[INFO] cloning repository https://github.com/clemson-cal/app-sedov [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/clemson-cal/app-sedov" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclemson-cal%2Fapp-sedov", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclemson-cal%2Fapp-sedov'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 9161d18035ebbc4241380e562386555136849267 [INFO] checking clemson-cal/app-sedov against master#a609fb45efad59dfd459c76e50899be9f0583b5a for pr-80579 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclemson-cal%2Fapp-sedov" "/workspace/builds/worker-7/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-7/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/clemson-cal/app-sedov on toolchain a609fb45efad59dfd459c76e50899be9f0583b5a [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a609fb45efad59dfd459c76e50899be9f0583b5a" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/clemson-cal/app-sedov [INFO] finished tweaking git repo https://github.com/clemson-cal/app-sedov [INFO] tweaked toml for git repo https://github.com/clemson-cal/app-sedov written to /workspace/builds/worker-7/source/Cargo.toml [INFO] crate git repo https://github.com/clemson-cal/app-sedov already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a609fb45efad59dfd459c76e50899be9f0583b5a" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c8ac004eab7d63a0ad09a2dde3d3353ba464f767bee4de425dc8f74c46a1905e" "/opt/rustwide/cargo-home/bin/cargo" "+a609fb45efad59dfd459c76e50899be9f0583b5a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] af4ee373f1fb0fd8ade0f65adfe93d105b0323f432534c2c7eeb148f8c758faf [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "af4ee373f1fb0fd8ade0f65adfe93d105b0323f432534c2c7eeb148f8c758faf", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "af4ee373f1fb0fd8ade0f65adfe93d105b0323f432534c2c7eeb148f8c758faf", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "af4ee373f1fb0fd8ade0f65adfe93d105b0323f432534c2c7eeb148f8c758faf", kill_on_drop: false }` [INFO] [stdout] af4ee373f1fb0fd8ade0f65adfe93d105b0323f432534c2c7eeb148f8c758faf [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c8ac004eab7d63a0ad09a2dde3d3353ba464f767bee4de425dc8f74c46a1905e" "/opt/rustwide/cargo-home/bin/cargo" "+a609fb45efad59dfd459c76e50899be9f0583b5a" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 2b87ebb1e71801b3042e879b66e8e88ff8e30d0d1a57bd5e8bdec9738423533e [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "2b87ebb1e71801b3042e879b66e8e88ff8e30d0d1a57bd5e8bdec9738423533e", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling proc-macro2 v1.0.24 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling syn v1.0.45 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling version_check v0.9.2 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling regex-syntax v0.6.20 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Checking smallvec v1.4.2 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Compiling unicode-segmentation v1.6.0 [INFO] [stderr] Checking ascii v1.0.0 [INFO] [stderr] Compiling hdf5 v0.7.0 [INFO] [stderr] Checking os_str_bytes v2.3.2 [INFO] [stderr] Checking strsim v0.10.0 [INFO] [stderr] Checking termcolor v1.1.0 [INFO] [stderr] Checking glob v0.3.0 [INFO] [stderr] Checking hydro-euler v0.1.0 (https://github.com/clemson-cal/hydro-euler#13f16f2d) [INFO] [stderr] Compiling libloading v0.6.4 [INFO] [stderr] Checking lock_api v0.3.4 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Checking textwrap v0.12.1 [INFO] [stderr] Checking parking_lot_core v0.7.2 [INFO] [stderr] Checking hdf5-types v0.7.0 [INFO] [stderr] Compiling heck v0.3.1 [INFO] [stderr] Checking parking_lot v0.10.2 [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Compiling num-integer v0.1.43 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling num-bigint v0.3.0 [INFO] [stderr] Compiling num-rational v0.3.0 [INFO] [stderr] Compiling num-iter v0.1.41 [INFO] [stderr] Compiling indexmap v1.6.0 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling aho-corasick v0.7.14 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Checking num-complex v0.3.0 [INFO] [stderr] Checking ndarray v0.13.1 [INFO] [stderr] Compiling regex v1.4.1 [INFO] [stderr] Checking num v0.3.0 [INFO] [stderr] Checking godunov-core v0.1.0 (https://github.com/clemson-cal/godunov-core#e3ddfe50) [INFO] [stderr] Compiling hdf5-sys v0.7.0 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-2fc174a7f16eee92/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55ce52866177 - std::backtrace_rs::backtrace::libunwind::trace::h746c3e9529d524bc [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x55ce52866177 - std::backtrace_rs::backtrace::trace_unsynchronized::h84373278bfb39e0c [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55ce52866177 - std::sys_common::backtrace::_print_fmt::h517324efde750597 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55ce52866177 - ::fmt::hf594ab77fac89284 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55ce52881eac - core::fmt::write::h3868db8542c90941 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/core/src/fmt/mod.rs:1078:17 [INFO] [stderr] 5: 0x55ce52862b62 - std::io::Write::write_fmt::h3f6656f045fa877f [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/io/mod.rs:1519:15 [INFO] [stderr] 6: 0x55ce52868205 - std::sys_common::backtrace::_print::hda7655c057c24dcc [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55ce52868205 - std::sys_common::backtrace::print::h546a6c8431d46287 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55ce52868205 - std::panicking::default_hook::{{closure}}::h006dd083853faf51 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x55ce52867d63 - std::panicking::default_hook::hf0f9afb1017317fc [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x55ce528689a1 - std::panicking::rust_panic_with_hook::hb7a19826c029b1d6 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x55ce527adc7e - std::panicking::begin_panic::{{closure}}::h29198800b99b99cc [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/panicking.rs:520:9 [INFO] [stderr] 12: 0x55ce5276d4d9 - std::sys_common::backtrace::__rust_end_short_backtrace::h1a1518782b6dbf4b [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55ce527adbab - std::panicking::begin_panic::h5d8008c01e7a044e [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/panicking.rs:519:12 [INFO] [stderr] 14: 0x55ce5264015b - build_script_build::LibrarySearcher::try_locate_hdf5_library::h0ee934170cc36889 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] 15: 0x55ce52641a33 - build_script_build::main::h9046d0c67bfb3330 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647:9 [INFO] [stderr] 16: 0x55ce5264485b - core::ops::function::FnOnce::call_once::h690f1efe08ee859c [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x55ce526465fe - std::sys_common::backtrace::__rust_begin_short_backtrace::hfde398afc50ac167 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x55ce5264df21 - std::rt::lang_start::{{closure}}::h47a121095a162c67 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/rt.rs:66:18 [INFO] [stderr] 19: 0x55ce52868dc7 - core::ops::function::impls:: for &F>::call_once::h54c39b9b8451875a [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x55ce52868dc7 - std::panicking::try::do_call::hcdfba51a06e21b42 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/panicking.rs:379:40 [INFO] [stderr] 21: 0x55ce52868dc7 - std::panicking::try::h77386c66889b2066 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/panicking.rs:343:19 [INFO] [stderr] 22: 0x55ce52868dc7 - std::panic::catch_unwind::hc55a0d8aadca44f0 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/panic.rs:396:14 [INFO] [stderr] 23: 0x55ce52868dc7 - std::rt::lang_start_internal::h97dca9624db2aa85 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/rt.rs:51:25 [INFO] [stderr] 24: 0x55ce5264def7 - std::rt::lang_start::hbe40c49b3ec6027f [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/rt.rs:65:5 [INFO] [stderr] 25: 0x55ce5264307a - main [INFO] [stderr] 26: 0x7f8ef25790b3 - __libc_start_main [INFO] [stderr] 27: 0x55ce5263b0be - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "2b87ebb1e71801b3042e879b66e8e88ff8e30d0d1a57bd5e8bdec9738423533e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2b87ebb1e71801b3042e879b66e8e88ff8e30d0d1a57bd5e8bdec9738423533e", kill_on_drop: false }` [INFO] [stdout] 2b87ebb1e71801b3042e879b66e8e88ff8e30d0d1a57bd5e8bdec9738423533e