[INFO] cloning repository https://github.com/hisakatha/extract-bam-unique-alignment [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/hisakatha/extract-bam-unique-alignment" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fhisakatha%2Fextract-bam-unique-alignment", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fhisakatha%2Fextract-bam-unique-alignment'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] ebbaf8b3765abcae97fb57246ebdc215b5e30d9c [INFO] testing hisakatha/extract-bam-unique-alignment against master#5d5ff84130da0d74c6ece368dbe821d8f83fa526 for pr-79296 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fhisakatha%2Fextract-bam-unique-alignment" "/workspace/builds/worker-8/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-8/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/hisakatha/extract-bam-unique-alignment on toolchain 5d5ff84130da0d74c6ece368dbe821d8f83fa526 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/hisakatha/extract-bam-unique-alignment [INFO] finished tweaking git repo https://github.com/hisakatha/extract-bam-unique-alignment [INFO] tweaked toml for git repo https://github.com/hisakatha/extract-bam-unique-alignment written to /workspace/builds/worker-8/source/Cargo.toml [INFO] crate git repo https://github.com/hisakatha/extract-bam-unique-alignment already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 3b696345f206b944bcfeea5d820b8927a18016ef46ba0c4aedd45c8e4dd3397e [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "3b696345f206b944bcfeea5d820b8927a18016ef46ba0c4aedd45c8e4dd3397e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "3b696345f206b944bcfeea5d820b8927a18016ef46ba0c4aedd45c8e4dd3397e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3b696345f206b944bcfeea5d820b8927a18016ef46ba0c4aedd45c8e4dd3397e", kill_on_drop: false }` [INFO] [stdout] 3b696345f206b944bcfeea5d820b8927a18016ef46ba0c4aedd45c8e4dd3397e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] aebde19e4f9c9b4cc84e3704f8d8cd9dbc6f7f48822253b316339bc8c903212f [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "aebde19e4f9c9b4cc84e3704f8d8cd9dbc6f7f48822253b316339bc8c903212f", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.79 [INFO] [stderr] Compiling pkg-config v0.3.18 [INFO] [stderr] Compiling proc-macro2 v1.0.24 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling syn v1.0.44 [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling matches v0.1.8 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling serde_derive v1.0.116 [INFO] [stderr] Compiling tinyvec v0.3.4 [INFO] [stderr] Compiling serde v1.0.116 [INFO] [stderr] Compiling regex-syntax v0.6.19 [INFO] [stderr] Compiling percent-encoding v2.1.0 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling unicode-bidi v0.3.4 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling unicode-normalization v0.1.13 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Compiling jobserver v0.1.21 [INFO] [stderr] Compiling idna v0.2.0 [INFO] [stderr] Compiling cc v1.0.61 [INFO] [stderr] Compiling url v2.1.1 [INFO] [stderr] Compiling openssl-src v111.12.0+1.1.1h [INFO] [stderr] Compiling libz-sys v1.1.2 [INFO] [stderr] Compiling openssl-sys v0.9.58 [INFO] [stderr] Compiling curl-sys v0.4.36+curl-7.71.1 [INFO] [stderr] Compiling bzip2-sys v0.1.9+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.17 [INFO] [stderr] Compiling hts-sys v1.10.3 [INFO] [stderr] Compiling regex v1.4.0 [INFO] [stderr] Compiling thiserror-impl v1.0.21 [INFO] [stderr] Compiling derive-new v0.5.8 [INFO] [stderr] Compiling thiserror v1.0.21 [INFO] [stderr] Compiling bio-types v0.7.0 [INFO] [stderr] Compiling rust-htslib v0.32.0 [INFO] [stderr] Compiling extract_bam_unique_alignment v1.0.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 2m 54s [INFO] running `Command { std: "docker" "inspect" "aebde19e4f9c9b4cc84e3704f8d8cd9dbc6f7f48822253b316339bc8c903212f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "aebde19e4f9c9b4cc84e3704f8d8cd9dbc6f7f48822253b316339bc8c903212f", kill_on_drop: false }` [INFO] [stdout] aebde19e4f9c9b4cc84e3704f8d8cd9dbc6f7f48822253b316339bc8c903212f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 602596e1a39a3f7d8ae10bf55536c27bdb850800ddbc2f11a0e54ea79b78e416 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "602596e1a39a3f7d8ae10bf55536c27bdb850800ddbc2f11a0e54ea79b78e416", kill_on_drop: false }` [INFO] [stderr] Compiling extract_bam_unique_alignment v1.0.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.82s [INFO] running `Command { std: "docker" "inspect" "602596e1a39a3f7d8ae10bf55536c27bdb850800ddbc2f11a0e54ea79b78e416", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "602596e1a39a3f7d8ae10bf55536c27bdb850800ddbc2f11a0e54ea79b78e416", kill_on_drop: false }` [INFO] [stdout] 602596e1a39a3f7d8ae10bf55536c27bdb850800ddbc2f11a0e54ea79b78e416 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 37674e87654f5594452fba30b6c61eda494703947193905e41f085637e35f078 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "37674e87654f5594452fba30b6c61eda494703947193905e41f085637e35f078", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.11s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/extract_bam_unique_alignment-d5160eb4e8e660d7 [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "37674e87654f5594452fba30b6c61eda494703947193905e41f085637e35f078", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "37674e87654f5594452fba30b6c61eda494703947193905e41f085637e35f078", kill_on_drop: false }` [INFO] [stdout] 37674e87654f5594452fba30b6c61eda494703947193905e41f085637e35f078