[INFO] fetching crate d4utils 0.1.16... [INFO] checking d4utils-0.1.16 against master#2ad5292aea6328113b55968b4322528d48261316 for pr-80243 [INFO] extracting crate d4utils 0.1.16 into /workspace/builds/worker-5/source [INFO] validating manifest of crates.io crate d4utils 0.1.16 on toolchain 2ad5292aea6328113b55968b4322528d48261316 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+2ad5292aea6328113b55968b4322528d48261316" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate d4utils 0.1.16 [INFO] finished tweaking crates.io crate d4utils 0.1.16 [INFO] tweaked toml for crates.io crate d4utils 0.1.16 written to /workspace/builds/worker-5/source/Cargo.toml [INFO] crate crates.io crate d4utils 0.1.16 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+2ad5292aea6328113b55968b4322528d48261316" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c8ac004eab7d63a0ad09a2dde3d3353ba464f767bee4de425dc8f74c46a1905e" "/opt/rustwide/cargo-home/bin/cargo" "+2ad5292aea6328113b55968b4322528d48261316" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 216386cabdb92b8e44aa33720dfc42744d95cd403f8c7675a4dade07f8c7ebc4 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "216386cabdb92b8e44aa33720dfc42744d95cd403f8c7675a4dade07f8c7ebc4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "216386cabdb92b8e44aa33720dfc42744d95cd403f8c7675a4dade07f8c7ebc4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "216386cabdb92b8e44aa33720dfc42744d95cd403f8c7675a4dade07f8c7ebc4", kill_on_drop: false }` [INFO] [stdout] 216386cabdb92b8e44aa33720dfc42744d95cd403f8c7675a4dade07f8c7ebc4 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c8ac004eab7d63a0ad09a2dde3d3353ba464f767bee4de425dc8f74c46a1905e" "/opt/rustwide/cargo-home/bin/cargo" "+2ad5292aea6328113b55968b4322528d48261316" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] b5588003f93809a52e0152568c0909326c07e6316b1f66104e7075f4116b5963 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "b5588003f93809a52e0152568c0909326c07e6316b1f66104e7075f4116b5963", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.80 [INFO] [stderr] Compiling yaml-rust v0.3.5 [INFO] [stderr] Compiling const_fn v0.4.3 [INFO] [stderr] Checking cfg-if v0.1.10 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Compiling rayon-core v1.9.0 [INFO] [stderr] Compiling syn v1.0.53 [INFO] [stderr] Checking itoa v0.4.6 [INFO] [stderr] Compiling libloading v0.6.5 [INFO] [stderr] Compiling memoffset v0.6.1 [INFO] [stderr] Compiling rayon v1.5.0 [INFO] [stderr] Checking thread_local v1.0.1 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Checking crossbeam-utils v0.8.1 [INFO] [stderr] Checking plotters v0.2.15 [INFO] [stderr] Checking log v0.4.11 [INFO] [stderr] Checking serde_json v1.0.59 [INFO] [stderr] Checking regex v1.4.2 [INFO] [stderr] Checking crossbeam-channel v0.5.0 [INFO] [stderr] Checking crossbeam-epoch v0.9.1 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Compiling clang-sys v1.0.3 [INFO] [stderr] Checking getrandom v0.1.15 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking memmap v0.7.0 [INFO] [stderr] Checking flate2 v1.0.19 [INFO] [stderr] Checking clap v2.33.3 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Checking crossbeam-deque v0.8.0 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking d4-framefile v0.1.16 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling serde_derive v1.0.117 [INFO] [stderr] Compiling d4-hts v0.1.16 [INFO] [stderr] Compiling d4-bigwig v0.1.16 [INFO] [stderr] error: failed to run custom build command for `d4-bigwig v0.1.16` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/d4-bigwig-f084f227468aa938/build-script-build` (exit code: 101) [INFO] [stderr] --- stderr [INFO] [stderr] + cd /opt/rustwide/target/debug/build/d4-bigwig-8196412b2c11e3c4/out [INFO] [stderr] + rm -rf /opt/rustwide/target/debug/build/d4-bigwig-8196412b2c11e3c4/out/libBigWig [INFO] [stderr] + git clone -b 0.4.4 https://github.com/dpryan79/libBigWig [INFO] [stderr] Cloning into 'libBigWig'... [INFO] [stderr] fatal: unable to access 'https://github.com/dpryan79/libBigWig/': Could not resolve host: github.com [INFO] [stderr] + cd libBigWig [INFO] [stderr] build-lib.sh: line 12: cd: libBigWig: No such file or directory [INFO] [stderr] + perl -i -pe s/-lcurl//g Makefile [INFO] [stderr] Can't open Makefile: No such file or directory. [INFO] [stderr] ++ echo x86_64-unknown-linux-gnu [INFO] [stderr] ++ grep musl [INFO] [stderr] + '[' '!' -z ']' [INFO] [stderr] + tar xz [INFO] [stderr] + curl https://zlib.net/zlib-1.2.11.tar.gz [INFO] [stderr] % Total % Received % Xferd Average Speed Time Time Time Current [INFO] [stderr] Dload Upload Total Spent Left Speed [INFO] [stderr] 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0curl: (6) Could not resolve host: zlib.net [INFO] [stderr] [INFO] [stderr] gzip: stdin: unexpected end of file [INFO] [stderr] tar: Child returned status 1 [INFO] [stderr] tar: Error is not recoverable: exiting now [INFO] [stderr] + cd zlib-1.2.11 [INFO] [stderr] build-lib.sh: line 29: cd: zlib-1.2.11: No such file or directory [INFO] [stderr] + is_musl [INFO] [stderr] ++ grep musl [INFO] [stderr] ++ echo x86_64-unknown-linux-gnu [INFO] [stderr] + '[' '!' -z ']' [INFO] [stderr] + return 1 [INFO] [stderr] + ./configure [INFO] [stderr] build-lib.sh: line 30: ./configure: No such file or directory [INFO] [stderr] + make [INFO] [stderr] make: *** No targets specified and no makefile found. Stop. [INFO] [stderr] + cp libz.a .. [INFO] [stderr] cp: cannot stat 'libz.a': No such file or directory [INFO] [stderr] + cd .. [INFO] [stderr] + CFLAGS='-DNOCURL -O3 -Izlib-1.2.11' [INFO] [stderr] + make -j8 lib-static [INFO] [stderr] make: *** No rule to make target 'lib-static'. Stop. [INFO] [stderr] thread 'main' panicked at 'assertion failed: Command::new(\"bash\").args(&[\"build-lib.sh\", lib_root.to_str().unwrap(),\n \"0.4.4\"]).spawn().expect(\"Unable to build libBigWig\").wait().unwrap().success()', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-bigwig-0.1.16/build.rs:25:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x561708f19ef7 - std::backtrace_rs::backtrace::libunwind::trace::h746c3e9529d524bc [INFO] [stderr] at /rustc/2ad5292aea6328113b55968b4322528d48261316/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x561708f19ef7 - std::backtrace_rs::backtrace::trace_unsynchronized::h84373278bfb39e0c [INFO] [stderr] at /rustc/2ad5292aea6328113b55968b4322528d48261316/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x561708f19ef7 - std::sys_common::backtrace::_print_fmt::h517324efde750597 [INFO] [stderr] at /rustc/2ad5292aea6328113b55968b4322528d48261316/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x561708f19ef7 - ::fmt::hf594ab77fac89284 [INFO] [stderr] at /rustc/2ad5292aea6328113b55968b4322528d48261316/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x561708f3c33c - core::fmt::write::h3868db8542c90941 [INFO] [stderr] at /rustc/2ad5292aea6328113b55968b4322528d48261316/library/core/src/fmt/mod.rs:1078:17 [INFO] [stderr] 5: 0x561708f16262 - std::io::Write::write_fmt::h3f6656f045fa877f [INFO] [stderr] at /rustc/2ad5292aea6328113b55968b4322528d48261316/library/std/src/io/mod.rs:1519:15 [INFO] [stderr] 6: 0x561708f1c285 - std::sys_common::backtrace::_print::hda7655c057c24dcc [INFO] [stderr] at /rustc/2ad5292aea6328113b55968b4322528d48261316/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x561708f1c285 - std::sys_common::backtrace::print::h546a6c8431d46287 [INFO] [stderr] at /rustc/2ad5292aea6328113b55968b4322528d48261316/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x561708f1c285 - std::panicking::default_hook::{{closure}}::h006dd083853faf51 [INFO] [stderr] at /rustc/2ad5292aea6328113b55968b4322528d48261316/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x561708f1bdda - std::panicking::default_hook::hf0f9afb1017317fc [INFO] [stderr] at /rustc/2ad5292aea6328113b55968b4322528d48261316/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x561708f1ca21 - std::panicking::rust_panic_with_hook::hb7a19826c029b1d6 [INFO] [stderr] at /rustc/2ad5292aea6328113b55968b4322528d48261316/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x561708f1c537 - std::panicking::begin_panic_handler::{{closure}}::hde71edcd925d0c5e [INFO] [stderr] at /rustc/2ad5292aea6328113b55968b4322528d48261316/library/std/src/panicking.rs:495:13 [INFO] [stderr] 12: 0x561708f1a3bc - std::sys_common::backtrace::__rust_end_short_backtrace::h8a3c7d6cea578919 [INFO] [stderr] at /rustc/2ad5292aea6328113b55968b4322528d48261316/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x561708f1c4c9 - rust_begin_unwind [INFO] [stderr] at /rustc/2ad5292aea6328113b55968b4322528d48261316/library/std/src/panicking.rs:493:5 [INFO] [stderr] 14: 0x561708f3aa11 - core::panicking::panic_fmt::h20225113c4a2f8fd [INFO] [stderr] at /rustc/2ad5292aea6328113b55968b4322528d48261316/library/core/src/panicking.rs:92:14 [INFO] [stderr] 15: 0x561708f3a95d - core::panicking::panic::h35b77276aa4b0c12 [INFO] [stderr] at /rustc/2ad5292aea6328113b55968b4322528d48261316/library/core/src/panicking.rs:50:5 [INFO] [stderr] 16: 0x56170897c8f9 - build_script_build::main::h2ef016fbf065e68e [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/d4-bigwig-0.1.16/build.rs:25:5 [INFO] [stderr] 17: 0x56170897f46b - core::ops::function::FnOnce::call_once::hd2d662eca0d997e4 [INFO] [stderr] at /rustc/2ad5292aea6328113b55968b4322528d48261316/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 18: 0x56170897d24e - std::sys_common::backtrace::__rust_begin_short_backtrace::h06b0d11490a74e05 [INFO] [stderr] at /rustc/2ad5292aea6328113b55968b4322528d48261316/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 19: 0x56170897d491 - std::rt::lang_start::{{closure}}::h2f378fcec79c4cbd [INFO] [stderr] at /rustc/2ad5292aea6328113b55968b4322528d48261316/library/std/src/rt.rs:66:18 [INFO] [stderr] 20: 0x561708f1cf37 - core::ops::function::impls:: for &F>::call_once::h54c39b9b8451875a [INFO] [stderr] at /rustc/2ad5292aea6328113b55968b4322528d48261316/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 21: 0x561708f1cf37 - std::panicking::try::do_call::hcdfba51a06e21b42 [INFO] [stderr] at /rustc/2ad5292aea6328113b55968b4322528d48261316/library/std/src/panicking.rs:379:40 [INFO] [stderr] 22: 0x561708f1cf37 - std::panicking::try::h77386c66889b2066 [INFO] [stderr] at /rustc/2ad5292aea6328113b55968b4322528d48261316/library/std/src/panicking.rs:343:19 [INFO] [stderr] 23: 0x561708f1cf37 - std::panic::catch_unwind::hc55a0d8aadca44f0 [INFO] [stderr] at /rustc/2ad5292aea6328113b55968b4322528d48261316/library/std/src/panic.rs:396:14 [INFO] [stderr] 24: 0x561708f1cf37 - std::rt::lang_start_internal::h97dca9624db2aa85 [INFO] [stderr] at /rustc/2ad5292aea6328113b55968b4322528d48261316/library/std/src/rt.rs:51:25 [INFO] [stderr] 25: 0x56170897d467 - std::rt::lang_start::h5d6f9d3879a01338 [INFO] [stderr] at /rustc/2ad5292aea6328113b55968b4322528d48261316/library/std/src/rt.rs:65:5 [INFO] [stderr] 26: 0x56170897cbaa - main [INFO] [stderr] 27: 0x7f3900a730b3 - __libc_start_main [INFO] [stderr] 28: 0x56170897c0be - _start [INFO] [stderr] 29: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "b5588003f93809a52e0152568c0909326c07e6316b1f66104e7075f4116b5963", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b5588003f93809a52e0152568c0909326c07e6316b1f66104e7075f4116b5963", kill_on_drop: false }` [INFO] [stdout] b5588003f93809a52e0152568c0909326c07e6316b1f66104e7075f4116b5963