[INFO] cloning repository https://github.com/esrice/trio_binning
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/esrice/trio_binning" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fesrice%2Ftrio_binning", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fesrice%2Ftrio_binning'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] b253f856c7979414f2a8346270715cb73779ccad
[INFO] testing esrice/trio_binning against master#5d5ff84130da0d74c6ece368dbe821d8f83fa526 for pr-79296
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fesrice%2Ftrio_binning" "/workspace/builds/worker-2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/esrice/trio_binning on toolchain 5d5ff84130da0d74c6ece368dbe821d8f83fa526
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/esrice/trio_binning
[INFO] finished tweaking git repo https://github.com/esrice/trio_binning
[INFO] tweaked toml for git repo https://github.com/esrice/trio_binning written to /workspace/builds/worker-2/source/Cargo.toml
[INFO] crate git repo https://github.com/esrice/trio_binning already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] e95213cc3e9621e646900d6d985539c11dbb682835078299eacfcb1e8b639086
[INFO] running `Command { std: "docker" "start" "-a" "e95213cc3e9621e646900d6d985539c11dbb682835078299eacfcb1e8b639086", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "e95213cc3e9621e646900d6d985539c11dbb682835078299eacfcb1e8b639086", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e95213cc3e9621e646900d6d985539c11dbb682835078299eacfcb1e8b639086", kill_on_drop: false }`
[INFO] [stdout] e95213cc3e9621e646900d6d985539c11dbb682835078299eacfcb1e8b639086
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] eb79295825f5498f0a1776b26f224cae81b247535163debe1d39bd7d1e71a395
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "eb79295825f5498f0a1776b26f224cae81b247535163debe1d39bd7d1e71a395", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.71
[INFO] [stderr]    Compiling cc v1.0.18
[INFO] [stderr]    Compiling unicode-xid v0.1.0
[INFO] [stderr]    Compiling proc-macro2 v0.4.13
[INFO] [stderr]    Compiling glob v0.2.11
[INFO] [stderr]    Compiling pkg-config v0.3.14
[INFO] [stderr]    Compiling utf8-ranges v1.0.0
[INFO] [stderr]    Compiling scopeguard v0.3.3
[INFO] [stderr]    Compiling quick-error v1.2.2
[INFO] [stderr]    Compiling regex v1.0.2
[INFO] [stderr]    Compiling stable_deref_trait v1.1.1
[INFO] [stderr]    Compiling unicode-width v0.1.5
[INFO] [stderr]    Compiling vec_map v0.8.1
[INFO] [stderr]    Compiling serde v1.0.72
[INFO] [stderr]    Compiling ansi_term v0.11.0
[INFO] [stderr]    Compiling termcolor v1.0.1
[INFO] [stderr]    Compiling memoffset v0.2.1
[INFO] [stderr]    Compiling bindgen v0.36.1
[INFO] [stderr]    Compiling peeking_take_while v0.1.2
[INFO] [stderr]    Compiling crc32fast v1.2.0
[INFO] [stderr]    Compiling unicode-normalization v0.1.7
[INFO] [stderr]    Compiling percent-encoding v1.0.1
[INFO] [stderr]    Compiling adler32 v1.0.4
[INFO] [stderr]    Compiling ieee754 v0.2.2
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling scoped_threadpool v0.1.9
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling lazy_static v1.1.0
[INFO] [stderr]    Compiling regex-syntax v0.6.2
[INFO] [stderr]    Compiling log v0.4.4
[INFO] [stderr]    Compiling regex-syntax v0.5.6
[INFO] [stderr]    Compiling owning_ref v0.3.3
[INFO] [stderr]    Compiling humantime v1.1.1
[INFO] [stderr]    Compiling fs-utils v1.1.0
[INFO] [stderr]    Compiling proc-macro2 v0.3.5
[INFO] [stderr]    Compiling itertools v0.6.5
[INFO] [stderr]    Compiling miniz_oxide v0.3.6
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling lock_api v0.1.3
[INFO] [stderr]    Compiling smallvec v0.6.13
[INFO] [stderr]    Compiling clang-sys v0.22.0
[INFO] [stderr]    Compiling quote v0.5.2
[INFO] [stderr]    Compiling thread_local v0.3.6
[INFO] [stderr]    Compiling crossbeam-epoch v0.5.2
[INFO] [stderr]    Compiling quote v0.6.8
[INFO] [stderr]    Compiling memchr v2.0.1
[INFO] [stderr]    Compiling term_size v0.3.1
[INFO] [stderr]    Compiling memchr v1.0.2
[INFO] [stderr]    Compiling atty v0.2.11
[INFO] [stderr]    Compiling rand v0.4.3
[INFO] [stderr]    Compiling which v1.0.5
[INFO] [stderr]    Compiling rand v0.5.5
[INFO] [stderr]    Compiling slice-deque v0.1.11
[INFO] [stderr]    Compiling idna v0.1.5
[INFO] [stderr]    Compiling flate2 v1.0.14
[INFO] [stderr]    Compiling syn v0.14.9
[INFO] [stderr]    Compiling aho-corasick v0.6.6
[INFO] [stderr]    Compiling textwrap v0.10.0
[INFO] [stderr]    Compiling crossbeam-deque v0.5.2
[INFO] [stderr]    Compiling nom v3.2.1
[INFO] [stderr]    Compiling libloading v0.5.0
[INFO] [stderr]    Compiling bzip2-sys v0.1.6 (https://github.com/alexcrichton/bzip2-rs.git#54aef435)
[INFO] [stderr]    Compiling libz-sys v1.0.25
[INFO] [stderr]    Compiling lzma-sys v0.1.11
[INFO] [stderr]    Compiling buf_redux v0.7.1
[INFO] [stderr]    Compiling clap v2.32.0
[INFO] [stderr]    Compiling url v1.7.1
[INFO] [stderr]    Compiling parking_lot_core v0.2.14
[INFO] [stderr]    Compiling regex v0.2.11
[INFO] [stderr]    Compiling cexpr v0.2.3
[INFO] [stderr]    Compiling parking_lot v0.6.3
[INFO] [stderr]    Compiling crossbeam-channel v0.2.4
[INFO] [stderr]    Compiling crossbeam v0.4.1
[INFO] [stderr]    Compiling serde_derive v1.0.72
[INFO] [stderr]    Compiling env_logger v0.5.12
[INFO] [stderr]    Compiling bio-types v0.2.0
[INFO] [stderr]    Compiling seq_io v0.3.0
[INFO] [stderr]    Compiling rust-htslib v0.21.1-alpha.0 (https://github.com/rust-bio/rust-htslib.git?rev=1f9736e#1f9736ef)
[INFO] [stderr]    Compiling trio_binning v0.2.3 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 2m 35s
[INFO] running `Command { std: "docker" "inspect" "eb79295825f5498f0a1776b26f224cae81b247535163debe1d39bd7d1e71a395", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "eb79295825f5498f0a1776b26f224cae81b247535163debe1d39bd7d1e71a395", kill_on_drop: false }`
[INFO] [stdout] eb79295825f5498f0a1776b26f224cae81b247535163debe1d39bd7d1e71a395
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] aae7a8e13f202a867c03f278971d7fd99376900fced5d6cc161c708d9f42b425
[INFO] running `Command { std: "docker" "start" "-a" "aae7a8e13f202a867c03f278971d7fd99376900fced5d6cc161c708d9f42b425", kill_on_drop: false }`
[INFO] [stderr]    Compiling trio_binning v0.2.3 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 3.88s
[INFO] running `Command { std: "docker" "inspect" "aae7a8e13f202a867c03f278971d7fd99376900fced5d6cc161c708d9f42b425", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "aae7a8e13f202a867c03f278971d7fd99376900fced5d6cc161c708d9f42b425", kill_on_drop: false }`
[INFO] [stdout] aae7a8e13f202a867c03f278971d7fd99376900fced5d6cc161c708d9f42b425
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:6eabd152ff4036248d66efda456a36cb33d24b7291b33f25f75140726c88da35" "/opt/rustwide/cargo-home/bin/cargo" "+5d5ff84130da0d74c6ece368dbe821d8f83fa526" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 617d3c7910143cbb99ee3896b957b15595c59c92835fc9af00aafc75ed6ee018
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "617d3c7910143cbb99ee3896b957b15595c59c92835fc9af00aafc75ed6ee018", kill_on_drop: false }`
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.12s
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/trio_binning-cfc2fa3fc504f525
[INFO] [stdout] 
[INFO] [stdout] running 9 tests
[INFO] [stdout] test kmer::tests::bits_reversible ... ok
[INFO] [stdout] test classify::tests::test_count ... ok
[INFO] [stdout] test kmer::tests::canonical ... ok
[INFO] [stdout] test kmer::tests::revcomp_reversible ... ok
[INFO] [stdout] test kmer::tests::too_long_kmer_to_bits ... ok
[INFO] [stdout] test kmer::tests::invalid_canonical ... ok
[INFO] [stdout] test kmer::tests::invalid_kmer_base ... ok
[INFO] [stdout] test kmer::tests::invalid_revcomp_base ... ok
[INFO] [stdout] test kmer::tests::too_long_bits_to_kmer ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 9 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/classify_by_alignment-23132a2657a7e9df
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/classify_by_kmers-7ea65fbee6399ee6
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests trio_binning
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stdout] test src/classify.rs - classify::open_writer (line 159) ... ignored
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 1 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "617d3c7910143cbb99ee3896b957b15595c59c92835fc9af00aafc75ed6ee018", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "617d3c7910143cbb99ee3896b957b15595c59c92835fc9af00aafc75ed6ee018", kill_on_drop: false }`
[INFO] [stdout] 617d3c7910143cbb99ee3896b957b15595c59c92835fc9af00aafc75ed6ee018