[INFO] cloning repository https://github.com/38/pyd4 [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/38/pyd4" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 15f07e7e103cd4bd5474c7098c2c3d7a72ede2bd [INFO] checking 38/pyd4 against master#a609fb45efad59dfd459c76e50899be9f0583b5a for pr-80579 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4" "/workspace/builds/worker-2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-2/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/38/pyd4 on toolchain a609fb45efad59dfd459c76e50899be9f0583b5a [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a609fb45efad59dfd459c76e50899be9f0583b5a" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/38/pyd4 [INFO] finished tweaking git repo https://github.com/38/pyd4 [INFO] tweaked toml for git repo https://github.com/38/pyd4 written to /workspace/builds/worker-2/source/Cargo.toml [INFO] crate git repo https://github.com/38/pyd4 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+a609fb45efad59dfd459c76e50899be9f0583b5a" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+a609fb45efad59dfd459c76e50899be9f0583b5a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 059db1dc983320ede6bf99785db4f8b8332c46cd76a225a3aecf982cf8868370 [INFO] running `Command { std: "docker" "start" "-a" "059db1dc983320ede6bf99785db4f8b8332c46cd76a225a3aecf982cf8868370", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "059db1dc983320ede6bf99785db4f8b8332c46cd76a225a3aecf982cf8868370", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "059db1dc983320ede6bf99785db4f8b8332c46cd76a225a3aecf982cf8868370", kill_on_drop: false }` [INFO] [stdout] 059db1dc983320ede6bf99785db4f8b8332c46cd76a225a3aecf982cf8868370 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+a609fb45efad59dfd459c76e50899be9f0583b5a" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 9c78708d0c6fe23f8e48ec49b8e37602c880b993b0d7d1d641fd71720d068da5 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "9c78708d0c6fe23f8e48ec49b8e37602c880b993b0d7d1d641fd71720d068da5", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling libc v0.2.77 [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Checking cfg-if v0.1.10 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling syn v1.0.41 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling version_check v0.9.2 [INFO] [stderr] Compiling log v0.4.11 [INFO] [stderr] Compiling maybe-uninit v2.0.0 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling libloading v0.6.3 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling getrandom v0.1.15 [INFO] [stderr] Compiling termcolor v1.1.0 [INFO] [stderr] Compiling rayon-core v1.8.1 [INFO] [stderr] Compiling ryu v1.0.5 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Checking smallvec v1.4.2 [INFO] [stderr] Compiling unindent v0.1.6 [INFO] [stderr] Compiling serde_json v1.0.57 [INFO] [stderr] Checking ppv-lite86 v0.2.9 [INFO] [stderr] Checking either v1.6.1 [INFO] [stderr] Compiling pyo3 v0.12.1 [INFO] [stderr] Compiling clang-sys v1.0.0 [INFO] [stderr] Checking lock_api v0.4.1 [INFO] [stderr] Checking instant v0.1.7 [INFO] [stderr] Compiling paste-impl v0.1.18 [INFO] [stderr] Compiling proc-macro2 v1.0.21 [INFO] [stderr] Checking crc32fast v1.2.0 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling crossbeam-utils v0.7.2 [INFO] [stderr] Compiling memoffset v0.5.6 [INFO] [stderr] Compiling crossbeam-epoch v0.8.2 [INFO] [stderr] Compiling miniz_oxide v0.4.2 [INFO] [stderr] Compiling rayon v1.4.0 [INFO] [stderr] Compiling aho-corasick v0.7.13 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking parking_lot_core v0.8.0 [INFO] [stderr] Checking memmap v0.7.0 [INFO] [stderr] Compiling regex v1.3.9 [INFO] [stderr] Checking paste v0.1.18 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Checking crossbeam-channel v0.4.4 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking flate2 v1.0.17 [INFO] [stderr] Checking parking_lot v0.11.0 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking crossbeam-deque v0.7.3 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking d4-framefile v0.1.13 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling pyo3-derive-backend v0.12.1 [INFO] [stderr] Compiling ghost v0.1.2 [INFO] [stderr] Compiling ctor v0.1.15 [INFO] [stderr] Compiling inventory-impl v0.1.9 [INFO] [stderr] Compiling indoc-impl v0.3.6 [INFO] [stderr] Compiling pyo3cls v0.12.1 [INFO] [stderr] Compiling serde_derive v1.0.116 [INFO] [stderr] Checking indoc v0.3.6 [INFO] [stderr] Checking inventory v0.1.9 [INFO] [stderr] Compiling d4-hts v0.1.13 [INFO] [stderr] error: failed to run custom build command for `d4-hts v0.1.13` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/d4-hts-1e802f6483b51fe6/build-script-build` (exit code: 101) [INFO] [stderr] --- stderr [INFO] [stderr] + pushd /opt/rustwide/target/debug/build/d4-hts-6753884cb1f3058b/out [INFO] [stderr] + HTSLIB_VERSION=1.11 [INFO] [stderr] + rm -rf /opt/rustwide/target/debug/build/d4-hts-6753884cb1f3058b/out/htslib [INFO] [stderr] + git clone -b 1.11 https://github.com/samtools/htslib.git [INFO] [stderr] Cloning into 'htslib'... [INFO] [stderr] fatal: unable to access 'https://github.com/samtools/htslib.git/': Could not resolve host: github.com [INFO] [stderr] thread 'main' panicked at 'assertion failed: Command::new(\"bash\").args(&[\"build_htslib.sh\",\n &version]).stdout(std::process::Stdio::null()).spawn().expect(\"Unable to build htslib\").wait().unwrap().success()', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.1.13/build.rs:34:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5565bb942ff7 - std::backtrace_rs::backtrace::libunwind::trace::h746c3e9529d524bc [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x5565bb942ff7 - std::backtrace_rs::backtrace::trace_unsynchronized::h84373278bfb39e0c [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x5565bb942ff7 - std::sys_common::backtrace::_print_fmt::h517324efde750597 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x5565bb942ff7 - ::fmt::hf594ab77fac89284 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x5565bb96591c - core::fmt::write::h3868db8542c90941 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/core/src/fmt/mod.rs:1078:17 [INFO] [stderr] 5: 0x5565bb93f252 - std::io::Write::write_fmt::h3f6656f045fa877f [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/io/mod.rs:1519:15 [INFO] [stderr] 6: 0x5565bb9454b5 - std::sys_common::backtrace::_print::hda7655c057c24dcc [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x5565bb9454b5 - std::sys_common::backtrace::print::h546a6c8431d46287 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x5565bb9454b5 - std::panicking::default_hook::{{closure}}::h006dd083853faf51 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x5565bb945013 - std::panicking::default_hook::hf0f9afb1017317fc [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x5565bb945c51 - std::panicking::rust_panic_with_hook::hb7a19826c029b1d6 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x5565bb945767 - std::panicking::begin_panic_handler::{{closure}}::hde71edcd925d0c5e [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/panicking.rs:495:13 [INFO] [stderr] 12: 0x5565bb9434bc - std::sys_common::backtrace::__rust_end_short_backtrace::h8a3c7d6cea578919 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x5565bb9456f9 - rust_begin_unwind [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/panicking.rs:493:5 [INFO] [stderr] 14: 0x5565bb963ff1 - core::panicking::panic_fmt::h20225113c4a2f8fd [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/core/src/panicking.rs:92:14 [INFO] [stderr] 15: 0x5565bb963f3d - core::panicking::panic::h35b77276aa4b0c12 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/core/src/panicking.rs:50:5 [INFO] [stderr] 16: 0x5565bb3759c4 - build_script_build::build_own_htslib::hb81c894b6b18ad5f [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.1.13/build.rs:34:5 [INFO] [stderr] 17: 0x5565bb375eb4 - build_script_build::main::hd5b98a5c60a67025 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-hts-0.1.13/build.rs:66:9 [INFO] [stderr] 18: 0x5565bb37708b - core::ops::function::FnOnce::call_once::h1019c7b2f2b3285e [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 19: 0x5565bb376f7e - std::sys_common::backtrace::__rust_begin_short_backtrace::haa5cbde749fb5481 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 20: 0x5565bb377621 - std::rt::lang_start::{{closure}}::h7bd7e0adbe7ba31f [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/rt.rs:66:18 [INFO] [stderr] 21: 0x5565bb946167 - core::ops::function::impls:: for &F>::call_once::h54c39b9b8451875a [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 22: 0x5565bb946167 - std::panicking::try::do_call::hcdfba51a06e21b42 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/panicking.rs:379:40 [INFO] [stderr] 23: 0x5565bb946167 - std::panicking::try::h77386c66889b2066 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/panicking.rs:343:19 [INFO] [stderr] 24: 0x5565bb946167 - std::panic::catch_unwind::hc55a0d8aadca44f0 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/panic.rs:396:14 [INFO] [stderr] 25: 0x5565bb946167 - std::rt::lang_start_internal::h97dca9624db2aa85 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/rt.rs:51:25 [INFO] [stderr] 26: 0x5565bb3775f7 - std::rt::lang_start::h34da7fc59b7c6751 [INFO] [stderr] at /rustc/a609fb45efad59dfd459c76e50899be9f0583b5a/library/std/src/rt.rs:65:5 [INFO] [stderr] 27: 0x5565bb37658a - main [INFO] [stderr] 28: 0x7f9c53f640b3 - __libc_start_main [INFO] [stderr] 29: 0x5565bb3750be - _start [INFO] [stderr] 30: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "9c78708d0c6fe23f8e48ec49b8e37602c880b993b0d7d1d641fd71720d068da5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9c78708d0c6fe23f8e48ec49b8e37602c880b993b0d7d1d641fd71720d068da5", kill_on_drop: false }` [INFO] [stdout] 9c78708d0c6fe23f8e48ec49b8e37602c880b993b0d7d1d641fd71720d068da5