[INFO] fetching crate gb-io 0.6.0... [INFO] testing gb-io-0.6.0 against master#5d5ff84130da0d74c6ece368dbe821d8f83fa526 for pr-79296 [INFO] extracting crate gb-io 0.6.0 into /workspace/builds/worker-7/source [INFO] validating manifest of crates.io crate gb-io 0.6.0 on toolchain 5d5ff84130da0d74c6ece368dbe821d8f83fa526 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate gb-io 0.6.0 [INFO] finished tweaking crates.io crate gb-io 0.6.0 [INFO] tweaked toml for crates.io crate gb-io 0.6.0 written to /workspace/builds/worker-7/source/Cargo.toml [INFO] crate crates.io crate gb-io 0.6.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 1fb84c02324f073c432c5a055bc0a700fc450f227b8b5e5a8eb71f84410237ac [INFO] running `Command { std: "docker" "start" "-a" "1fb84c02324f073c432c5a055bc0a700fc450f227b8b5e5a8eb71f84410237ac", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "1fb84c02324f073c432c5a055bc0a700fc450f227b8b5e5a8eb71f84410237ac", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1fb84c02324f073c432c5a055bc0a700fc450f227b8b5e5a8eb71f84410237ac", kill_on_drop: false }` [INFO] [stdout] 1fb84c02324f073c432c5a055bc0a700fc450f227b8b5e5a8eb71f84410237ac [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 8276fc5cd01023a91d0e6a2778602cd7c6d10a20f1f22771cfa1b3b865ab4f7d [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "8276fc5cd01023a91d0e6a2778602cd7c6d10a20f1f22771cfa1b3b865ab4f7d", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.9 [INFO] [stderr] Compiling syn v1.0.16 [INFO] [stderr] Compiling libc v0.2.67 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling autocfg v0.1.7 [INFO] [stderr] Compiling serde v1.0.104 [INFO] [stderr] Compiling rand_core v0.4.2 [INFO] [stderr] Compiling getrandom v0.1.14 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Compiling ppv-lite86 v0.2.6 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling version_check v0.9.1 [INFO] [stderr] Compiling siphasher v0.3.1 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Compiling cc v1.0.50 [INFO] [stderr] Compiling syn v0.15.44 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling rustversion v1.0.2 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling ryu v1.0.2 [INFO] [stderr] Compiling either v1.5.3 [INFO] [stderr] Compiling doc-comment v0.3.2 [INFO] [stderr] Compiling ndarray v0.13.0 [INFO] [stderr] Compiling regex-syntax v0.6.16 [INFO] [stderr] Compiling rustc-demangle v0.1.16 [INFO] [stderr] Compiling ordermap v0.3.5 [INFO] [stderr] Compiling fixedbitset v0.1.9 [INFO] [stderr] Compiling bit-vec v0.5.1 [INFO] [stderr] Compiling itoa v0.4.5 [INFO] [stderr] Compiling bio v0.30.0 [INFO] [stderr] Compiling precomputed-hash v0.1.1 [INFO] [stderr] Compiling strum v0.16.0 [INFO] [stderr] Compiling fnv v1.0.6 [INFO] [stderr] Compiling new_debug_unreachable v1.0.4 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling bytecount v0.6.0 [INFO] [stderr] Compiling circular v0.3.0 [INFO] [stderr] Compiling num-traits v0.2.11 [INFO] [stderr] Compiling num-integer v0.1.42 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling rand_core v0.3.1 [INFO] [stderr] Compiling rand_jitter v0.1.4 [INFO] [stderr] Compiling phf_shared v0.8.0 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling itertools v0.8.2 [INFO] [stderr] Compiling itertools v0.9.0 [INFO] [stderr] Compiling nom v4.2.3 [INFO] [stderr] Compiling c2-chacha v0.2.3 [INFO] [stderr] Compiling bv v0.11.0 [INFO] [stderr] Compiling proc-macro-error-attr v0.4.11 [INFO] [stderr] Compiling proc-macro-error v0.4.11 [INFO] [stderr] Compiling rand_chacha v0.1.1 [INFO] [stderr] Compiling rand_pcg v0.1.2 [INFO] [stderr] Compiling rand v0.6.5 [INFO] [stderr] Compiling bit-set v0.5.1 [INFO] [stderr] Compiling rand_isaac v0.1.1 [INFO] [stderr] Compiling rand_hc v0.1.0 [INFO] [stderr] Compiling rand_xorshift v0.1.1 [INFO] [stderr] Compiling petgraph v0.4.13 [INFO] [stderr] Compiling log v0.4.8 [INFO] [stderr] Compiling csv-core v0.1.10 [INFO] [stderr] Compiling regex-automata v0.1.9 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling backtrace-sys v0.1.33 [INFO] [stderr] Compiling quote v0.6.13 [INFO] [stderr] Compiling rand_os v0.1.3 [INFO] [stderr] Compiling quote v1.0.3 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling rand_chacha v0.2.1 [INFO] [stderr] Compiling rand_pcg v0.2.1 [INFO] [stderr] Compiling rand v0.7.3 [INFO] [stderr] Compiling backtrace v0.3.45 [INFO] [stderr] Compiling ordered-float v1.0.2 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling approx v0.3.2 [INFO] [stderr] Compiling regex v1.3.4 [INFO] [stderr] Compiling statrs v0.11.0 [INFO] [stderr] Compiling phf_generator v0.8.0 [INFO] [stderr] Compiling string_cache_codegen v0.5.1 [INFO] [stderr] Compiling gb-io v0.6.0 (/opt/rustwide/workdir) [INFO] [stderr] Compiling snafu-derive v0.5.0 [INFO] [stderr] Compiling syn-mid v0.5.0 [INFO] [stderr] Compiling synstructure v0.12.3 [INFO] [stderr] Compiling snafu v0.5.0 [INFO] [stderr] Compiling serde_derive v1.0.104 [INFO] [stderr] Compiling getset v0.0.9 [INFO] [stderr] Compiling strum_macros v0.16.0 [INFO] [stderr] Compiling err-derive v0.2.3 [INFO] [stderr] Compiling bstr v0.2.11 [INFO] [stderr] Compiling multimap v0.6.0 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling bio-types v0.5.1 [INFO] [stderr] Compiling string_cache v0.8.0 [INFO] [stderr] Compiling serde_bytes v0.11.3 [INFO] [stderr] Compiling csv v1.1.3 [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 2m 09s [INFO] running `Command { std: "docker" "inspect" "8276fc5cd01023a91d0e6a2778602cd7c6d10a20f1f22771cfa1b3b865ab4f7d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8276fc5cd01023a91d0e6a2778602cd7c6d10a20f1f22771cfa1b3b865ab4f7d", kill_on_drop: false }` [INFO] [stdout] 8276fc5cd01023a91d0e6a2778602cd7c6d10a20f1f22771cfa1b3b865ab4f7d [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] d5a41d69ff47b6b944cd459ac250f7ea96d4db215014f56255015082e03f964c [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "d5a41d69ff47b6b944cd459ac250f7ea96d4db215014f56255015082e03f964c", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling bencher v0.1.5 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling gb-io v0.6.0 (/opt/rustwide/workdir) [INFO] [stdout] error: couldn't read src/../tests/mg1655.gb: No such file or directory (os error 2) [INFO] [stdout] --> src/lib.rs:72:21 [INFO] [stdout] | [INFO] [stdout] 72 | let ecoli = include_bytes!("../tests/mg1655.gb"); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this error originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: couldn't read src/../tests/circ.gb: No such file or directory (os error 2) [INFO] [stdout] --> src/lib.rs:88:32 [INFO] [stdout] | [INFO] [stdout] 88 | let circ = parse_slice(include_bytes!("../tests/circ.gb")).unwrap(); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this error originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: couldn't read src/../tests/circ.gb: No such file or directory (os error 2) [INFO] [stdout] --> src/lib.rs:95:32 [INFO] [stdout] | [INFO] [stdout] 95 | let circ = parse_slice(include_bytes!("../tests/circ.gb")).unwrap().pop().unwrap(); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this error originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: couldn't read src/../tests/biopython_tests/ls_orchid.gb: No such file or directory (os error 2) [INFO] [stdout] --> src/lib.rs:114:25 [INFO] [stdout] | [INFO] [stdout] 114 | parse_slice(include_bytes!("../tests/biopython_tests/ls_orchid.gb")).unwrap(); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this error originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 4 previous errors [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `gb-io` [INFO] [stderr] [INFO] [stderr] To learn more, run the command again with --verbose. [INFO] running `Command { std: "docker" "inspect" "d5a41d69ff47b6b944cd459ac250f7ea96d4db215014f56255015082e03f964c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d5a41d69ff47b6b944cd459ac250f7ea96d4db215014f56255015082e03f964c", kill_on_drop: false }` [INFO] [stdout] d5a41d69ff47b6b944cd459ac250f7ea96d4db215014f56255015082e03f964c