[INFO] fetching crate biofile 1.5.0... [INFO] testing biofile-1.5.0 against master#5d5ff84130da0d74c6ece368dbe821d8f83fa526 for pr-79296 [INFO] extracting crate biofile 1.5.0 into /workspace/builds/worker-9/source [INFO] validating manifest of crates.io crate biofile 1.5.0 on toolchain 5d5ff84130da0d74c6ece368dbe821d8f83fa526 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate biofile 1.5.0 [INFO] finished tweaking crates.io crate biofile 1.5.0 [INFO] tweaked toml for crates.io crate biofile 1.5.0 written to /workspace/builds/worker-9/source/Cargo.toml [INFO] crate crates.io crate biofile 1.5.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 5933437ed85f31b58172803bb5d9b81de41d7d41a20cbe47365df7205d974a55 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "5933437ed85f31b58172803bb5d9b81de41d7d41a20cbe47365df7205d974a55", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "5933437ed85f31b58172803bb5d9b81de41d7d41a20cbe47365df7205d974a55", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5933437ed85f31b58172803bb5d9b81de41d7d41a20cbe47365df7205d974a55", kill_on_drop: false }` [INFO] [stdout] 5933437ed85f31b58172803bb5d9b81de41d7d41a20cbe47365df7205d974a55 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] cea2d3123811ca586e6c6b2ef42f9a0fad040879d70c73cd4f3400b5a5f8b301 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "cea2d3123811ca586e6c6b2ef42f9a0fad040879d70c73cd4f3400b5a5f8b301", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v0.1.6 [INFO] [stderr] Compiling libc v0.2.62 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling semver-parser v0.7.0 [INFO] [stderr] Compiling arrayvec v0.4.11 [INFO] [stderr] Compiling nodrop v0.1.13 [INFO] [stderr] Compiling getrandom v0.1.12 [INFO] [stderr] Compiling scopeguard v1.0.0 [INFO] [stderr] Compiling bitflags v1.2.0 [INFO] [stderr] Compiling ppv-lite86 v0.2.5 [INFO] [stderr] Compiling either v1.5.3 [INFO] [stderr] Compiling rayon-core v1.6.0 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Compiling rawpointer v0.1.0 [INFO] [stderr] Compiling crossbeam-utils v0.6.6 [INFO] [stderr] Compiling itertools v0.7.11 [INFO] [stderr] Compiling semver v0.9.0 [INFO] [stderr] Compiling crossbeam-queue v0.1.2 [INFO] [stderr] Compiling c2-chacha v0.2.2 [INFO] [stderr] Compiling num-traits v0.2.8 [INFO] [stderr] Compiling num-integer v0.1.41 [INFO] [stderr] Compiling num-bigint v0.2.3 [INFO] [stderr] Compiling num-complex v0.2.3 [INFO] [stderr] Compiling num-rational v0.2.2 [INFO] [stderr] Compiling num-iter v0.1.39 [INFO] [stderr] Compiling rustc_version v0.2.3 [INFO] [stderr] Compiling memoffset v0.5.1 [INFO] [stderr] Compiling num_cpus v1.10.1 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling crossbeam-epoch v0.7.2 [INFO] [stderr] Compiling rand_chacha v0.2.1 [INFO] [stderr] Compiling rand v0.7.2 [INFO] [stderr] Compiling crossbeam-deque v0.7.1 [INFO] [stderr] Compiling rayon v1.2.0 [INFO] [stderr] Compiling num v0.2.0 [INFO] [stderr] Compiling program-flow v0.1.3 [INFO] [stderr] Compiling math v0.8.8 [INFO] [stderr] Compiling biofile v1.5.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 37.87s [INFO] running `Command { std: "docker" "inspect" "cea2d3123811ca586e6c6b2ef42f9a0fad040879d70c73cd4f3400b5a5f8b301", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "cea2d3123811ca586e6c6b2ef42f9a0fad040879d70c73cd4f3400b5a5f8b301", kill_on_drop: false }` [INFO] [stdout] cea2d3123811ca586e6c6b2ef42f9a0fad040879d70c73cd4f3400b5a5f8b301 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] cbd57650900d7d15d4c67c5d659296e98f0651cb74d2fdb74c30e22f0ecffddf [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "cbd57650900d7d15d4c67c5d659296e98f0651cb74d2fdb74c30e22f0ecffddf", kill_on_drop: false }` [INFO] [stderr] Compiling rand_core v0.4.2 [INFO] [stderr] Compiling remove_dir_all v0.5.2 [INFO] [stderr] Compiling rand_pcg v0.1.2 [INFO] [stderr] Compiling rand_chacha v0.1.1 [INFO] [stderr] Compiling rand v0.6.5 [INFO] [stderr] Compiling tempfile v3.1.0 [INFO] [stderr] Compiling rand_core v0.3.1 [INFO] [stderr] Compiling rand_os v0.1.3 [INFO] [stderr] Compiling rand_jitter v0.1.4 [INFO] [stderr] Compiling rand_xorshift v0.1.1 [INFO] [stderr] Compiling rand_isaac v0.1.1 [INFO] [stderr] Compiling rand_hc v0.1.0 [INFO] [stderr] Compiling ndarray-rand v0.9.0 [INFO] [stderr] Compiling biofile v1.5.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 14.42s [INFO] running `Command { std: "docker" "inspect" "cbd57650900d7d15d4c67c5d659296e98f0651cb74d2fdb74c30e22f0ecffddf", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "cbd57650900d7d15d4c67c5d659296e98f0651cb74d2fdb74c30e22f0ecffddf", kill_on_drop: false }` [INFO] [stdout] cbd57650900d7d15d4c67c5d659296e98f0651cb74d2fdb74c30e22f0ecffddf [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] d0f15f9f7344d5848d02aff54b8b7a45c027e0390d193f558674aa9676677373 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "d0f15f9f7344d5848d02aff54b8b7a45c027e0390d193f558674aa9676677373", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.09s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/biofile-d6f025a472a62e68 [INFO] [stdout] [INFO] [stdout] running 18 tests [INFO] [stdout] test plink_bed::plink_snps::tests::test_plink_snps ... ok [INFO] [stdout] test plink_bed::plink_snps::tests::test_plink_snps_from_geno ... ok [INFO] [stdout] test peak_file::tests::test_get_chrom_to_peaks ... ok [INFO] [stdout] test peak_file::tests::test_get_chrom_to_interval_to_val ... ok [INFO] [stdout] test bedgraph::tests::test_get_chrom_to_interval_to_val ... ok [INFO] [stdout] test bed::bed_writer::tests::test_bed_writer ... ok [INFO] [stdout] test plink_bed::tests::test_convert_to_dominance_representation ... ok [INFO] [stdout] test bed::tests::test_get_chrom_to_interval_to_val ... ok [INFO] [stdout] test plink_bim::tests::test_fileline_partitions_iter ... ok [INFO] [stdout] test bed::paired_end_collator::tests::test_collator ... ok [INFO] [stdout] test plink_bim::tests::test_get_all_chroms ... ok [INFO] [stdout] test plink_bim::tests::test_get_fileline_partitions ... ok [INFO] [stdout] test plink_bim::tests::test_get_chrom_to_positions ... ok [INFO] [stdout] test bed::tests::test_get_chrom_to_intervals ... ok [INFO] [stdout] test plink_bed::tests::test_create_bed ... ok [INFO] [stdout] test plink_bed::tests::test_create_dominance_geno_bed ... ok [INFO] [stdout] test plink_bed::tests::test_chunk_iter ... ok [INFO] [stdout] test plink_bed::tests::test_multiple_bfiles ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 18 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Running /opt/rustwide/target/debug/deps/collate_paired_end-6a4e227f2d8fe3fd [INFO] [stdout] [INFO] [stderr] Doc-tests biofile [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "d0f15f9f7344d5848d02aff54b8b7a45c027e0390d193f558674aa9676677373", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d0f15f9f7344d5848d02aff54b8b7a45c027e0390d193f558674aa9676677373", kill_on_drop: false }` [INFO] [stdout] d0f15f9f7344d5848d02aff54b8b7a45c027e0390d193f558674aa9676677373