[INFO] fetching crate d4-hts 0.1.15... [INFO] testing d4-hts-0.1.15 against master#5d5ff84130da0d74c6ece368dbe821d8f83fa526 for pr-79296 [INFO] extracting crate d4-hts 0.1.15 into /workspace/builds/worker-9/source [INFO] validating manifest of crates.io crate d4-hts 0.1.15 on toolchain 5d5ff84130da0d74c6ece368dbe821d8f83fa526 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate d4-hts 0.1.15 [INFO] finished tweaking crates.io crate d4-hts 0.1.15 [INFO] tweaked toml for crates.io crate d4-hts 0.1.15 written to /workspace/builds/worker-9/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] edc03158ddcac5867a00ba0e4e955c1569ad1d6331a2103d8bf7a389463962ee [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "edc03158ddcac5867a00ba0e4e955c1569ad1d6331a2103d8bf7a389463962ee", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "edc03158ddcac5867a00ba0e4e955c1569ad1d6331a2103d8bf7a389463962ee", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "edc03158ddcac5867a00ba0e4e955c1569ad1d6331a2103d8bf7a389463962ee", kill_on_drop: false }` [INFO] [stdout] edc03158ddcac5867a00ba0e4e955c1569ad1d6331a2103d8bf7a389463962ee [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 46bd8a5a50244b5437306bb0d61950b315687731003023eb398c00dd4aea65f2 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "46bd8a5a50244b5437306bb0d61950b315687731003023eb398c00dd4aea65f2", kill_on_drop: false }` [INFO] [stderr] Compiling version_check v0.9.2 [INFO] [stderr] Compiling proc-macro2 v1.0.24 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling clang-sys v1.0.3 [INFO] [stderr] Compiling libloading v0.6.5 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling d4-hts v0.1.15 (/opt/rustwide/workdir) [INFO] [stderr] error: failed to run custom build command for `d4-hts v0.1.15 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/d4-hts-5c86e15ca6fe3e9c/build-script-build` (exit code: 101) [INFO] [stderr] --- stderr [INFO] [stderr] + pushd /opt/rustwide/target/debug/build/d4-hts-bb8c15b57219bc3f/out [INFO] [stderr] + HTSLIB_VERSION=1.11 [INFO] [stderr] + rm -rf /opt/rustwide/target/debug/build/d4-hts-bb8c15b57219bc3f/out/htslib [INFO] [stderr] + git clone -b 1.11 https://github.com/samtools/htslib.git [INFO] [stderr] Cloning into 'htslib'... [INFO] [stderr] fatal: unable to access 'https://github.com/samtools/htslib.git/': Could not resolve host: github.com [INFO] [stderr] thread 'main' panicked at 'assertion failed: Command::new(\"bash\").args(&[\"build_htslib.sh\",\n &version]).stdout(std::process::Stdio::null()).spawn().expect(\"Unable to build htslib\").wait().unwrap().success()', build.rs:34:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5638144c00f0 - std::backtrace_rs::backtrace::libunwind::trace::h95fc93571932622e [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x5638144c00f0 - std::backtrace_rs::backtrace::trace_unsynchronized::h4d0b90afc33151fd [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x5638144c00f0 - std::sys_common::backtrace::_print_fmt::h93d302d001a3bf01 [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x5638144c00f0 - ::fmt::h7881e3a580134f9a [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x5638144e62bc - core::fmt::write::h1857a60b204f1b6a [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/core/src/fmt/mod.rs:1078:17 [INFO] [stderr] 5: 0x5638144bc262 - std::io::Write::write_fmt::h24485de26f355188 [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/std/src/io/mod.rs:1519:15 [INFO] [stderr] 6: 0x5638144c28f5 - std::sys_common::backtrace::_print::h3e3f9fed81bc11e9 [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x5638144c28f5 - std::sys_common::backtrace::print::hd22ac23fed5071c8 [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x5638144c28f5 - std::panicking::default_hook::{{closure}}::h1647bdcf68060e17 [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x5638144c244a - std::panicking::default_hook::hb08853b392b9404b [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x5638144c3091 - std::panicking::rust_panic_with_hook::h3624ee29da369ede [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x5638144c2ba7 - std::panicking::begin_panic_handler::{{closure}}::hefcfcedcde6bb6d9 [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/std/src/panicking.rs:495:13 [INFO] [stderr] 12: 0x5638144c05ac - std::sys_common::backtrace::__rust_end_short_backtrace::heb130cec93caa706 [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x5638144c2b39 - rust_begin_unwind [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/std/src/panicking.rs:493:5 [INFO] [stderr] 14: 0x5638144e4961 - core::panicking::panic_fmt::hb15d6f55e8472f62 [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/core/src/panicking.rs:92:14 [INFO] [stderr] 15: 0x5638144e48ad - core::panicking::panic::h5d1c61fed2502a5f [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/core/src/panicking.rs:50:5 [INFO] [stderr] 16: 0x563813f319c1 - build_script_build::build_own_htslib::h02572f275786d321 [INFO] [stderr] at /opt/rustwide/workdir/build.rs:34:5 [INFO] [stderr] 17: 0x563813f31e94 - build_script_build::main::h01737229d4845b72 [INFO] [stderr] at /opt/rustwide/workdir/build.rs:66:9 [INFO] [stderr] 18: 0x563813f32d4b - core::ops::function::FnOnce::call_once::h311ce383f55638f9 [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 19: 0x563813f32c2e - std::sys_common::backtrace::__rust_begin_short_backtrace::h1fd9bad11363b09e [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 20: 0x563813f33351 - std::rt::lang_start::{{closure}}::h4fc0c294f11b5ec7 [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/std/src/rt.rs:66:18 [INFO] [stderr] 21: 0x5638144c34b7 - core::ops::function::impls:: for &F>::call_once::h194d6aa01fb6b594 [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 22: 0x5638144c34b7 - std::panicking::try::do_call::h4ef477456776cccb [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/std/src/panicking.rs:379:40 [INFO] [stderr] 23: 0x5638144c34b7 - std::panicking::try::h7f2121b6bb3bbca4 [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/std/src/panicking.rs:343:19 [INFO] [stderr] 24: 0x5638144c34b7 - std::panic::catch_unwind::he974d0ca04309948 [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/std/src/panic.rs:396:14 [INFO] [stderr] 25: 0x5638144c34b7 - std::rt::lang_start_internal::h36e9e78490120b9f [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/std/src/rt.rs:51:25 [INFO] [stderr] 26: 0x563813f33327 - std::rt::lang_start::hb2ce5feaa151abcf [INFO] [stderr] at /rustc/5d5ff84130da0d74c6ece368dbe821d8f83fa526/library/std/src/rt.rs:65:5 [INFO] [stderr] 27: 0x563813f324ca - main [INFO] [stderr] 28: 0x7fd1238cb0b3 - __libc_start_main [INFO] [stderr] 29: 0x563813f310be - _start [INFO] [stderr] 30: 0x0 - [INFO] running `Command { std: "docker" "inspect" "46bd8a5a50244b5437306bb0d61950b315687731003023eb398c00dd4aea65f2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "46bd8a5a50244b5437306bb0d61950b315687731003023eb398c00dd4aea65f2", kill_on_drop: false }` [INFO] [stdout] 46bd8a5a50244b5437306bb0d61950b315687731003023eb398c00dd4aea65f2