[INFO] cloning repository https://github.com/guertinlab/seqOutBias [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/guertinlab/seqOutBias" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fguertinlab%2FseqOutBias", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fguertinlab%2FseqOutBias'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 121327a717a5d48761392b78f1c89fa893dbcba7 [INFO] testing guertinlab/seqOutBias against try#eafdee2dfae8c2233b74f98b123308be7ccefcc6 for pr-79296 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fguertinlab%2FseqOutBias" "/workspace/builds/worker-10/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-10/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/guertinlab/seqOutBias on toolchain eafdee2dfae8c2233b74f98b123308be7ccefcc6 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+eafdee2dfae8c2233b74f98b123308be7ccefcc6" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/guertinlab/seqOutBias [INFO] finished tweaking git repo https://github.com/guertinlab/seqOutBias [INFO] tweaked toml for git repo https://github.com/guertinlab/seqOutBias written to /workspace/builds/worker-10/source/Cargo.toml [INFO] crate git repo https://github.com/guertinlab/seqOutBias already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+eafdee2dfae8c2233b74f98b123308be7ccefcc6" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded escargot v0.2.0 [INFO] [stderr] Downloaded syntex_syntax v0.24.0 [INFO] [stderr] Downloaded clap v1.5.6 [INFO] [stderr] Downloaded assert_cmd v0.4.0 [INFO] [stderr] Downloaded ieee754 v0.2.2 [INFO] [stderr] Downloaded predicates v0.5.2 [INFO] [stderr] Downloaded rusty-cheddar v0.3.3 [INFO] [stderr] Downloaded flate2 v0.2.18 [INFO] [stderr] Downloaded rust-htslib v0.12.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+eafdee2dfae8c2233b74f98b123308be7ccefcc6" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 8d6b61cabf0f6bce5e24254542b590ed8e349e6bf66a0ff0fa40d0d42d06ddd2 [INFO] running `Command { std: "docker" "start" "-a" "8d6b61cabf0f6bce5e24254542b590ed8e349e6bf66a0ff0fa40d0d42d06ddd2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "8d6b61cabf0f6bce5e24254542b590ed8e349e6bf66a0ff0fa40d0d42d06ddd2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8d6b61cabf0f6bce5e24254542b590ed8e349e6bf66a0ff0fa40d0d42d06ddd2", kill_on_drop: false }` [INFO] [stdout] 8d6b61cabf0f6bce5e24254542b590ed8e349e6bf66a0ff0fa40d0d42d06ddd2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+eafdee2dfae8c2233b74f98b123308be7ccefcc6" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 8c6f8f8a6b15b2564bd2c2facafcce86644e10d9687f180d0737e835f968a05e [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "8c6f8f8a6b15b2564bd2c2facafcce86644e10d9687f180d0737e835f968a05e", kill_on_drop: false }` [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling matches v0.1.6 [INFO] [stderr] Compiling gcc v0.3.45 [INFO] [stderr] Compiling unicode-normalization v0.1.5 [INFO] [stderr] Compiling rust-htslib v0.12.1 [INFO] [stderr] Compiling lazy_static v0.2.6 [INFO] [stderr] Compiling utf8-ranges v0.1.3 [INFO] [stderr] Compiling rustc-serialize v0.3.23 [INFO] [stderr] Compiling regex-syntax v0.3.9 [INFO] [stderr] Compiling strsim v0.5.2 [INFO] [stderr] Compiling num-traits v0.1.37 [INFO] [stderr] Compiling quick-error v1.2.0 [INFO] [stderr] Compiling serde v0.7.15 [INFO] [stderr] Compiling ieee754 v0.2.2 [INFO] [stderr] Compiling memchr v0.1.11 [INFO] [stderr] Compiling itertools v0.6.0 [INFO] [stderr] Compiling rand v0.3.22 [INFO] [stderr] Compiling kernel32-sys v0.2.2 [INFO] [stderr] Compiling unicode-bidi v0.3.4 [INFO] [stderr] Compiling aho-corasick v0.5.3 [INFO] [stderr] Compiling tempfile v2.2.0 [INFO] [stderr] Compiling thread-id v2.0.0 [INFO] [stderr] Compiling thread_local v0.2.7 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling idna v0.1.2 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling seqOutBias v1.2.0 (/opt/rustwide/workdir) [INFO] [stderr] Compiling miniz-sys v0.1.9 [INFO] [stderr] Compiling regex v0.1.80 [INFO] [stderr] Compiling flate2 v0.2.18 [INFO] [stderr] Compiling url v1.7.2 [INFO] [stderr] Compiling bincode v0.5.9 [INFO] [stderr] Compiling docopt v0.6.86 [INFO] [stdout] error: could not find native static library `hts`, perhaps an -L flag is missing? [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to previous error [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `rust-htslib` [INFO] [stderr] [INFO] [stderr] To learn more, run the command again with --verbose. [INFO] running `Command { std: "docker" "inspect" "8c6f8f8a6b15b2564bd2c2facafcce86644e10d9687f180d0737e835f968a05e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8c6f8f8a6b15b2564bd2c2facafcce86644e10d9687f180d0737e835f968a05e", kill_on_drop: false }` [INFO] [stdout] 8c6f8f8a6b15b2564bd2c2facafcce86644e10d9687f180d0737e835f968a05e