[INFO] fetching crate netcdf-sys 0.3.4... [INFO] checking netcdf-sys-0.3.4 against master#b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18 for pr-79470 [INFO] extracting crate netcdf-sys 0.3.4 into /workspace/builds/worker-6/source [INFO] validating manifest of crates.io crate netcdf-sys 0.3.4 on toolchain b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate netcdf-sys 0.3.4 [INFO] finished tweaking crates.io crate netcdf-sys 0.3.4 [INFO] tweaked toml for crates.io crate netcdf-sys 0.3.4 written to /workspace/builds/worker-6/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c8ac004eab7d63a0ad09a2dde3d3353ba464f767bee4de425dc8f74c46a1905e" "/opt/rustwide/cargo-home/bin/cargo" "+b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 87f82ebe2e2192328430deebe1e455cb3feb72a99fc3db8e8e2ce778f98cddcf [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "87f82ebe2e2192328430deebe1e455cb3feb72a99fc3db8e8e2ce778f98cddcf", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "87f82ebe2e2192328430deebe1e455cb3feb72a99fc3db8e8e2ce778f98cddcf", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "87f82ebe2e2192328430deebe1e455cb3feb72a99fc3db8e8e2ce778f98cddcf", kill_on_drop: false }` [INFO] [stdout] 87f82ebe2e2192328430deebe1e455cb3feb72a99fc3db8e8e2ce778f98cddcf [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c8ac004eab7d63a0ad09a2dde3d3353ba464f767bee4de425dc8f74c46a1905e" "/opt/rustwide/cargo-home/bin/cargo" "+b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] daa8dfd6efa885850cc41925f1d91012a9be22fac4b5b7805f8518ad59f345dc [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "daa8dfd6efa885850cc41925f1d91012a9be22fac4b5b7805f8518ad59f345dc", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.81 [INFO] [stderr] Compiling netcdf-sys v0.3.4 (/opt/rustwide/workdir) [INFO] [stderr] Compiling libz-sys v1.1.2 [INFO] [stderr] Compiling hdf5-sys v0.7.0 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-4ecb48f9bbbc5b71/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5562f9fd8be0 - std::backtrace_rs::backtrace::libunwind::trace::h746c3e9529d524bc [INFO] [stderr] at /rustc/b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x5562f9fd8be0 - std::backtrace_rs::backtrace::trace_unsynchronized::h86340908ff889faa [INFO] [stderr] at /rustc/b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x5562f9fd8be0 - std::sys_common::backtrace::_print_fmt::h43f85f9b18230404 [INFO] [stderr] at /rustc/b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x5562f9fd8be0 - ::fmt::hc132ae1a5b5aa7cd [INFO] [stderr] at /rustc/b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x5562f9ff7f9c - core::fmt::write::hdf023a0036d2a25f [INFO] [stderr] at /rustc/b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18/library/core/src/fmt/mod.rs:1078:17 [INFO] [stderr] 5: 0x5562f9fd56d2 - std::io::Write::write_fmt::h8580846154bcb66a [INFO] [stderr] at /rustc/b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18/library/std/src/io/mod.rs:1519:15 [INFO] [stderr] 6: 0x5562f9fdac75 - std::sys_common::backtrace::_print::h7ee55fed88d107a3 [INFO] [stderr] at /rustc/b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x5562f9fdac75 - std::sys_common::backtrace::print::h54a7d3e52a524177 [INFO] [stderr] at /rustc/b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x5562f9fdac75 - std::panicking::default_hook::{{closure}}::h60921e857bf55a40 [INFO] [stderr] at /rustc/b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x5562f9fda7ca - std::panicking::default_hook::hf0f9afb1017317fc [INFO] [stderr] at /rustc/b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x5562f9fdb411 - std::panicking::rust_panic_with_hook::h8d66bf42b407aaea [INFO] [stderr] at /rustc/b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x5562f9f390ae - std::panicking::begin_panic::{{closure}}::h9cf47c01b36fed79 [INFO] [stderr] at /rustc/b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18/library/std/src/panicking.rs:520:9 [INFO] [stderr] 12: 0x5562f9f0b419 - std::sys_common::backtrace::__rust_end_short_backtrace::h2068e74734611c39 [INFO] [stderr] at /rustc/b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x5562f9f38fdb - std::panicking::begin_panic::hfa2bd14abc49d96a [INFO] [stderr] at /rustc/b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18/library/std/src/panicking.rs:519:12 [INFO] [stderr] 14: 0x5562f9dbb05b - build_script_build::LibrarySearcher::try_locate_hdf5_library::h772e0099ed0ccf26 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] 15: 0x5562f9dbc8c3 - build_script_build::main::h3b82ebe3fa8fef73 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647:9 [INFO] [stderr] 16: 0x5562f9dc2c3b - core::ops::function::FnOnce::call_once::hdf101229a5b60174 [INFO] [stderr] at /rustc/b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x5562f9dc1c6e - std::sys_common::backtrace::__rust_begin_short_backtrace::h3f7b500fe6bc4c80 [INFO] [stderr] at /rustc/b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x5562f9dc6cb1 - std::rt::lang_start::{{closure}}::hf0fdf479a6861c57 [INFO] [stderr] at /rustc/b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18/library/std/src/rt.rs:66:18 [INFO] [stderr] 19: 0x5562f9fdb837 - core::ops::function::impls:: for &F>::call_once::h54c39b9b8451875a [INFO] [stderr] at /rustc/b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x5562f9fdb837 - std::panicking::try::do_call::hcdfba51a06e21b42 [INFO] [stderr] at /rustc/b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18/library/std/src/panicking.rs:379:40 [INFO] [stderr] 21: 0x5562f9fdb837 - std::panicking::try::hb36953ccd24f930d [INFO] [stderr] at /rustc/b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18/library/std/src/panicking.rs:343:19 [INFO] [stderr] 22: 0x5562f9fdb837 - std::panic::catch_unwind::hbb374cd03beb3824 [INFO] [stderr] at /rustc/b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18/library/std/src/panic.rs:396:14 [INFO] [stderr] 23: 0x5562f9fdb837 - std::rt::lang_start_internal::h97dca9624db2aa85 [INFO] [stderr] at /rustc/b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18/library/std/src/rt.rs:51:25 [INFO] [stderr] 24: 0x5562f9dc6c87 - std::rt::lang_start::h5a54e87b3fa34a48 [INFO] [stderr] at /rustc/b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18/library/std/src/rt.rs:65:5 [INFO] [stderr] 25: 0x5562f9dbdf0a - main [INFO] [stderr] 26: 0x7f872665a0b3 - __libc_start_main [INFO] [stderr] 27: 0x5562f9db60be - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "daa8dfd6efa885850cc41925f1d91012a9be22fac4b5b7805f8518ad59f345dc", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "daa8dfd6efa885850cc41925f1d91012a9be22fac4b5b7805f8518ad59f345dc", kill_on_drop: false }` [INFO] [stdout] daa8dfd6efa885850cc41925f1d91012a9be22fac4b5b7805f8518ad59f345dc