[INFO] cloning repository https://github.com/brainstorm/htsget-indexer
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/brainstorm/htsget-indexer" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbrainstorm%2Fhtsget-indexer", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbrainstorm%2Fhtsget-indexer'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 182650b6518cdeefad31ab1ca4aa5cb1666e0ab2
[INFO] checking brainstorm/htsget-indexer against master#a609fb45efad59dfd459c76e50899be9f0583b5a for pr-80579
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbrainstorm%2Fhtsget-indexer" "/workspace/builds/worker-3/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-3/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/brainstorm/htsget-indexer on toolchain a609fb45efad59dfd459c76e50899be9f0583b5a
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a609fb45efad59dfd459c76e50899be9f0583b5a" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/brainstorm/htsget-indexer
[INFO] finished tweaking git repo https://github.com/brainstorm/htsget-indexer
[INFO] tweaked toml for git repo https://github.com/brainstorm/htsget-indexer written to /workspace/builds/worker-3/source/Cargo.toml
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a609fb45efad59dfd459c76e50899be9f0583b5a" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a609fb45efad59dfd459c76e50899be9f0583b5a" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+a609fb45efad59dfd459c76e50899be9f0583b5a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] ec8fb3dce502bdb1dca798f1191d082349ca0e5bc864302575d93e7dc93a265b
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "ec8fb3dce502bdb1dca798f1191d082349ca0e5bc864302575d93e7dc93a265b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "ec8fb3dce502bdb1dca798f1191d082349ca0e5bc864302575d93e7dc93a265b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ec8fb3dce502bdb1dca798f1191d082349ca0e5bc864302575d93e7dc93a265b", kill_on_drop: false }`
[INFO] [stdout] ec8fb3dce502bdb1dca798f1191d082349ca0e5bc864302575d93e7dc93a265b
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+a609fb45efad59dfd459c76e50899be9f0583b5a" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] b6bed80b025b3b485b1c9075107035399e8ccbb6907b8ba85787cc1f8ea59c31
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "b6bed80b025b3b485b1c9075107035399e8ccbb6907b8ba85787cc1f8ea59c31", kill_on_drop: false }`
[INFO] [stderr]    Compiling cc v1.0.66
[INFO] [stderr]    Compiling pkg-config v0.3.19
[INFO] [stderr]    Compiling syn v1.0.57
[INFO] [stderr]    Compiling bitflags v1.2.1
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling unicode-width v0.1.8
[INFO] [stderr]    Compiling serde_derive v1.0.118
[INFO] [stderr]    Compiling regex-syntax v0.6.21
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling strsim v0.8.0
[INFO] [stderr]    Compiling syn v0.15.44
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]    Compiling termcolor v1.1.2
[INFO] [stderr]    Compiling serde v1.0.118
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling bindgen v0.51.1
[INFO] [stderr]    Compiling ansi_term v0.11.0
[INFO] [stderr]    Compiling peeking_take_while v0.1.2
[INFO] [stderr]    Compiling shlex v0.1.1
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]     Checking itoa v0.4.7
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]    Compiling nom v4.2.3
[INFO] [stderr]    Compiling clang-sys v0.28.1
[INFO] [stderr]    Compiling thread_local v1.0.1
[INFO] [stderr]    Compiling miniz_oxide v0.4.3
[INFO] [stderr]    Compiling humantime v1.3.0
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking addr2line v0.14.1
[INFO] [stderr]     Checking form_urlencoded v1.0.0
[INFO] [stderr]     Checking itertools v0.8.2
[INFO] [stderr]    Compiling libc v0.2.81
[INFO] [stderr]    Compiling memchr v2.3.4
[INFO] [stderr]    Compiling log v0.4.11
[INFO] [stderr]     Checking idna v0.2.0
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling aho-corasick v0.7.15
[INFO] [stderr]    Compiling libloading v0.5.2
[INFO] [stderr]    Compiling libz-sys v1.1.2
[INFO] [stderr]    Compiling bzip2-sys v0.1.9+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.17
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling which v3.1.1
[INFO] [stderr]     Checking url v2.2.0
[INFO] [stderr]    Compiling clap v2.33.3
[INFO] [stderr]     Checking backtrace v0.3.55
[INFO] [stderr]    Compiling cexpr v0.3.6
[INFO] [stderr]    Compiling regex v1.4.2
[INFO] [stderr]    Compiling env_logger v0.6.2
[INFO] [stderr]    Compiling snafu-derive v0.5.0
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling snafu-derive v0.6.10
[INFO] [stderr]     Checking snafu v0.5.0
[INFO] [stderr]     Checking snafu v0.6.10
[INFO] [stderr]    Compiling rust-htslib v0.26.1
[INFO] [stderr]     Checking bio-types v0.7.0
[INFO] [stderr]     Checking serde_json v1.0.61
[INFO] [stderr]     Checking htsget-indexer v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 2m 11s
[INFO] running `Command { std: "docker" "inspect" "b6bed80b025b3b485b1c9075107035399e8ccbb6907b8ba85787cc1f8ea59c31", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b6bed80b025b3b485b1c9075107035399e8ccbb6907b8ba85787cc1f8ea59c31", kill_on_drop: false }`
[INFO] [stdout] b6bed80b025b3b485b1c9075107035399e8ccbb6907b8ba85787cc1f8ea59c31