[INFO] fetching crate d4-hts 0.1.15... [INFO] checking d4-hts-0.1.15 against try#b2f80f6008cdafc35b4472bd46afa16cc6b0cd63 for pr-79470 [INFO] extracting crate d4-hts 0.1.15 into /workspace/builds/worker-12/source [INFO] validating manifest of crates.io crate d4-hts 0.1.15 on toolchain b2f80f6008cdafc35b4472bd46afa16cc6b0cd63 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+b2f80f6008cdafc35b4472bd46afa16cc6b0cd63" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate d4-hts 0.1.15 [INFO] finished tweaking crates.io crate d4-hts 0.1.15 [INFO] tweaked toml for crates.io crate d4-hts 0.1.15 written to /workspace/builds/worker-12/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+b2f80f6008cdafc35b4472bd46afa16cc6b0cd63" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+b2f80f6008cdafc35b4472bd46afa16cc6b0cd63" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c8ac004eab7d63a0ad09a2dde3d3353ba464f767bee4de425dc8f74c46a1905e" "/opt/rustwide/cargo-home/bin/cargo" "+b2f80f6008cdafc35b4472bd46afa16cc6b0cd63" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 6aa0c03c087445077beeac6f5f3a08fac52ca30c8873a35607c8d27c5edd69ca [INFO] running `Command { std: "docker" "start" "-a" "6aa0c03c087445077beeac6f5f3a08fac52ca30c8873a35607c8d27c5edd69ca", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "6aa0c03c087445077beeac6f5f3a08fac52ca30c8873a35607c8d27c5edd69ca", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6aa0c03c087445077beeac6f5f3a08fac52ca30c8873a35607c8d27c5edd69ca", kill_on_drop: false }` [INFO] [stdout] 6aa0c03c087445077beeac6f5f3a08fac52ca30c8873a35607c8d27c5edd69ca [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c8ac004eab7d63a0ad09a2dde3d3353ba464f767bee4de425dc8f74c46a1905e" "/opt/rustwide/cargo-home/bin/cargo" "+b2f80f6008cdafc35b4472bd46afa16cc6b0cd63" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 951e46b4d8202ce8ce87daf99140fc9d7264f7b280ba3e4dc03772d864b503d5 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "951e46b4d8202ce8ce87daf99140fc9d7264f7b280ba3e4dc03772d864b503d5", kill_on_drop: false }` [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling proc-macro2 v1.0.24 [INFO] [stderr] Compiling log v0.4.11 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling termcolor v1.1.2 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling libloading v0.6.6 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling clang-sys v1.0.3 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling d4-hts v0.1.15 (/opt/rustwide/workdir) [INFO] [stderr] error: failed to run custom build command for `d4-hts v0.1.15 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/d4-hts-dab6ed7f1d2c6638/build-script-build` (exit code: 101) [INFO] [stderr] --- stderr [INFO] [stderr] + pushd /opt/rustwide/target/debug/build/d4-hts-ceaed7f88ec55c61/out [INFO] [stderr] + HTSLIB_VERSION=1.11 [INFO] [stderr] + rm -rf /opt/rustwide/target/debug/build/d4-hts-ceaed7f88ec55c61/out/htslib [INFO] [stderr] + git clone -b 1.11 https://github.com/samtools/htslib.git [INFO] [stderr] Cloning into 'htslib'... [INFO] [stderr] fatal: unable to access 'https://github.com/samtools/htslib.git/': Could not resolve host: github.com [INFO] [stderr] thread 'main' panicked at 'assertion failed: Command::new(\"bash\").args(&[\"build_htslib.sh\",\n &version]).stdout(std::process::Stdio::null()).spawn().expect(\"Unable to build htslib\").wait().unwrap().success()', build.rs:34:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55caca8a24b0 - std::backtrace_rs::backtrace::libunwind::trace::h746c3e9529d524bc [INFO] [stderr] at /rustc/b2f80f6008cdafc35b4472bd46afa16cc6b0cd63/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x55caca8a24b0 - std::backtrace_rs::backtrace::trace_unsynchronized::h86340908ff889faa [INFO] [stderr] at /rustc/b2f80f6008cdafc35b4472bd46afa16cc6b0cd63/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55caca8a24b0 - std::sys_common::backtrace::_print_fmt::h43f85f9b18230404 [INFO] [stderr] at /rustc/b2f80f6008cdafc35b4472bd46afa16cc6b0cd63/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55caca8a24b0 - ::fmt::hc132ae1a5b5aa7cd [INFO] [stderr] at /rustc/b2f80f6008cdafc35b4472bd46afa16cc6b0cd63/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55caca8c810c - core::fmt::write::hdf023a0036d2a25f [INFO] [stderr] at /rustc/b2f80f6008cdafc35b4472bd46afa16cc6b0cd63/library/core/src/fmt/mod.rs:1078:17 [INFO] [stderr] 5: 0x55caca89e802 - std::io::Write::write_fmt::h8580846154bcb66a [INFO] [stderr] at /rustc/b2f80f6008cdafc35b4472bd46afa16cc6b0cd63/library/std/src/io/mod.rs:1519:15 [INFO] [stderr] 6: 0x55caca8a4725 - std::sys_common::backtrace::_print::h7ee55fed88d107a3 [INFO] [stderr] at /rustc/b2f80f6008cdafc35b4472bd46afa16cc6b0cd63/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55caca8a4725 - std::sys_common::backtrace::print::h54a7d3e52a524177 [INFO] [stderr] at /rustc/b2f80f6008cdafc35b4472bd46afa16cc6b0cd63/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55caca8a4725 - std::panicking::default_hook::{{closure}}::h60921e857bf55a40 [INFO] [stderr] at /rustc/b2f80f6008cdafc35b4472bd46afa16cc6b0cd63/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x55caca8a427a - std::panicking::default_hook::hf0f9afb1017317fc [INFO] [stderr] at /rustc/b2f80f6008cdafc35b4472bd46afa16cc6b0cd63/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x55caca8a4ec1 - std::panicking::rust_panic_with_hook::h8d66bf42b407aaea [INFO] [stderr] at /rustc/b2f80f6008cdafc35b4472bd46afa16cc6b0cd63/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x55caca8a49d7 - std::panicking::begin_panic_handler::{{closure}}::hde71edcd925d0c5e [INFO] [stderr] at /rustc/b2f80f6008cdafc35b4472bd46afa16cc6b0cd63/library/std/src/panicking.rs:495:13 [INFO] [stderr] 12: 0x55caca8a296c - std::sys_common::backtrace::__rust_end_short_backtrace::h8a3c7d6cea578919 [INFO] [stderr] at /rustc/b2f80f6008cdafc35b4472bd46afa16cc6b0cd63/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55caca8a4969 - rust_begin_unwind [INFO] [stderr] at /rustc/b2f80f6008cdafc35b4472bd46afa16cc6b0cd63/library/std/src/panicking.rs:493:5 [INFO] [stderr] 14: 0x55caca8c67e1 - core::panicking::panic_fmt::h20225113c4a2f8fd [INFO] [stderr] at /rustc/b2f80f6008cdafc35b4472bd46afa16cc6b0cd63/library/core/src/panicking.rs:92:14 [INFO] [stderr] 15: 0x55caca8c672d - core::panicking::panic::h35b77276aa4b0c12 [INFO] [stderr] at /rustc/b2f80f6008cdafc35b4472bd46afa16cc6b0cd63/library/core/src/panicking.rs:50:5 [INFO] [stderr] 16: 0x55caca31b9c1 - build_script_build::build_own_htslib::h6e5b574748814be7 [INFO] [stderr] at /opt/rustwide/workdir/build.rs:34:5 [INFO] [stderr] 17: 0x55caca31be94 - build_script_build::main::hb1ff2faaf308aa05 [INFO] [stderr] at /opt/rustwide/workdir/build.rs:66:9 [INFO] [stderr] 18: 0x55caca31d3bb - core::ops::function::FnOnce::call_once::h4429a531132593a4 [INFO] [stderr] at /rustc/b2f80f6008cdafc35b4472bd46afa16cc6b0cd63/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 19: 0x55caca31cc2e - std::sys_common::backtrace::__rust_begin_short_backtrace::h36be13246412cbd8 [INFO] [stderr] at /rustc/b2f80f6008cdafc35b4472bd46afa16cc6b0cd63/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 20: 0x55caca31d1d1 - std::rt::lang_start::{{closure}}::h12858a9b010f4caa [INFO] [stderr] at /rustc/b2f80f6008cdafc35b4472bd46afa16cc6b0cd63/library/std/src/rt.rs:66:18 [INFO] [stderr] 21: 0x55caca8a52e7 - core::ops::function::impls:: for &F>::call_once::h54c39b9b8451875a [INFO] [stderr] at /rustc/b2f80f6008cdafc35b4472bd46afa16cc6b0cd63/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 22: 0x55caca8a52e7 - std::panicking::try::do_call::hcdfba51a06e21b42 [INFO] [stderr] at /rustc/b2f80f6008cdafc35b4472bd46afa16cc6b0cd63/library/std/src/panicking.rs:379:40 [INFO] [stderr] 23: 0x55caca8a52e7 - std::panicking::try::hb36953ccd24f930d [INFO] [stderr] at /rustc/b2f80f6008cdafc35b4472bd46afa16cc6b0cd63/library/std/src/panicking.rs:343:19 [INFO] [stderr] 24: 0x55caca8a52e7 - std::panic::catch_unwind::hbb374cd03beb3824 [INFO] [stderr] at /rustc/b2f80f6008cdafc35b4472bd46afa16cc6b0cd63/library/std/src/panic.rs:396:14 [INFO] [stderr] 25: 0x55caca8a52e7 - std::rt::lang_start_internal::h97dca9624db2aa85 [INFO] [stderr] at /rustc/b2f80f6008cdafc35b4472bd46afa16cc6b0cd63/library/std/src/rt.rs:51:25 [INFO] [stderr] 26: 0x55caca31d1a7 - std::rt::lang_start::hafed8e81037ce6f7 [INFO] [stderr] at /rustc/b2f80f6008cdafc35b4472bd46afa16cc6b0cd63/library/std/src/rt.rs:65:5 [INFO] [stderr] 27: 0x55caca31c4ca - main [INFO] [stderr] 28: 0x7f4b933bc0b3 - __libc_start_main [INFO] [stderr] 29: 0x55caca31b0be - _start [INFO] [stderr] 30: 0x0 - [INFO] running `Command { std: "docker" "inspect" "951e46b4d8202ce8ce87daf99140fc9d7264f7b280ba3e4dc03772d864b503d5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "951e46b4d8202ce8ce87daf99140fc9d7264f7b280ba3e4dc03772d864b503d5", kill_on_drop: false }` [INFO] [stdout] 951e46b4d8202ce8ce87daf99140fc9d7264f7b280ba3e4dc03772d864b503d5