[INFO] cloning repository https://github.com/Tehforsch/rbob [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Tehforsch/rbob" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTehforsch%2Frbob", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTehforsch%2Frbob'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] bb24973f16ceee5341bc73aaa0765a566277233c [INFO] checking Tehforsch/rbob against master#a609fb45efad59dfd459c76e50899be9f0583b5a for pr-80579 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTehforsch%2Frbob" "/workspace/builds/worker-4/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-4/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/Tehforsch/rbob on toolchain a609fb45efad59dfd459c76e50899be9f0583b5a [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a609fb45efad59dfd459c76e50899be9f0583b5a" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/Tehforsch/rbob [INFO] finished tweaking git repo https://github.com/Tehforsch/rbob [INFO] tweaked toml for git repo https://github.com/Tehforsch/rbob written to /workspace/builds/worker-4/source/Cargo.toml [INFO] crate git repo https://github.com/Tehforsch/rbob already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a609fb45efad59dfd459c76e50899be9f0583b5a" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c8ac004eab7d63a0ad09a2dde3d3353ba464f767bee4de425dc8f74c46a1905e" "/opt/rustwide/cargo-home/bin/cargo" "+a609fb45efad59dfd459c76e50899be9f0583b5a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] cecce7136a4af46b13f3874269a3bde9caa2bfd11a5be4b9e2b94a7b073647cd [INFO] running `Command { std: "docker" "start" "-a" "cecce7136a4af46b13f3874269a3bde9caa2bfd11a5be4b9e2b94a7b073647cd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "cecce7136a4af46b13f3874269a3bde9caa2bfd11a5be4b9e2b94a7b073647cd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "cecce7136a4af46b13f3874269a3bde9caa2bfd11a5be4b9e2b94a7b073647cd", kill_on_drop: false }` [INFO] [stdout] cecce7136a4af46b13f3874269a3bde9caa2bfd11a5be4b9e2b94a7b073647cd [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c8ac004eab7d63a0ad09a2dde3d3353ba464f767bee4de425dc8f74c46a1905e" "/opt/rustwide/cargo-home/bin/cargo" "+a609fb45efad59dfd459c76e50899be9f0583b5a" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 12f6d8e056ba094d86401aa002d477f7ee328fc30824abaf1347687b7c4cf180 [INFO] running `Command { std: "docker" "start" "-a" "12f6d8e056ba094d86401aa002d477f7ee328fc30824abaf1347687b7c4cf180", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling proc-macro2 v1.0.24 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling syn v1.0.53 [INFO] [stderr] Compiling version_check v0.9.2 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling regex-syntax v0.6.21 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling serde_derive v1.0.118 [INFO] [stderr] Compiling serde v1.0.118 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Compiling typenum v1.12.0 [INFO] [stderr] Checking smallvec v1.5.1 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Compiling unicode-segmentation v1.7.1 [INFO] [stderr] Checking unicode-width v0.1.8 [INFO] [stderr] Compiling anyhow v1.0.34 [INFO] [stderr] Compiling hdf5 v0.7.0 [INFO] [stderr] Checking ascii v1.0.0 [INFO] [stderr] Checking linked-hash-map v0.5.3 [INFO] [stderr] Checking hashbrown v0.9.1 [INFO] [stderr] Checking os_str_bytes v2.4.0 [INFO] [stderr] Checking dtoa v0.4.6 [INFO] [stderr] Checking either v1.6.1 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking strfmt v0.1.6 [INFO] [stderr] Checking remove_dir_all v0.5.3 [INFO] [stderr] Checking same-file v1.0.6 [INFO] [stderr] Checking dissimilar v1.0.2 [INFO] [stderr] Compiling libloading v0.6.6 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Checking lock_api v0.3.4 [INFO] [stderr] Checking matrixmultiply v0.2.4 [INFO] [stderr] Checking textwrap v0.12.1 [INFO] [stderr] Checking yaml-rust v0.4.4 [INFO] [stderr] Checking itertools v0.9.0 [INFO] [stderr] Compiling heck v0.3.1 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling indexmap v1.6.0 [INFO] [stderr] Checking walkdir v2.3.1 [INFO] [stderr] Checking parking_lot_core v0.7.2 [INFO] [stderr] Checking hdf5-types v0.7.0 [INFO] [stderr] Checking rand v0.4.6 [INFO] [stderr] Compiling aho-corasick v0.7.15 [INFO] [stderr] Checking parking_lot v0.10.2 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Checking tempdir v0.3.7 [INFO] [stderr] Checking uom v0.30.0 [INFO] [stderr] Compiling regex v1.4.2 [INFO] [stderr] Compiling hdf5-sys v0.7.0 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-4ecb48f9bbbc5b71/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5615c5c2b177 - std::backtrace_rs::backtrace::libunwind::trace::h746c3e9529d524bc [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x5615c5c2b177 - std::backtrace_rs::backtrace::trace_unsynchronized::h84373278bfb39e0c [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x5615c5c2b177 - std::sys_common::backtrace::_print_fmt::h517324efde750597 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x5615c5c2b177 - ::fmt::hf594ab77fac89284 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x5615c5c46eac - core::fmt::write::h3868db8542c90941 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/core/src/fmt/mod.rs:1078:17 [INFO] [stderr] 5: 0x5615c5c27b62 - std::io::Write::write_fmt::h3f6656f045fa877f [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/io/mod.rs:1519:15 [INFO] [stderr] 6: 0x5615c5c2d205 - std::sys_common::backtrace::_print::hda7655c057c24dcc [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x5615c5c2d205 - std::sys_common::backtrace::print::h546a6c8431d46287 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x5615c5c2d205 - std::panicking::default_hook::{{closure}}::h006dd083853faf51 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x5615c5c2cd63 - std::panicking::default_hook::hf0f9afb1017317fc [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x5615c5c2d9a1 - std::panicking::rust_panic_with_hook::hb7a19826c029b1d6 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x5615c5b72c7e - std::panicking::begin_panic::{{closure}}::h9cf47c01b36fed79 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/panicking.rs:520:9 [INFO] [stderr] 12: 0x5615c5b32479 - std::sys_common::backtrace::__rust_end_short_backtrace::h2068e74734611c39 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x5615c5b72bab - std::panicking::begin_panic::hfa2bd14abc49d96a [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/panicking.rs:519:12 [INFO] [stderr] 14: 0x5615c5a0515b - build_script_build::LibrarySearcher::try_locate_hdf5_library::h772e0099ed0ccf26 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] 15: 0x5615c5a06a33 - build_script_build::main::h3b82ebe3fa8fef73 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647:9 [INFO] [stderr] 16: 0x5615c5a0992b - core::ops::function::FnOnce::call_once::hdf101229a5b60174 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x5615c5a0b5fe - std::sys_common::backtrace::__rust_begin_short_backtrace::h3f7b500fe6bc4c80 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x5615c5a12ee1 - std::rt::lang_start::{{closure}}::hf0fdf479a6861c57 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/rt.rs:66:18 [INFO] [stderr] 19: 0x5615c5c2ddc7 - core::ops::function::impls:: for &F>::call_once::h54c39b9b8451875a [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x5615c5c2ddc7 - std::panicking::try::do_call::hcdfba51a06e21b42 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/panicking.rs:379:40 [INFO] [stderr] 21: 0x5615c5c2ddc7 - std::panicking::try::h77386c66889b2066 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/panicking.rs:343:19 [INFO] [stderr] 22: 0x5615c5c2ddc7 - std::panic::catch_unwind::hc55a0d8aadca44f0 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/panic.rs:396:14 [INFO] [stderr] 23: 0x5615c5c2ddc7 - std::rt::lang_start_internal::h97dca9624db2aa85 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/rt.rs:51:25 [INFO] [stderr] 24: 0x5615c5a12eb7 - std::rt::lang_start::h5a54e87b3fa34a48 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/rt.rs:65:5 [INFO] [stderr] 25: 0x5615c5a0807a - main [INFO] [stderr] 26: 0x7f0696a190b3 - __libc_start_main [INFO] [stderr] 27: 0x5615c5a000be - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "12f6d8e056ba094d86401aa002d477f7ee328fc30824abaf1347687b7c4cf180", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "12f6d8e056ba094d86401aa002d477f7ee328fc30824abaf1347687b7c4cf180", kill_on_drop: false }` [INFO] [stdout] 12f6d8e056ba094d86401aa002d477f7ee328fc30824abaf1347687b7c4cf180