[INFO] cloning repository https://github.com/stjude/fqlib [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/stjude/fqlib" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstjude%2Ffqlib", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstjude%2Ffqlib'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 18f4dcf751ed1f4c3cc8a5287c2fe97994a596a8 [INFO] testing stjude/fqlib against master#5d5ff84130da0d74c6ece368dbe821d8f83fa526 for pr-79296 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstjude%2Ffqlib" "/workspace/builds/worker-6/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-6/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/stjude/fqlib on toolchain 5d5ff84130da0d74c6ece368dbe821d8f83fa526 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/stjude/fqlib [INFO] finished tweaking git repo https://github.com/stjude/fqlib [INFO] tweaked toml for git repo https://github.com/stjude/fqlib written to /workspace/builds/worker-6/source/Cargo.toml [INFO] crate git repo https://github.com/stjude/fqlib already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c8ac004eab7d63a0ad09a2dde3d3353ba464f767bee4de425dc8f74c46a1905e" "/opt/rustwide/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] d223b15313dcb655c74842938bf74ed97c730e0773aa1d9c71d8fe761503554b [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "d223b15313dcb655c74842938bf74ed97c730e0773aa1d9c71d8fe761503554b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "d223b15313dcb655c74842938bf74ed97c730e0773aa1d9c71d8fe761503554b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d223b15313dcb655c74842938bf74ed97c730e0773aa1d9c71d8fe761503554b", kill_on_drop: false }` [INFO] [stdout] d223b15313dcb655c74842938bf74ed97c730e0773aa1d9c71d8fe761503554b [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c8ac004eab7d63a0ad09a2dde3d3353ba464f767bee4de425dc8f74c46a1905e" "/opt/rustwide/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 06635014b49cbc689f9d79778466cf6ca3495b2f15ba2582a4af4c6151898618 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "06635014b49cbc689f9d79778466cf6ca3495b2f15ba2582a4af4c6151898618", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.80 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling getrandom v0.1.15 [INFO] [stderr] Compiling proc-macro2 v1.0.24 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling syn v1.0.48 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling ppv-lite86 v0.2.10 [INFO] [stderr] Compiling anyhow v1.0.34 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling regex-syntax v0.6.21 [INFO] [stderr] Compiling humantime v2.0.1 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling miniz_oxide v0.4.3 [INFO] [stderr] Compiling log v0.4.11 [INFO] [stderr] Compiling crc32fast v1.2.1 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Compiling time v0.1.44 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling bbloom v0.1.0 (https://github.com/zaeleus/bbloom.git?tag=v0.1.0#2c9f6163) [INFO] [stderr] Compiling flate2 v1.0.19 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling chrono v0.4.19 [INFO] [stderr] Compiling rand_chacha v0.2.2 [INFO] [stderr] Compiling rand_pcg v0.2.1 [INFO] [stderr] Compiling regex v1.4.2 [INFO] [stderr] Compiling rand v0.7.3 [INFO] [stderr] Compiling rand_distr v0.3.0 [INFO] [stderr] Compiling env_logger v0.8.2 [INFO] [stderr] Compiling git-testament-derive v0.1.10 [INFO] [stderr] Compiling git-testament v0.1.9 [INFO] [stderr] Compiling fqlib v0.5.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 52.34s [INFO] running `Command { std: "docker" "inspect" "06635014b49cbc689f9d79778466cf6ca3495b2f15ba2582a4af4c6151898618", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "06635014b49cbc689f9d79778466cf6ca3495b2f15ba2582a4af4c6151898618", kill_on_drop: false }` [INFO] [stdout] 06635014b49cbc689f9d79778466cf6ca3495b2f15ba2582a4af4c6151898618 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c8ac004eab7d63a0ad09a2dde3d3353ba464f767bee4de425dc8f74c46a1905e" "/opt/rustwide/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 158ad4226ee87e1564832adc4400ef370741e114e23d7377e08c7244c58bf82f [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "158ad4226ee87e1564832adc4400ef370741e114e23d7377e08c7244c58bf82f", kill_on_drop: false }` [INFO] [stderr] Compiling fqlib v0.5.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 4.32s [INFO] running `Command { std: "docker" "inspect" "158ad4226ee87e1564832adc4400ef370741e114e23d7377e08c7244c58bf82f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "158ad4226ee87e1564832adc4400ef370741e114e23d7377e08c7244c58bf82f", kill_on_drop: false }` [INFO] [stdout] 158ad4226ee87e1564832adc4400ef370741e114e23d7377e08c7244c58bf82f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c8ac004eab7d63a0ad09a2dde3d3353ba464f767bee4de425dc8f74c46a1905e" "/opt/rustwide/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 6128b7dbf9e07c011da4ac4cf8e364bf4d2bba3e493e92b1f0c830d52b4936e4 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "6128b7dbf9e07c011da4ac4cf8e364bf4d2bba3e493e92b1f0c830d52b4936e4", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.08s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/fqlib-d1c640a5d54caf99 [INFO] [stdout] [INFO] [stdout] running 50 tests [INFO] [stdout] test commands::filter::tests::test_read_names ... ok [INFO] [stdout] test commands::lint::tests::test_build_error_message ... ok [INFO] [stdout] test commands::lint::tests::test_build_error_message_with_no_col_no ... ok [INFO] [stdout] test validators::paired::names::tests::test_level ... ok [INFO] [stdout] test validators::paired::names::tests::test_name ... ok [INFO] [stdout] test validators::paired::names::tests::test_validate ... ok [INFO] [stdout] test fastq::reader::tests::test_read_record ... ok [INFO] [stdout] test validators::single::alphabet::tests::test_name ... ok [INFO] [stdout] test distributions::character::tests::test_sample ... ok [INFO] [stdout] test validators::single::alphabet::tests::test_level ... ok [INFO] [stdout] test validators::single::alphabet::tests::test_new ... ok [INFO] [stdout] test distributions::quality_scores::tests::test_clamp ... ok [INFO] [stdout] test fastq::writer::tests::test_write_record ... ok [INFO] [stdout] test generator::tests::test_next_record ... ok [INFO] [stdout] test fastq::record::tests::test_clear ... ok [INFO] [stdout] test validators::single::alphabet::tests::test_code ... ok [INFO] [stdout] test commands::filter::tests::test_copy_filtered ... ok [INFO] [stdout] test commands::filter::tests::test_name_id ... ok [INFO] [stdout] test validators::single::complete::tests::test_code ... ok [INFO] [stdout] test validators::single::complete::tests::test_name ... ok [INFO] [stdout] test validators::single::complete::tests::test_level ... ok [INFO] [stdout] test validators::single::alphabet::tests::test_validate ... ok [INFO] [stdout] test validators::single::consistent_seq_qual::tests::test_level ... ok [INFO] [stdout] test validators::single::consistent_seq_qual::tests::test_validate ... ok [INFO] [stdout] test validators::single::duplicate_name::tests::test_code ... ok [INFO] [stdout] test validators::single::consistent_seq_qual::tests::test_code ... ok [INFO] [stdout] test validators::single::duplicate_name::tests::test_is_empty ... ok [INFO] [stdout] test validators::paired::names::tests::test_code ... ok [INFO] [stdout] test validators::single::duplicate_name::tests::test_name ... ok [INFO] [stdout] test validators::single::name::tests::test_code ... ok [INFO] [stdout] test validators::single::name::tests::test_level ... ok [INFO] [stdout] test validators::single::name::tests::test_name ... ok [INFO] [stdout] test validators::single::quality_string::tests::test_validate ... ok [INFO] [stdout] test validators::single::plus_line::tests::test_validate ... ok [INFO] [stdout] test validators::single::plus_line::tests::test_code ... ok [INFO] [stdout] test validators::tests::test_filter_single_read_validators ... ok [INFO] [stdout] test validators::tests::test_filter_validators ... ok [INFO] [stdout] test validators::tests::test_filter_paired_read_validators ... ok [INFO] [stdout] test validators::single::quality_string::tests::test_level ... ok [INFO] [stdout] test validators::validation_level::tests::test_from_str ... ok [INFO] [stdout] test validators::single::quality_string::tests::test_name ... ok [INFO] [stdout] test validators::single::plus_line::tests::test_level ... ok [INFO] [stdout] test validators::single::name::tests::test_validate ... ok [INFO] [stdout] test validators::single::quality_string::tests::test_code ... ok [INFO] [stdout] test validators::single::consistent_seq_qual::tests::test_name ... ok [INFO] [stdout] test validators::tests::test_filter_paired_read_validators_with_disabled_validators ... ok [INFO] [stdout] test validators::single::complete::tests::test_validate ... ok [INFO] [stdout] test validators::single::plus_line::tests::test_name ... ok [INFO] [stdout] test validators::tests::test_filter_single_read_validators_with_disabled_validators ... ok [INFO] [stdout] test validators::single::duplicate_name::tests::test_level ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 50 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Running /opt/rustwide/target/debug/deps/fq-9ccddd0e735f94cb [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Doc-tests fqlib [INFO] [stdout] [INFO] [stdout] running 10 tests [INFO] [stdout] test src/validators/single/duplicate_name.rs - validators::single::duplicate_name::DuplicateNameValidator::insert (line 63) ... ok [INFO] [stdout] test src/generator.rs - generator::Generator::from_rng (line 91) ... ok [INFO] [stdout] test src/generator.rs - generator::Generator::next_record (line 129) ... ok [INFO] [stdout] test src/generator.rs - generator::Generator::new (line 43) ... ok [INFO] [stdout] test src/generator.rs - generator::Generator::from_seed (line 55) ... ok [INFO] [stdout] test src/generator.rs - generator::Generator::next_record_with_name (line 148) ... ok [INFO] [stdout] test src/validators/single/duplicate_name.rs - validators::single::duplicate_name::DuplicateNameValidator::is_empty (line 86) ... ok [INFO] [stdout] test src/distributions/character.rs - distributions::character::Character (line 8) ... ok [INFO] [stdout] test src/validators/single/duplicate_name.rs - validators::single::duplicate_name::DuplicateNameValidator (line 22) ... ok [INFO] [stdout] test src/fastq/record.rs - fastq::record::Record::reset (line 74) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 10 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "6128b7dbf9e07c011da4ac4cf8e364bf4d2bba3e493e92b1f0c830d52b4936e4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6128b7dbf9e07c011da4ac4cf8e364bf4d2bba3e493e92b1f0c830d52b4936e4", kill_on_drop: false }` [INFO] [stdout] 6128b7dbf9e07c011da4ac4cf8e364bf4d2bba3e493e92b1f0c830d52b4936e4