
[INFO] [stdout] 324 |         item.push_aux( "B2".as_bytes(), &Aux::Char(_vcf.alt_b) );
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `std::result::Result` that must be used
[INFO] [stdout]    --> src/main.rs:325:9
[INFO] [stdout]     |
[INFO] [stdout] 325 |         item.push_aux( "B3".as_bytes(), &Aux::Integer(_pir as i64) );
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `std::result::Result` that must be used
[INFO] [stdout]    --> src/mrd.rs:170:17
[INFO] [stdout]     |
[INFO] [stdout] 170 |                 item.push_aux( "B0".as_bytes(), &Aux::Integer(_vcf.pos as i64) );
[INFO] [stdout]     |                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_must_use)]` on by default
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `std::result::Result` that must be used
[INFO] [stdout]    --> src/mrd.rs:171:17
[INFO] [stdout]     |
[INFO] [stdout] 171 |                 item.push_aux( "B1".as_bytes(), &Aux::Char(_vcf.ref_b) );
[INFO] [stdout]     |                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `std::result::Result` that must be used
[INFO] [stdout]    --> src/mrd.rs:172:17
[INFO] [stdout]     |
[INFO] [stdout] 172 |                 item.push_aux( "B2".as_bytes(), &Aux::Char(_vcf.alt_b) );
[INFO] [stdout]     |                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `std::result::Result` that must be used
[INFO] [stdout]    --> src/mrd.rs:173:17
[INFO] [stdout]     |
[INFO] [stdout] 173 |                 item.push_aux( "B3".as_bytes(), &Aux::Integer(_pir as i64) );
[INFO] [stdout]     |                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `std::result::Result` that must be used
[INFO] [stdout]    --> src/mrd.rs:187:25
[INFO] [stdout]     |
[INFO] [stdout] 187 | / ...   writeln!(raw_stats_fd,"{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}",  
[INFO] [stdout] 188 | | ...                std::str::from_utf8(vcf_head.rid2name(_vcf.chrm)).unwrap(), _vcf.pos , _vcf.ref_b as char, item.seq()[_pir] as char,  ...
[INFO] [stdout] 189 | | ...                std::str::from_utf8( &item.qname()).unwrap(),                 // 
[INFO] [stdout] 190 | | ...                bamreadfilt::mrbq(&item), &item.qual()[_pir] , item.mapq(), _pir, item.insert_size() , item.is_reverse() as i32,
[INFO] [stdout] 191 | | ...                item.is_first_in_template() as i32,
[INFO] [stdout] 192 | | ...                std::str::from_utf8(another_test).unwrap(), 
[INFO] [stdout] 193 | | ...   );
[INFO] [stdout]     | |________^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout]     = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `std::result::Result` that must be used
[INFO] [stdout]    --> src/mrd.rs:196:25
[INFO] [stdout]     |
[INFO] [stdout] 196 | / ...   writeln!(raw_stats_fd,"{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}",  
[INFO] [stdout] 197 | | ...                std::str::from_utf8(vcf_head.rid2name(_vcf.chrm)).unwrap(), _vcf.pos , _vcf.ref_b as char, item.seq()[_pir] as char,  ...
[INFO] [stdout] 198 | | ...                std::str::from_utf8( &item.qname()).unwrap(),                 // 
[INFO] [stdout] 199 | | ...                bamreadfilt::mrbq(&item), &item.qual()[_pir] , item.mapq(), _pir, item.insert_size(), item.is_reverse() as i32,
[INFO] [stdout] 200 | | ...                item.is_first_in_template() as i32,
[INFO] [stdout] 201 | | ...   );
[INFO] [stdout]     | |________^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout]     = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `std::result::Result` that must be used
[INFO] [stdout]    --> src/mrd.rs:318:9
[INFO] [stdout]     |
[INFO] [stdout] 318 |         item.push_aux( "B0".as_bytes(), &Aux::Integer(_vcf.pos as i64) );
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `std::result::Result` that must be used
[INFO] [stdout]    --> src/mrd.rs:319:9
[INFO] [stdout]     |
[INFO] [stdout] 319 |         item.push_aux( "B1".as_bytes(), &Aux::Char(_vcf.ref_b) );
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `std::result::Result` that must be used
[INFO] [stdout]    --> src/mrd.rs:320:9
[INFO] [stdout]     |
[INFO] [stdout] 320 |         item.push_aux( "B2".as_bytes(), &Aux::Char(_vcf.alt_b) );
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `std::result::Result` that must be used
[INFO] [stdout]    --> src/mrd.rs:321:9
[INFO] [stdout]     |
[INFO] [stdout] 321 |         item.push_aux( "B3".as_bytes(), &Aux::Integer(_pir as i64) );
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]   --> src/mrd.rs:72:9
[INFO] [stdout]    |
[INFO] [stdout] 72 |     let mut full_list: Vec<rust_htslib::bcf::Record> = vec![];
[INFO] [stdout]    |         ----^^^^^^^^^
[INFO] [stdout]    |         |
[INFO] [stdout]    |         help: remove this `mut`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_mut)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 18 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 16 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]   --> src/main.rs:64:9
[INFO] [stdout]    |
[INFO] [stdout] 64 |     let mut full_list: Vec<rust_htslib::bcf::Record> = vec![];
[INFO] [stdout]    |         ----^^^^^^^^^
[INFO] [stdout]    |         |
[INFO] [stdout]    |         help: remove this `mut`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_mut)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `run`
[INFO] [stdout]    --> src/mrd.rs:235:4
[INFO] [stdout]     |
[INFO] [stdout] 235 | fn run(config: Config){ 
[INFO] [stdout]     |    ^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `run`
[INFO] [stdout]    --> src/main.rs:236:4
[INFO] [stdout]     |
[INFO] [stdout] 236 | fn run(config: Config){ 
[INFO] [stdout]     |    ^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `std::result::Result` that must be used
[INFO] [stdout]    --> src/mrd.rs:170:17
[INFO] [stdout]     |
[INFO] [stdout] 170 |                 item.push_aux( "B0".as_bytes(), &Aux::Integer(_vcf.pos as i64) );
[INFO] [stdout]     |                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_must_use)]` on by default
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `std::result::Result` that must be used
[INFO] [stdout]    --> src/mrd.rs:171:17
[INFO] [stdout]     |
[INFO] [stdout] 171 |                 item.push_aux( "B1".as_bytes(), &Aux::Char(_vcf.ref_b) );
[INFO] [stdout]     |                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `std::result::Result` that must be used
[INFO] [stdout]    --> src/mrd.rs:172:17
[INFO] [stdout]     |
[INFO] [stdout] 172 |                 item.push_aux( "B2".as_bytes(), &Aux::Char(_vcf.alt_b) );
[INFO] [stdout]     |                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `std::result::Result` that must be used
[INFO] [stdout]    --> src/mrd.rs:173:17
[INFO] [stdout]     |
[INFO] [stdout] 173 |                 item.push_aux( "B3".as_bytes(), &Aux::Integer(_pir as i64) );
[INFO] [stdout]     |                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `std::result::Result` that must be used
[INFO] [stdout]    --> src/mrd.rs:187:25
[INFO] [stdout]     |
[INFO] [stdout] 187 | / ...   writeln!(raw_stats_fd,"{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}",  
[INFO] [stdout] 188 | | ...                std::str::from_utf8(vcf_head.rid2name(_vcf.chrm)).unwrap(), _vcf.pos , _vcf.ref_b as char, item.seq()[_pir] as char,  ...
[INFO] [stdout] 189 | | ...                std::str::from_utf8( &item.qname()).unwrap(),                 // 
[INFO] [stdout] 190 | | ...                bamreadfilt::mrbq(&item), &item.qual()[_pir] , item.mapq(), _pir, item.insert_size() , item.is_reverse() as i32,
[INFO] [stdout] 191 | | ...                item.is_first_in_template() as i32,
[INFO] [stdout] 192 | | ...                std::str::from_utf8(another_test).unwrap(), 
[INFO] [stdout] 193 | | ...   );
[INFO] [stdout]     | |________^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout]     = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `std::result::Result` that must be used
[INFO] [stdout]    --> src/mrd.rs:196:25
[INFO] [stdout]     |
[INFO] [stdout] 196 | / ...   writeln!(raw_stats_fd,"{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}",  
[INFO] [stdout] 197 | | ...                std::str::from_utf8(vcf_head.rid2name(_vcf.chrm)).unwrap(), _vcf.pos , _vcf.ref_b as char, item.seq()[_pir] as char,  ...
[INFO] [stdout] 198 | | ...                std::str::from_utf8( &item.qname()).unwrap(),                 // 
[INFO] [stdout] 199 | | ...                bamreadfilt::mrbq(&item), &item.qual()[_pir] , item.mapq(), _pir, item.insert_size(), item.is_reverse() as i32,
[INFO] [stdout] 200 | | ...                item.is_first_in_template() as i32,
[INFO] [stdout] 201 | | ...   );
[INFO] [stdout]     | |________^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout]     = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `std::result::Result` that must be used
[INFO] [stdout]    --> src/mrd.rs:318:9
[INFO] [stdout]     |
[INFO] [stdout] 318 |         item.push_aux( "B0".as_bytes(), &Aux::Integer(_vcf.pos as i64) );
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `std::result::Result` that must be used
[INFO] [stdout]    --> src/mrd.rs:319:9
[INFO] [stdout]     |
[INFO] [stdout] 319 |         item.push_aux( "B1".as_bytes(), &Aux::Char(_vcf.ref_b) );
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `std::result::Result` that must be used
[INFO] [stdout]    --> src/mrd.rs:320:9
[INFO] [stdout]     |
[INFO] [stdout] 320 |         item.push_aux( "B2".as_bytes(), &Aux::Char(_vcf.alt_b) );
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `std::result::Result` that must be used
[INFO] [stdout]    --> src/mrd.rs:321:9
[INFO] [stdout]     |
[INFO] [stdout] 321 |         item.push_aux( "B3".as_bytes(), &Aux::Integer(_pir as i64) );
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 18 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `std::result::Result` that must be used
[INFO] [stdout]    --> src/main.rs:170:17
[INFO] [stdout]     |
[INFO] [stdout] 170 |                 item.push_aux( "B0".as_bytes(), &Aux::Integer(_vcf.pos as i64) );
[INFO] [stdout]     |                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_must_use)]` on by default
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `std::result::Result` that must be used
[INFO] [stdout]    --> src/main.rs:171:17
[INFO] [stdout]     |
[INFO] [stdout] 171 |                 item.push_aux( "B1".as_bytes(), &Aux::Char(_vcf.ref_b) );
[INFO] [stdout]     |                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `std::result::Result` that must be used
[INFO] [stdout]    --> src/main.rs:172:17
[INFO] [stdout]     |
[INFO] [stdout] 172 |                 item.push_aux( "B2".as_bytes(), &Aux::Char(_vcf.alt_b) );
[INFO] [stdout]     |                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `std::result::Result` that must be used
[INFO] [stdout]    --> src/main.rs:173:17
[INFO] [stdout]     |
[INFO] [stdout] 173 |                 item.push_aux( "B3".as_bytes(), &Aux::Integer(_pir as i64) );
[INFO] [stdout]     |                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `std::result::Result` that must be used
[INFO] [stdout]    --> src/main.rs:187:25
[INFO] [stdout]     |
[INFO] [stdout] 187 | / ...   writeln!(raw_stats_fd,"{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}",  
[INFO] [stdout] 188 | | ...                std::str::from_utf8(vcf_head.rid2name(_vcf.chrm)).unwrap(), _vcf.pos , _vcf.ref_b as char, _vcf.alt_b as char,  // hea...
[INFO] [stdout] 189 | | ...                std::str::from_utf8( &item.qname()).unwrap(),                 // 
[INFO] [stdout] 190 | | ...                bamreadfilt::mrbq(&item), &item.qual()[_pir] , item.mapq(), _pir, item.insert_size() , item.is_reverse() as i32,
[INFO] [stdout] 191 | | ...                item.is_first_in_template() as i32,
[INFO] [stdout] 192 | | ...                std::str::from_utf8(another_test).unwrap(), 
[INFO] [stdout] 193 | | ...   );
[INFO] [stdout]     | |________^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout]     = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `std::result::Result` that must be used
[INFO] [stdout]    --> src/main.rs:196:25
[INFO] [stdout]     |
[INFO] [stdout] 196 | / ...   writeln!(raw_stats_fd,"{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}",  
[INFO] [stdout] 197 | | ...                std::str::from_utf8(vcf_head.rid2name(_vcf.chrm)).unwrap(), _vcf.pos , _vcf.ref_b as char, _vcf.alt_b as char,  // hea...
[INFO] [stdout] 198 | | ...                std::str::from_utf8( &item.qname()).unwrap(),                 // 
[INFO] [stdout] 199 | | ...                bamreadfilt::mrbq(&item), &item.qual()[_pir] , item.mapq(), _pir, item.insert_size(), item.is_reverse() as i32,
[INFO] [stdout] 200 | | ...                item.is_first_in_template() as i32,
[INFO] [stdout] 201 | | ...   );
[INFO] [stdout]     | |________^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout]     = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `std::result::Result` that must be used
[INFO] [stdout]    --> src/main.rs:322:9
[INFO] [stdout]     |
[INFO] [stdout] 322 |         item.push_aux( "B0".as_bytes(), &Aux::Integer(_vcf.pos as i64) );
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `std::result::Result` that must be used
[INFO] [stdout]    --> src/main.rs:323:9
[INFO] [stdout]     |
[INFO] [stdout] 323 |         item.push_aux( "B1".as_bytes(), &Aux::Char(_vcf.ref_b) );
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `std::result::Result` that must be used
[INFO] [stdout]    --> src/main.rs:324:9
[INFO] [stdout]     |
[INFO] [stdout] 324 |         item.push_aux( "B2".as_bytes(), &Aux::Char(_vcf.alt_b) );
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `std::result::Result` that must be used
[INFO] [stdout]    --> src/main.rs:325:9
[INFO] [stdout]     |
[INFO] [stdout] 325 |         item.push_aux( "B3".as_bytes(), &Aux::Integer(_pir as i64) );
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 16 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: build failed
[INFO] running `Command { std: "docker" "inspect" "ae9f10471ca49c19731623cab5d54309a5f4ce3d40d9fa3892fcc88a1060c7cc", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ae9f10471ca49c19731623cab5d54309a5f4ce3d40d9fa3892fcc88a1060c7cc", kill_on_drop: false }`
[INFO] [stdout] ae9f10471ca49c19731623cab5d54309a5f4ce3d40d9fa3892fcc88a1060c7cc