[INFO] cloning repository https://github.com/zaeleus/noodles-count-features [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/zaeleus/noodles-count-features" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles-count-features", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles-count-features'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] b6d3370a561986e46e60c71f13111ef6b91a12fa [INFO] testing zaeleus/noodles-count-features against try#eafdee2dfae8c2233b74f98b123308be7ccefcc6 for pr-79296 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles-count-features" "/workspace/builds/worker-5/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-5/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/zaeleus/noodles-count-features on toolchain eafdee2dfae8c2233b74f98b123308be7ccefcc6 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+eafdee2dfae8c2233b74f98b123308be7ccefcc6" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/zaeleus/noodles-count-features [INFO] finished tweaking git repo https://github.com/zaeleus/noodles-count-features [INFO] tweaked toml for git repo https://github.com/zaeleus/noodles-count-features written to /workspace/builds/worker-5/source/Cargo.toml [INFO] crate git repo https://github.com/zaeleus/noodles-count-features already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+eafdee2dfae8c2233b74f98b123308be7ccefcc6" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating git repository `https://github.com/zaeleus/interval-tree.git` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded git-testament-derive v0.1.10 [INFO] [stderr] Downloaded bit-vec v0.6.2 [INFO] [stderr] Downloaded git-testament v0.1.9 [INFO] [stderr] Downloaded anyhow v1.0.34 [INFO] [stderr] Downloaded env_logger v0.8.2 [INFO] [stderr] Downloaded syn v1.0.50 [INFO] [stderr] Downloaded tokio v0.3.4 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+eafdee2dfae8c2233b74f98b123308be7ccefcc6" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] f8ef9b19465fd9f4a0f2fb66b59f0f34ddfb014f95cdbfce38c5482dffe865ba [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "f8ef9b19465fd9f4a0f2fb66b59f0f34ddfb014f95cdbfce38c5482dffe865ba", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "f8ef9b19465fd9f4a0f2fb66b59f0f34ddfb014f95cdbfce38c5482dffe865ba", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f8ef9b19465fd9f4a0f2fb66b59f0f34ddfb014f95cdbfce38c5482dffe865ba", kill_on_drop: false }` [INFO] [stdout] f8ef9b19465fd9f4a0f2fb66b59f0f34ddfb014f95cdbfce38c5482dffe865ba [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+eafdee2dfae8c2233b74f98b123308be7ccefcc6" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 47dac56b3a5cc15ad5f3a23b2517a4b4103d50dc7a5c7a7168a52b4774092efa [INFO] running `Command { std: "docker" "start" "-a" "47dac56b3a5cc15ad5f3a23b2517a4b4103d50dc7a5c7a7168a52b4774092efa", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.80 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling log v0.4.11 [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling regex-syntax v0.6.21 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling humantime v2.0.1 [INFO] [stderr] Compiling termcolor v1.1.2 [INFO] [stderr] Compiling slab v0.4.2 [INFO] [stderr] Compiling noodles-gff v0.1.0 (https://github.com/zaeleus/noodles.git?rev=e1714d9234f3435201bee56d13e48a73f86d1673#e1714d92) [INFO] [stderr] Compiling interval-tree v0.2.0 (https://github.com/zaeleus/interval-tree.git?rev=e303d7254d53de5c418d6079d4b66c30c10958d4#e303d725) [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling tokio v0.3.4 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling proc-macro2 v1.0.24 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Compiling aho-corasick v0.7.15 [INFO] [stderr] Compiling syn v1.0.50 [INFO] [stderr] Compiling flate2 v1.0.19 [INFO] [stderr] Compiling time v0.1.44 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling regex v1.4.2 [INFO] [stderr] Compiling chrono v0.4.19 [INFO] [stderr] Compiling noodles-bgzf v0.1.0 (https://github.com/zaeleus/noodles.git?rev=e1714d9234f3435201bee56d13e48a73f86d1673#e1714d92) [INFO] [stderr] Compiling noodles-sam v0.1.0 (https://github.com/zaeleus/noodles.git?rev=e1714d9234f3435201bee56d13e48a73f86d1673#e1714d92) [INFO] [stderr] Compiling env_logger v0.8.2 [INFO] [stderr] Compiling noodles v0.1.0 (https://github.com/zaeleus/noodles.git?rev=e1714d9234f3435201bee56d13e48a73f86d1673#e1714d92) [INFO] [stderr] Compiling noodles-bam v0.1.0 (https://github.com/zaeleus/noodles.git?rev=e1714d9234f3435201bee56d13e48a73f86d1673#e1714d92) [INFO] [stderr] Compiling git-testament-derive v0.1.10 [INFO] [stderr] Compiling git-testament v0.1.9 [INFO] [stderr] Compiling noodles-squab v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 02s [INFO] running `Command { std: "docker" "inspect" "47dac56b3a5cc15ad5f3a23b2517a4b4103d50dc7a5c7a7168a52b4774092efa", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "47dac56b3a5cc15ad5f3a23b2517a4b4103d50dc7a5c7a7168a52b4774092efa", kill_on_drop: false }` [INFO] [stdout] 47dac56b3a5cc15ad5f3a23b2517a4b4103d50dc7a5c7a7168a52b4774092efa [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+eafdee2dfae8c2233b74f98b123308be7ccefcc6" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 3dc56dc06606a07669f653c55ca98ee98a23cfaee2a15f5996743c74d63948f9 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "3dc56dc06606a07669f653c55ca98ee98a23cfaee2a15f5996743c74d63948f9", kill_on_drop: false }` [INFO] [stderr] Compiling noodles-squab v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 4.20s [INFO] running `Command { std: "docker" "inspect" "3dc56dc06606a07669f653c55ca98ee98a23cfaee2a15f5996743c74d63948f9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3dc56dc06606a07669f653c55ca98ee98a23cfaee2a15f5996743c74d63948f9", kill_on_drop: false }` [INFO] [stdout] 3dc56dc06606a07669f653c55ca98ee98a23cfaee2a15f5996743c74d63948f9 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+eafdee2dfae8c2233b74f98b123308be7ccefcc6" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] b17cdc464baef7269f47ecad2617756ede663ddf7f62f6320c6338211fd4c112 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "b17cdc464baef7269f47ecad2617756ede663ddf7f62f6320c6338211fd4c112", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.12s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/noodles_squab-25db1d8e30b2fbb6 [INFO] [stdout] [INFO] [stdout] running 25 tests [INFO] [stdout] test count::writer::tests::test_write_stats ... ok [INFO] [stdout] test count::writer::tests::test_write_counts ... ok [INFO] [stdout] test feature::tests::test_end ... ok [INFO] [stdout] test feature::tests::test_is_empty ... ok [INFO] [stdout] test feature::tests::test_start ... ok [INFO] [stdout] test feature::tests::test_len ... ok [INFO] [stdout] test feature::tests::test_strand ... ok [INFO] [stdout] test normalization::fpkm::tests::test_calculate_fpkms ... ok [INFO] [stderr] Running /opt/rustwide/target/debug/deps/noodles_squab-6b52003e96feec86 [INFO] [stdout] test count::reader::tests::test_read_counts ... ok [INFO] [stdout] test normalization::fpkm::tests::test_calculate_fpkms_with_missing_feature ... ok [INFO] [stdout] test normalization::tpm::tests::test_calculate_tpms_with_missing_feature ... ok [INFO] [stdout] test normalization::method::tests::test_from_str ... ok [INFO] [stdout] test normalization::tests::test_merge_features ... ok [INFO] [stdout] test normalization::tests::test_sum_nonoverlapping_feature_lengths ... ok [INFO] [stdout] test count::tests::test_get_reference ... ok [INFO] [stdout] test record_pairs::pair_position::tests::test_mate ... ok [INFO] [stdout] test normalization::writer::tests::test_write_values ... ok [INFO] [stdout] test count::context::tests::test_add ... ok [INFO] [stdout] test commands::tests::test_from_str ... ok [INFO] [stdout] test match_intervals::tests::test_next ... ok [INFO] [stdout] test feature::tests::test_reference_sequence_name ... ok [INFO] [stdout] test count::context::tests::test_add_event ... ok [INFO] [stdout] test normalization::tpm::tests::test_calculate_tpms ... ok [INFO] [stdout] test tests::test_read_features ... ok [INFO] [stdout] test record_pairs::pair_position::tests::test_try_from_flag ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 25 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Doc-tests noodles-squab [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "b17cdc464baef7269f47ecad2617756ede663ddf7f62f6320c6338211fd4c112", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b17cdc464baef7269f47ecad2617756ede663ddf7f62f6320c6338211fd4c112", kill_on_drop: false }` [INFO] [stdout] b17cdc464baef7269f47ecad2617756ede663ddf7f62f6320c6338211fd4c112