[INFO] fetching crate hdf5 0.7.0... [INFO] checking hdf5-0.7.0 against master#b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18 for pr-79470 [INFO] extracting crate hdf5 0.7.0 into /workspace/builds/worker-5/source [INFO] validating manifest of crates.io crate hdf5 0.7.0 on toolchain b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate hdf5 0.7.0 [INFO] finished tweaking crates.io crate hdf5 0.7.0 [INFO] tweaked toml for crates.io crate hdf5 0.7.0 written to /workspace/builds/worker-5/source/Cargo.toml [INFO] crate crates.io crate hdf5 0.7.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c8ac004eab7d63a0ad09a2dde3d3353ba464f767bee4de425dc8f74c46a1905e" "/opt/rustwide/cargo-home/bin/cargo" "+b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 1f2877a0628e411d60dccb5fe9ca851a99533e65b28a0756ec9b336ec9d24e8e [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "1f2877a0628e411d60dccb5fe9ca851a99533e65b28a0756ec9b336ec9d24e8e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "1f2877a0628e411d60dccb5fe9ca851a99533e65b28a0756ec9b336ec9d24e8e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1f2877a0628e411d60dccb5fe9ca851a99533e65b28a0756ec9b336ec9d24e8e", kill_on_drop: false }` [INFO] [stdout] 1f2877a0628e411d60dccb5fe9ca851a99533e65b28a0756ec9b336ec9d24e8e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c8ac004eab7d63a0ad09a2dde3d3353ba464f767bee4de425dc8f74c46a1905e" "/opt/rustwide/cargo-home/bin/cargo" "+b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] ebcf2fe75534bcc212c7a73dfa20e1c03a56c4acb3ed6bc9639a017160ca616a [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "ebcf2fe75534bcc212c7a73dfa20e1c03a56c4acb3ed6bc9639a017160ca616a", kill_on_drop: false }` [INFO] [stderr] Compiling libloading v0.6.0 [INFO] [stderr] Compiling regex-syntax v0.6.17 [INFO] [stderr] Compiling proc-macro-hack-impl v0.4.2 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling ndarray v0.13.0 [INFO] [stderr] Checking ascii v1.0.0 [INFO] [stderr] Compiling hdf5 v0.7.0 (/opt/rustwide/workdir) [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling num-traits v0.2.11 [INFO] [stderr] Compiling num-integer v0.1.42 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Checking lock_api v0.3.4 [INFO] [stderr] Checking itertools v0.8.2 [INFO] [stderr] Checking pretty_assertions v0.6.1 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling proc-macro2 v1.0.10 [INFO] [stderr] Checking getrandom v0.1.14 [INFO] [stderr] Checking parking_lot_core v0.7.1 [INFO] [stderr] Checking rand v0.4.6 [INFO] [stderr] Checking matrixmultiply v0.2.3 [INFO] [stderr] Checking regex v1.3.6 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking parking_lot v0.10.2 [INFO] [stderr] Checking hdf5-types v0.7.0 [INFO] [stderr] Compiling aho-corasick v0.7.10 [INFO] [stderr] Checking rand_pcg v0.2.1 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Compiling quote v1.0.3 [INFO] [stderr] Compiling proc-macro-hack v0.4.2 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Compiling mashup-impl v0.1.9 [INFO] [stderr] Compiling syn v1.0.17 [INFO] [stderr] Checking tempdir v0.3.7 [INFO] [stderr] Checking mashup v0.1.9 [INFO] [stderr] Compiling hdf5-sys v0.7.0 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-5bc796a56200733b/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5582e50c44d0 - std::backtrace_rs::backtrace::libunwind::trace::h746c3e9529d524bc [INFO] [stderr] at /rustc/b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x5582e50c44d0 - std::backtrace_rs::backtrace::trace_unsynchronized::h86340908ff889faa [INFO] [stderr] at /rustc/b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x5582e50c44d0 - std::sys_common::backtrace::_print_fmt::h43f85f9b18230404 [INFO] [stderr] at /rustc/b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x5582e50c44d0 - ::fmt::hc132ae1a5b5aa7cd [INFO] [stderr] at /rustc/b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x5582e50e388c - core::fmt::write::hdf023a0036d2a25f [INFO] [stderr] at /rustc/b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18/library/core/src/fmt/mod.rs:1078:17 [INFO] [stderr] 5: 0x5582e50c0fc2 - std::io::Write::write_fmt::h8580846154bcb66a [INFO] [stderr] at /rustc/b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18/library/std/src/io/mod.rs:1519:15 [INFO] [stderr] 6: 0x5582e50c6565 - std::sys_common::backtrace::_print::h7ee55fed88d107a3 [INFO] [stderr] at /rustc/b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x5582e50c6565 - std::sys_common::backtrace::print::h54a7d3e52a524177 [INFO] [stderr] at /rustc/b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x5582e50c6565 - std::panicking::default_hook::{{closure}}::h60921e857bf55a40 [INFO] [stderr] at /rustc/b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x5582e50c60ba - std::panicking::default_hook::hf0f9afb1017317fc [INFO] [stderr] at /rustc/b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x5582e50c6d01 - std::panicking::rust_panic_with_hook::h8d66bf42b407aaea [INFO] [stderr] at /rustc/b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x5582e4edd1de - std::panicking::begin_panic::{{closure}}::h8cea0d1ccf79b0e3 [INFO] [stderr] at /rustc/b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18/library/std/src/panicking.rs:520:9 [INFO] [stderr] 12: 0x5582e4ebffd9 - std::sys_common::backtrace::__rust_end_short_backtrace::h5c84ab6deae1ed56 [INFO] [stderr] at /rustc/b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x5582e4edd10b - std::panicking::begin_panic::h3fbe7957cc0a7fdf [INFO] [stderr] at /rustc/b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18/library/std/src/panicking.rs:519:12 [INFO] [stderr] 14: 0x5582e4ea605b - build_script_build::LibrarySearcher::try_locate_hdf5_library::h6872614cf6638a52 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] 15: 0x5582e4ea78c3 - build_script_build::main::hde56ac13ba61733e [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647:9 [INFO] [stderr] 16: 0x5582e4ead3ab - core::ops::function::FnOnce::call_once::he1bccf68b35fd3e7 [INFO] [stderr] at /rustc/b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x5582e4eb3e6e - std::sys_common::backtrace::__rust_begin_short_backtrace::h7ce3c6346924a26a [INFO] [stderr] at /rustc/b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x5582e4eae471 - std::rt::lang_start::{{closure}}::hb7ae5125b446ad6a [INFO] [stderr] at /rustc/b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18/library/std/src/rt.rs:66:18 [INFO] [stderr] 19: 0x5582e50c7127 - core::ops::function::impls:: for &F>::call_once::h54c39b9b8451875a [INFO] [stderr] at /rustc/b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x5582e50c7127 - std::panicking::try::do_call::hcdfba51a06e21b42 [INFO] [stderr] at /rustc/b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18/library/std/src/panicking.rs:379:40 [INFO] [stderr] 21: 0x5582e50c7127 - std::panicking::try::hb36953ccd24f930d [INFO] [stderr] at /rustc/b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18/library/std/src/panicking.rs:343:19 [INFO] [stderr] 22: 0x5582e50c7127 - std::panic::catch_unwind::hbb374cd03beb3824 [INFO] [stderr] at /rustc/b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18/library/std/src/panic.rs:396:14 [INFO] [stderr] 23: 0x5582e50c7127 - std::rt::lang_start_internal::h97dca9624db2aa85 [INFO] [stderr] at /rustc/b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18/library/std/src/rt.rs:51:25 [INFO] [stderr] 24: 0x5582e4eae447 - std::rt::lang_start::he731128579e78037 [INFO] [stderr] at /rustc/b7ebc6b0c1ba3c27ebb17c0b496ece778ef11e18/library/std/src/rt.rs:65:5 [INFO] [stderr] 25: 0x5582e4ea8f0a - main [INFO] [stderr] 26: 0x7fd95bd170b3 - __libc_start_main [INFO] [stderr] 27: 0x5582e4ea10be - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "ebcf2fe75534bcc212c7a73dfa20e1c03a56c4acb3ed6bc9639a017160ca616a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ebcf2fe75534bcc212c7a73dfa20e1c03a56c4acb3ed6bc9639a017160ca616a", kill_on_drop: false }` [INFO] [stdout] ebcf2fe75534bcc212c7a73dfa20e1c03a56c4acb3ed6bc9639a017160ca616a