[INFO] cloning repository https://github.com/sveint/bamstats
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/sveint/bamstats" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsveint%2Fbamstats", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsveint%2Fbamstats'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 7e79d502a15c6fabeeeb0ef2974803da91562565
[INFO] testing sveint/bamstats against master#5d5ff84130da0d74c6ece368dbe821d8f83fa526 for pr-79296
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsveint%2Fbamstats" "/workspace/builds/worker-8/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-8/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/sveint/bamstats on toolchain 5d5ff84130da0d74c6ece368dbe821d8f83fa526
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/sveint/bamstats
[INFO] finished tweaking git repo https://github.com/sveint/bamstats
[INFO] tweaked toml for git repo https://github.com/sveint/bamstats written to /workspace/builds/worker-8/source/Cargo.toml
[INFO] crate git repo https://github.com/sveint/bamstats already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] error: the lock file /workspace/builds/worker-8/source/Cargo.lock needs to be updated but --locked was passed to prevent this
[INFO] [stderr] If you want to try to generate the lock file without accessing the network, use the --offline flag.
[INFO] the lockfile is outdated, regenerating it
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c8ac004eab7d63a0ad09a2dde3d3353ba464f767bee4de425dc8f74c46a1905e" "/opt/rustwide/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] da1540b7efd5e8cd11575f1024d0bb5129088b5ab64a38b38370108c29c214f6
[INFO] running `Command { std: "docker" "start" "-a" "da1540b7efd5e8cd11575f1024d0bb5129088b5ab64a38b38370108c29c214f6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "da1540b7efd5e8cd11575f1024d0bb5129088b5ab64a38b38370108c29c214f6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "da1540b7efd5e8cd11575f1024d0bb5129088b5ab64a38b38370108c29c214f6", kill_on_drop: false }`
[INFO] [stdout] da1540b7efd5e8cd11575f1024d0bb5129088b5ab64a38b38370108c29c214f6
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c8ac004eab7d63a0ad09a2dde3d3353ba464f767bee4de425dc8f74c46a1905e" "/opt/rustwide/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 935f34f49187b431107fe7429998869d74e2162304b6139c9805593a67760ed8
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "935f34f49187b431107fe7429998869d74e2162304b6139c9805593a67760ed8", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling syn v1.0.53
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]    Compiling ryu v1.0.5
[INFO] [stderr]    Compiling unicode-segmentation v1.7.1
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling array-macro v1.0.5
[INFO] [stderr]    Compiling rust-htslib v0.5.2
[INFO] [stderr]    Compiling bio v0.32.0
[INFO] [stderr]    Compiling fixedbitset v0.2.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling triple_accel v0.3.4
[INFO] [stderr]    Compiling strum v0.18.0
[INFO] [stderr]    Compiling fnv v1.0.7
[INFO] [stderr]    Compiling bytecount v0.6.1
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling itertools v0.9.0
[INFO] [stderr]    Compiling matrixmultiply v0.2.3
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling getrandom v0.1.15
[INFO] [stderr]    Compiling regex-automata v0.1.9
[INFO] [stderr]    Compiling indexmap v1.6.0
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling ordered-float v1.1.0
[INFO] [stderr]    Compiling approx v0.3.2
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling regex v1.4.2
[INFO] [stderr]    Compiling heck v0.3.1
[INFO] [stderr]    Compiling rand_core v0.5.1
[INFO] [stderr]    Compiling rand_chacha v0.2.2
[INFO] [stderr]    Compiling petgraph v0.5.1
[INFO] [stderr]    Compiling rand v0.7.3
[INFO] [stdout] error: could not find native static library `hts`, perhaps an -L flag is missing?
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to previous error
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `rust-htslib`
[INFO] [stderr] 
[INFO] [stderr] To learn more, run the command again with --verbose.
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: build failed
[INFO] running `Command { std: "docker" "inspect" "935f34f49187b431107fe7429998869d74e2162304b6139c9805593a67760ed8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "935f34f49187b431107fe7429998869d74e2162304b6139c9805593a67760ed8", kill_on_drop: false }`
[INFO] [stdout] 935f34f49187b431107fe7429998869d74e2162304b6139c9805593a67760ed8