[INFO] fetching crate biofile 1.5.0... [INFO] testing biofile-1.5.0 against try#eafdee2dfae8c2233b74f98b123308be7ccefcc6 for pr-79296 [INFO] extracting crate biofile 1.5.0 into /workspace/builds/worker-2/source [INFO] validating manifest of crates.io crate biofile 1.5.0 on toolchain eafdee2dfae8c2233b74f98b123308be7ccefcc6 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+eafdee2dfae8c2233b74f98b123308be7ccefcc6" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate biofile 1.5.0 [INFO] finished tweaking crates.io crate biofile 1.5.0 [INFO] tweaked toml for crates.io crate biofile 1.5.0 written to /workspace/builds/worker-2/source/Cargo.toml [INFO] crate crates.io crate biofile 1.5.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+eafdee2dfae8c2233b74f98b123308be7ccefcc6" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+eafdee2dfae8c2233b74f98b123308be7ccefcc6" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 8a955e03e38403ecee0b472b32b1298cbd7f7cbd915b411b11aa704f7a7687a9 [INFO] running `Command { std: "docker" "start" "-a" "8a955e03e38403ecee0b472b32b1298cbd7f7cbd915b411b11aa704f7a7687a9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "8a955e03e38403ecee0b472b32b1298cbd7f7cbd915b411b11aa704f7a7687a9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8a955e03e38403ecee0b472b32b1298cbd7f7cbd915b411b11aa704f7a7687a9", kill_on_drop: false }` [INFO] [stdout] 8a955e03e38403ecee0b472b32b1298cbd7f7cbd915b411b11aa704f7a7687a9 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+eafdee2dfae8c2233b74f98b123308be7ccefcc6" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 656360a60fe4bee84eed384fb556842d4702ac28272a19af6a2eeda61d928bb8 [INFO] running `Command { std: "docker" "start" "-a" "656360a60fe4bee84eed384fb556842d4702ac28272a19af6a2eeda61d928bb8", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v0.1.6 [INFO] [stderr] Compiling libc v0.2.62 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling semver-parser v0.7.0 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling arrayvec v0.4.11 [INFO] [stderr] Compiling getrandom v0.1.12 [INFO] [stderr] Compiling nodrop v0.1.13 [INFO] [stderr] Compiling scopeguard v1.0.0 [INFO] [stderr] Compiling rayon-core v1.6.0 [INFO] [stderr] Compiling ppv-lite86 v0.2.5 [INFO] [stderr] Compiling bitflags v1.2.0 [INFO] [stderr] Compiling either v1.5.3 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling log v0.4.11 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling rawpointer v0.1.0 [INFO] [stderr] Compiling crossbeam-utils v0.6.6 [INFO] [stderr] Compiling itertools v0.7.11 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling semver v0.9.0 [INFO] [stderr] Compiling c2-chacha v0.2.2 [INFO] [stderr] Compiling num-traits v0.2.8 [INFO] [stderr] Compiling num-integer v0.1.41 [INFO] [stderr] Compiling num-bigint v0.2.3 [INFO] [stderr] Compiling num-complex v0.2.3 [INFO] [stderr] Compiling num-iter v0.1.39 [INFO] [stderr] Compiling num-rational v0.2.2 [INFO] [stderr] Compiling rustc_version v0.2.3 [INFO] [stderr] Compiling crossbeam-queue v0.1.2 [INFO] [stderr] Compiling memoffset v0.5.1 [INFO] [stderr] Compiling num_cpus v1.10.1 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling rand_chacha v0.2.1 [INFO] [stderr] Compiling rand v0.7.2 [INFO] [stderr] Compiling crossbeam-epoch v0.7.2 [INFO] [stderr] Compiling crossbeam-deque v0.7.1 [INFO] [stderr] Compiling rayon v1.2.0 [INFO] [stderr] Compiling program-flow v0.1.3 [INFO] [stderr] Compiling num v0.2.0 [INFO] [stderr] Compiling math v0.8.8 [INFO] [stderr] Compiling biofile v1.5.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 38.59s [INFO] running `Command { std: "docker" "inspect" "656360a60fe4bee84eed384fb556842d4702ac28272a19af6a2eeda61d928bb8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "656360a60fe4bee84eed384fb556842d4702ac28272a19af6a2eeda61d928bb8", kill_on_drop: false }` [INFO] [stdout] 656360a60fe4bee84eed384fb556842d4702ac28272a19af6a2eeda61d928bb8 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+eafdee2dfae8c2233b74f98b123308be7ccefcc6" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] b4b75500c2e89d988b7eb1ac52033a44ddd7e5f3eae41f5bafc2164d52735c74 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "b4b75500c2e89d988b7eb1ac52033a44ddd7e5f3eae41f5bafc2164d52735c74", kill_on_drop: false }` [INFO] [stderr] Compiling rand_core v0.4.2 [INFO] [stderr] Compiling remove_dir_all v0.5.2 [INFO] [stderr] Compiling rand_pcg v0.1.2 [INFO] [stderr] Compiling rand_chacha v0.1.1 [INFO] [stderr] Compiling rand v0.6.5 [INFO] [stderr] Compiling tempfile v3.1.0 [INFO] [stderr] Compiling rand_core v0.3.1 [INFO] [stderr] Compiling rand_os v0.1.3 [INFO] [stderr] Compiling rand_jitter v0.1.4 [INFO] [stderr] Compiling rand_hc v0.1.0 [INFO] [stderr] Compiling rand_isaac v0.1.1 [INFO] [stderr] Compiling rand_xorshift v0.1.1 [INFO] [stderr] Compiling ndarray-rand v0.9.0 [INFO] [stderr] Compiling biofile v1.5.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 13.73s [INFO] running `Command { std: "docker" "inspect" "b4b75500c2e89d988b7eb1ac52033a44ddd7e5f3eae41f5bafc2164d52735c74", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b4b75500c2e89d988b7eb1ac52033a44ddd7e5f3eae41f5bafc2164d52735c74", kill_on_drop: false }` [INFO] [stdout] b4b75500c2e89d988b7eb1ac52033a44ddd7e5f3eae41f5bafc2164d52735c74 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+eafdee2dfae8c2233b74f98b123308be7ccefcc6" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 8a89ba959e4964b2c148342db67d4e167b6ea8925c55716bc470fa585a43097e [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "8a89ba959e4964b2c148342db67d4e167b6ea8925c55716bc470fa585a43097e", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.13s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/biofile-d6f025a472a62e68 [INFO] [stdout] [INFO] [stdout] running 18 tests [INFO] [stdout] test plink_bed::plink_snps::tests::test_plink_snps ... ok [INFO] [stdout] test bed::tests::test_get_chrom_to_intervals ... ok [INFO] [stdout] test plink_bim::tests::test_fileline_partitions_iter ... ok [INFO] [stdout] test peak_file::tests::test_get_chrom_to_interval_to_val ... ok [INFO] [stdout] test peak_file::tests::test_get_chrom_to_peaks ... ok [INFO] [stdout] test bedgraph::tests::test_get_chrom_to_interval_to_val ... ok [INFO] [stdout] test plink_bed::plink_snps::tests::test_plink_snps_from_geno ... ok [INFO] [stdout] test bed::tests::test_get_chrom_to_interval_to_val ... ok [INFO] [stdout] test plink_bim::tests::test_get_all_chroms ... ok [INFO] [stdout] test plink_bed::tests::test_convert_to_dominance_representation ... ok [INFO] [stdout] test bed::bed_writer::tests::test_bed_writer ... ok [INFO] [stdout] test plink_bim::tests::test_get_fileline_partitions ... ok [INFO] [stdout] test bed::paired_end_collator::tests::test_collator ... ok [INFO] [stdout] test plink_bim::tests::test_get_chrom_to_positions ... ok [INFO] [stdout] test plink_bed::tests::test_chunk_iter ... ok [INFO] [stdout] test plink_bed::tests::test_create_dominance_geno_bed ... ok [INFO] [stdout] test plink_bed::tests::test_multiple_bfiles ... ok [INFO] [stderr] Running /opt/rustwide/target/debug/deps/collate_paired_end-6a4e227f2d8fe3fd [INFO] [stdout] test plink_bed::tests::test_create_bed ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 18 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Doc-tests biofile [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "8a89ba959e4964b2c148342db67d4e167b6ea8925c55716bc470fa585a43097e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8a89ba959e4964b2c148342db67d4e167b6ea8925c55716bc470fa585a43097e", kill_on_drop: false }` [INFO] [stdout] 8a89ba959e4964b2c148342db67d4e167b6ea8925c55716bc470fa585a43097e